RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W POG1P40473 351 aa0.78□□□□□ -2.28
CDC39YCR093W TOS8P53147 276 aa0.78□□□□□ -2.28
CDC39YCR093W ALG13P53178 202 aa0.78□□□□□ -2.28
CDC39YCR093W TRM12Q04235 462 aa0.78□□□□□ -2.28
CDC39YCR093W PSF1Q12488 208 aa0.78□□□□□ -2.28
CDC39YCR093W AYR1P40471 297 aa0.78□□□□□ -2.28
CDC39YCR093W YFH7P43591 353 aa0.78□□□□□ -2.28
CDC39YCR093W GPI14P47088 403 aaKnown RBP0.78□□□□□ -2.28
CDC39YCR093W CWC23P52868 283 aaPredicted RBP0.78□□□□□ -2.28
CDC39YCR093W PGA1P53896 198 aa0.78□□□□□ -2.28
CDC39YCR093W RRT7Q07829 113 aa0.78□□□□□ -2.28
CDC39YCR093W YOR268CQ08734 132 aa0.78□□□□□ -2.28
CDC39YCR093W ECM29P38737 1868 aa0.78□□□□□ -2.28
CDC39YCR093W MRS1P07266 363 aa0.78□□□□□ -2.28
CDC39YCR093W AHC2P25649 128 aa0.78□□□□□ -2.28
CDC39YCR093W BUB2P26448 306 aaPredicted RBP0.78□□□□□ -2.28
CDC39YCR093W UBC12P52491 188 aa0.78□□□□□ -2.28
CDC39YCR093W ODC2Q99297 307 aa0.78□□□□□ -2.28
CDC39YCR093W YGL041W-AP0C5N3 154 aa0.78□□□□□ -2.29
CDC39YCR093W YOR062CP36025 268 aa0.78□□□□□ -2.29
CDC39YCR093W CCS1P40202 249 aaKnown RBP0.78□□□□□ -2.29
CDC39YCR093W HRT1Q08273 121 aa0.78□□□□□ -2.29
CDC39YCR093W SEC17P32602 292 aa0.77□□□□□ -2.29
CDC39YCR093W CYT2Q00873 224 aa0.77□□□□□ -2.29
CDC39YCR093W UPS3Q04006 179 aa0.77□□□□□ -2.29
CDC39YCR093W RAD28Q12021 506 aa0.77□□□□□ -2.29
CDC39YCR093W ACC1Q00955 2233 aaKnown RBP0.77□□□□□ -2.29
CDC39YCR093W GSP2P32836 220 aaKnown RBP0.77□□□□□ -2.29
CDC39YCR093W YKR041WP36134 250 aa0.77□□□□□ -2.29
CDC39YCR093W SBH1P52870 82 aa0.77□□□□□ -2.29
CDC39YCR093W CGI121Q03705 181 aaKnown RBP0.77□□□□□ -2.29
CDC39YCR093W YLR046CQ12253 270 aa0.77□□□□□ -2.29
CDC39YCR093W TIM9O74700 87 aa0.77□□□□□ -2.29
CDC39YCR093W ARG80P07249 177 aa0.77□□□□□ -2.29
CDC39YCR093W RFA3P26755 122 aaKnown RBP0.77□□□□□ -2.29
CDC39YCR093W SPG1P50088 95 aa0.77□□□□□ -2.29
CDC39YCR093W YML100W-AQ8TGT0 57 aa0.77□□□□□ -2.29
CDC39YCR093W NVJ1P38881 321 aa0.77□□□□□ -2.29
CDC39YCR093W ALB1P47019 175 aaPredicted RBP0.77□□□□□ -2.29
CDC39YCR093W APS3P47064 194 aa0.77□□□□□ -2.29
CDC39YCR093W CCH1P50077 2039 aa0.77□□□□□ -2.29
CDC39YCR093W RPL40AP0CH08 128 aaKnown RBP0.77□□□□□ -2.29
CDC39YCR093W RPL40BP0CH09 128 aaKnown RBP0.77□□□□□ -2.29
CDC39YCR093W ADE1P27616 306 aa0.77□□□□□ -2.29
CDC39YCR093W EHD3P28817 500 aa0.77□□□□□ -2.29
CDC39YCR093W OPY1P38271 328 aa0.77□□□□□ -2.29
CDC39YCR093W DLS1P40366 167 aa0.77□□□□□ -2.29
CDC39YCR093W OCH1P31755 480 aa0.76□□□□□ -2.29
CDC39YCR093W ARO7P32178 256 aa0.76□□□□□ -2.29
CDC39YCR093W RPL13BP40212 199 aaKnown RBP0.76□□□□□ -2.29
CDC39YCR093W RPL13AQ12690 199 aaPredicted RBP0.76□□□□□ -2.29
CDC39YCR093W REP2P03872 296 aa0.76□□□□□ -2.29
CDC39YCR093W ECM31P38122 312 aa0.76□□□□□ -2.29
CDC39YCR093W YBR096WP38256 230 aa0.76□□□□□ -2.29
CDC39YCR093W YHR180WP38868 163 aa0.76□□□□□ -2.29
CDC39YCR093W YDR274CP87283 123 aa0.76□□□□□ -2.29
CDC39YCR093W ARO80Q04052 950 aa0.76□□□□□ -2.29
CDC39YCR093W ARR2Q06597 130 aa0.76□□□□□ -2.29
CDC39YCR093W VAM10Q08474 114 aa0.76□□□□□ -2.29
CDC39YCR093W SDH4P37298 181 aa0.76□□□□□ -2.29
CDC39YCR093W NRG2P38082 220 aa0.76□□□□□ -2.29
CDC39YCR093W RPA43P46669 326 aa0.76□□□□□ -2.29
CDC39YCR093W NOP19P53317 196 aaPredicted RBP0.76□□□□□ -2.29
CDC39YCR093W SML1Q04964 104 aa0.76□□□□□ -2.29
CDC39YCR093W NOC4Q06512 552 aaPredicted RBP0.76□□□□□ -2.29
CDC39YCR093W FIG1P38224 298 aa0.76□□□□□ -2.29
CDC39YCR093W YJL009WP47078 108 aa0.76□□□□□ -2.29
CDC39YCR093W RAD51P25454 400 aa0.76□□□□□ -2.29
CDC39YCR093W YGR269WP40326 108 aa0.76□□□□□ -2.29
CDC39YCR093W SER2P42941 309 aa0.76□□□□□ -2.29
CDC39YCR093W YDR366CP87287 132 aa0.76□□□□□ -2.29
CDC39YCR093W RSM10Q03201 203 aa0.76□□□□□ -2.29
CDC39YCR093W YOL160WQ08321 113 aa0.76□□□□□ -2.29
CDC39YCR093W ATP14Q12349 124 aa0.76□□□□□ -2.29
CDC39YCR093W MAK5P38112 773 aaPredicted RBP0.75□□□□□ -2.29
CDC39YCR093W THG1P53215 237 aaKnown RBP0.75□□□□□ -2.29
CDC39YCR093W CAB4P53332 305 aa0.75□□□□□ -2.29
CDC39YCR093W RTC3P38804 111 aaPredicted RBP0.75□□□□□ -2.29
CDC39YCR093W YER076CP40049 302 aa0.75□□□□□ -2.29
CDC39YCR093W YLR422WQ06409 1932 aa0.75□□□□□ -2.29
CDC39YCR093W FMP49A0A023PZB3 126 aa0.75□□□□□ -2.29
CDC39YCR093W CLG1P35190 452 aa0.75□□□□□ -2.29
CDC39YCR093W YKR045CP36138 183 aa0.75□□□□□ -2.29
CDC39YCR093W IRC21Q04772 201 aa0.75□□□□□ -2.29
CDC39YCR093W HUT1Q12520 339 aa0.75□□□□□ -2.29
CDC39YCR093W RPS25BP0C0T4 108 aaKnown RBP0.75□□□□□ -2.29
CDC39YCR093W IDP1P21954 428 aaKnown RBP0.75□□□□□ -2.29
CDC39YCR093W SPO13P23624 291 aa0.75□□□□□ -2.29
CDC39YCR093W TCA17P32613 152 aa0.75□□□□□ -2.29
CDC39YCR093W DOC1P53068 250 aa0.75□□□□□ -2.29
CDC39YCR093W YGR039WP53225 103 aa0.75□□□□□ -2.29
CDC39YCR093W GIM5Q04493 163 aa0.75□□□□□ -2.29
CDC39YCR093W MCP1Q12106 302 aa0.75□□□□□ -2.29
CDC39YCR093W RPS25AQ3E792 108 aaPredicted RBP0.75□□□□□ -2.29
CDC39YCR093W YCR023CP25351 611 aa0.75□□□□□ -2.29
CDC39YCR093W YNL184CP53876 108 aa0.75□□□□□ -2.29
CDC39YCR093W PIR1Q03178 341 aa0.75□□□□□ -2.29
CDC39YCR093W LOA1Q06508 300 aa0.75□□□□□ -2.29
CDC39YCR093W SEC11P15367 167 aa0.74□□□□□ -2.29
CDC39YCR093W AGA2P32781 87 aa0.74□□□□□ -2.29
Retrieved 100 of 5,963 RNA–protein pairs in 51.2 ms