RNA–Protein interactions for RNA: YJR060W

CBF1, Transcript of Basic helix-loop-helix (bHLH) protein, yeast

Gene CBF1, Length 1,056 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CBF1	YJR060W	YJR056C	P47115	236 aa		4.29	□□□□□ -1.72
CBF1	YJR060W	STD1	Q02794	444 aa		4.29	□□□□□ -1.72
CBF1	YJR060W	BET5	Q03630	159 aa		4.29	□□□□□ -1.72
CBF1	YJR060W	THI74	Q04083	370 aa		4.29	□□□□□ -1.72
CBF1	YJR060W	ROX3	P25046	220 aa		4.28	□□□□□ -1.72
CBF1	YJR060W	YCR016W	P25617	290 aa	Known RBP	4.28	□□□□□ -1.72
CBF1	YJR060W	ERV15	P38312	142 aa		4.28	□□□□□ -1.72
CBF1	YJR060W	LSM12	P38828	187 aa	Known RBP	4.28	□□□□□ -1.72
CBF1	YJR060W	YHR138C	P38841	114 aa	Predicted RBP	4.28	□□□□□ -1.72
CBF1	YJR060W	RPL13B	P40212	199 aa	Known RBP	4.28	□□□□□ -1.72
CBF1	YJR060W	ODC1	Q03028	310 aa		4.28	□□□□□ -1.72
CBF1	YJR060W	MIX17	Q03667	156 aa		4.28	□□□□□ -1.72
CBF1	YJR060W	SRL1	Q08673	210 aa		4.28	□□□□□ -1.72
CBF1	YJR060W	YCT1	Q12235	531 aa		4.28	□□□□□ -1.72
CBF1	YJR060W	RAX2	Q12465	1220 aa		4.28	□□□□□ -1.72
CBF1	YJR060W	RPL13A	Q12690	199 aa	Predicted RBP	4.28	□□□□□ -1.72
CBF1	YJR060W	HUG1	Q6Q5K6	68 aa		4.28	□□□□□ -1.72
CBF1	YJR060W	ARG80	P07249	177 aa		4.27	□□□□□ -1.73
CBF1	YJR060W	RPL12A	P0CX53	165 aa	Known RBP	4.27	□□□□□ -1.73
CBF1	YJR060W	RPL12B	P0CX54	165 aa		4.27	□□□□□ -1.73
CBF1	YJR060W	TOM40	P23644	387 aa	Known RBP	4.27	□□□□□ -1.73
CBF1	YJR060W	PPQ1	P32945	549 aa		4.27	□□□□□ -1.73
CBF1	YJR060W	YKL075C	P36083	450 aa		4.27	□□□□□ -1.73
CBF1	YJR060W	YPC1	P38298	316 aa		4.27	□□□□□ -1.73
CBF1	YJR060W	RTC3	P38804	111 aa	Predicted RBP	4.27	□□□□□ -1.73
CBF1	YJR060W	APJ1	P53940	528 aa		4.27	□□□□□ -1.73
CBF1	YJR060W	ATG31	Q12421	196 aa		4.27	□□□□□ -1.73
CBF1	YJR060W	VPS63	O13549	108 aa		4.26	□□□□□ -1.73
CBF1	YJR060W	PUT1	P09368	476 aa		4.26	□□□□□ -1.73
CBF1	YJR060W	HMX1	P32339	317 aa		4.26	□□□□□ -1.73
CBF1	YJR060W	ATP3	P38077	311 aa	Known RBP	4.26	□□□□□ -1.73
CBF1	YJR060W	CUE1	P38428	203 aa		4.26	□□□□□ -1.73
CBF1	YJR060W	CWC25	P53854	179 aa	Known RBP	4.26	□□□□□ -1.73
CBF1	YJR060W	YMR166C	Q03829	368 aa		4.26	□□□□□ -1.73
CBF1	YJR060W	TIM18	Q08749	192 aa		4.26	□□□□□ -1.73
CBF1	YJR060W	YIL002W-A	Q3E7Z5	69 aa		4.26	□□□□□ -1.73
CBF1	YJR060W	YOS1	Q3E834	85 aa		4.26	□□□□□ -1.73
CBF1	YJR060W	TPI1	P00942	248 aa	Known RBP	4.25	□□□□□ -1.73
CBF1	YJR060W	TIP1	P27654	210 aa	Predicted RBP	4.25	□□□□□ -1.73
CBF1	YJR060W	SWM2	P40342	146 aa		4.25	□□□□□ -1.73
CBF1	YJR060W	YGR210C	P42942	411 aa		4.25	□□□□□ -1.73
CBF1	YJR060W	PAM18	Q07914	168 aa		4.25	□□□□□ -1.73
CBF1	YJR060W	YFL068W	P0CX99	160 aa		4.24	□□□□□ -1.73
CBF1	YJR060W	YLL066W-A	P0CY00	160 aa		4.24	□□□□□ -1.73
CBF1	YJR060W	YLL067W-A	P0CY01	160 aa		4.24	□□□□□ -1.73
CBF1	YJR060W	MSK1	P32048	576 aa		4.24	□□□□□ -1.73
CBF1	YJR060W	PRY2	P36110	329 aa		4.24	□□□□□ -1.73
CBF1	YJR060W	SSU72	P53538	206 aa	Predicted RBP	4.24	□□□□□ -1.73
CBF1	YJR060W	ACT1	P60010	375 aa	Known RBP	4.24	□□□□□ -1.73
CBF1	YJR060W	FSH2	Q05015	223 aa		4.24	□□□□□ -1.73
CBF1	YJR060W	MSC3	Q05812	728 aa		4.24	□□□□□ -1.73
CBF1	YJR060W	LDS2	Q08218	356 aa		4.24	□□□□□ -1.73
CBF1	YJR060W	MSA1	Q08471	629 aa		4.24	□□□□□ -1.73
CBF1	YJR060W	FEX2	Q08991	375 aa		4.24	□□□□□ -1.73
CBF1	YJR060W	JID1	Q12350	301 aa		4.24	□□□□□ -1.73
CBF1	YJR060W	ATO3	Q12359	275 aa		4.24	□□□□□ -1.73
CBF1	YJR060W	HTB1	P02293	131 aa	Known RBP	4.23	□□□□□ -1.73
CBF1	YJR060W	YKL102C	P34249	101 aa		4.23	□□□□□ -1.73
CBF1	YJR060W	YIR035C	P40579	254 aa		4.23	□□□□□ -1.73
CBF1	YJR060W	YDL186W	P48568	277 aa		4.23	□□□□□ -1.73
CBF1	YJR060W	MSO1	P53604	210 aa	Known RBP	4.23	□□□□□ -1.73
CBF1	YJR060W	VPS28	Q02767	242 aa		4.23	□□□□□ -1.73
CBF1	YJR060W	YLR281C	Q05863	155 aa		4.23	□□□□□ -1.73
CBF1	YJR060W	RAD28	Q12021	506 aa		4.23	□□□□□ -1.73
CBF1	YJR060W	GCN3	P14741	305 aa		4.22	□□□□□ -1.73
CBF1	YJR060W	SAR1	P20606	190 aa	Known RBP	4.22	□□□□□ -1.73
CBF1	YJR060W	YCR022C	P25620	114 aa		4.22	□□□□□ -1.73
CBF1	YJR060W	PRS4	P38063	326 aa	Predicted RBP	4.22	□□□□□ -1.73
CBF1	YJR060W	RFC2	P40348	353 aa		4.22	□□□□□ -1.73
CBF1	YJR060W	YJR012C	P47087	207 aa		4.22	□□□□□ -1.73
CBF1	YJR060W	ERG25	P53045	309 aa		4.22	□□□□□ -1.73
CBF1	YJR060W	YGR050C	P53231	118 aa		4.22	□□□□□ -1.73
CBF1	YJR060W	SPG4	Q04438	115 aa		4.22	□□□□□ -1.73
CBF1	YJR060W	FEX1	Q08913	375 aa		4.22	□□□□□ -1.73
CBF1	YJR060W	AIM45	Q12480	344 aa	Known RBP	4.22	□□□□□ -1.73
CBF1	YJR060W	YGL258W-A	Q3E740	77 aa		4.22	□□□□□ -1.73
CBF1	YJR060W	YGR035W-A	Q45U48	73 aa		4.22	□□□□□ -1.73
CBF1	YJR060W	DYN1	P36022	4092 aa		4.21	□□□□□ -1.74
CBF1	YJR060W	GRX2	P17695	143 aa	Known RBP	4.21	□□□□□ -1.74
CBF1	YJR060W	ACB1	P31787	87 aa		4.21	□□□□□ -1.74
CBF1	YJR060W	GEP4	P38812	185 aa		4.21	□□□□□ -1.74
CBF1	YJR060W	MST28	P39552	234 aa		4.21	□□□□□ -1.74
CBF1	YJR060W	ARP3	P47117	449 aa	Known RBP	4.21	□□□□□ -1.74
CBF1	YJR060W	YMR090W	Q04304	227 aa	Known RBP	4.21	□□□□□ -1.74
CBF1	YJR060W	ERP1	Q05359	219 aa	Known RBP	4.21	□□□□□ -1.74
CBF1	YJR060W	MCH1	Q07376	486 aa		4.21	□□□□□ -1.74
CBF1	YJR060W	NDE2	Q07500	545 aa		4.21	□□□□□ -1.74
CBF1	YJR060W	FCY1	Q12178	158 aa		4.21	□□□□□ -1.74
CBF1	YJR060W	TPT1	Q12272	230 aa	Known RBP	4.21	□□□□□ -1.74
CBF1	YJR060W	ATG5	Q12380	294 aa		4.21	□□□□□ -1.74
CBF1	YJR060W	SEC22	P22214	214 aa		4.2	□□□□□ -1.74
CBF1	YJR060W	YKL162C	P36052	402 aa		4.2	□□□□□ -1.74
CBF1	YJR060W	DFG10	P40526	253 aa		4.2	□□□□□ -1.74
CBF1	YJR060W	YJL213W	P40896	331 aa		4.2	□□□□□ -1.74
CBF1	YJR060W	PNC1	P53184	216 aa	Known RBP	4.2	□□□□□ -1.74
CBF1	YJR060W	HOR7	Q05827	59 aa		4.2	□□□□□ -1.74
CBF1	YJR060W	MRPL23	Q12487	163 aa	Predicted RBP	4.2	□□□□□ -1.74
CBF1	YJR060W	YLR146W-A	Q2V2P1	62 aa		4.2	□□□□□ -1.74
CBF1	YJR060W	NOP1	P15646	327 aa	Known RBP	4.19	□□□□□ -1.74
CBF1	YJR060W	CKS1	P20486	150 aa	Known RBP	4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 80.3 ms