RNA–Protein interactions for RNA: YER029C

SMB1, Transcript of Core Sm protein Sm B, yeast

Gene SMB1, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMB1	YER029C	SNO1	Q03144	224 aa		0.75	□□□□□ -2.29
SMB1	YER029C	UPS3	Q04006	179 aa		0.75	□□□□□ -2.29
SMB1	YER029C	GRE1	Q08969	168 aa		0.75	□□□□□ -2.29
SMB1	YER029C	PST2	Q12335	198 aa	Known RBP	0.75	□□□□□ -2.29
SMB1	YER029C	YPR014C	Q6B0W2	109 aa		0.75	□□□□□ -2.29
SMB1	YER029C	RPS24A	P0CX31	135 aa	Known RBP	0.74	□□□□□ -2.29
SMB1	YER029C	RPS24B	P0CX32	135 aa	Known RBP	0.74	□□□□□ -2.29
SMB1	YER029C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	0.74	□□□□□ -2.29	not detected
SMB1	YER029C	YKR041W	P36134	250 aa		0.74	□□□□□ -2.29
SMB1	YER029C	ALB1	P47019	175 aa	Predicted RBP	0.74	□□□□□ -2.29
SMB1	YER029C	YMR007W	Q03675	126 aa		0.74	□□□□□ -2.29
SMB1	YER029C	YDL085C-A	Q3E7B7	68 aa	Known RBP	0.74	□□□□□ -2.29
SMB1	YER029C	STF2	P16965	84 aa		0.73	□□□□□ -2.29
SMB1	YER029C	STP22	P25604	385 aa		0.73	□□□□□ -2.29
SMB1	YER029C	AHC2	P25649	128 aa		0.73	□□□□□ -2.29
SMB1	YER029C	SHG1	P38337	142 aa		0.73	□□□□□ -2.29
SMB1	YER029C	GIM3	P53900	129 aa		0.73	□□□□□ -2.29
SMB1	YER029C	YLR460C	P54007	376 aa		0.73	□□□□□ -2.29
SMB1	YER029C	PIR1	Q03178	341 aa		0.73	□□□□□ -2.29
SMB1	YER029C	SHH4	Q06236	168 aa		0.73	□□□□□ -2.29
SMB1	YER029C	ATP20	Q12233	115 aa		0.73	□□□□□ -2.29
SMB1	YER029C	DGK1	Q12382	290 aa		0.73	□□□□□ -2.29
SMB1	YER029C	YLR412C-A	Q3E742	68 aa		0.73	□□□□□ -2.29
SMB1	YER029C	COA3	Q3E7B2	85 aa		0.73	□□□□□ -2.29
SMB1	YER029C	SEN2	P16658	377 aa		0.72	□□□□□ -2.29
SMB1	YER029C	YCR023C	P25351	611 aa		0.72	□□□□□ -2.29
SMB1	YER029C	CDC39	P25655	2108 aa	Known RBP	0.72	□□□□□ -2.29
SMB1	YER029C	YKL102C	P34249	101 aa		0.72	□□□□□ -2.29
SMB1	YER029C	RRT1	P38192	103 aa		0.72	□□□□□ -2.29
SMB1	YER029C	NSA2	P40078	261 aa	Known RBP	0.72	□□□□□ -2.29
SMB1	YER029C	FMP32	P43557	207 aa		0.72	□□□□□ -2.29
SMB1	YER029C	RPL37B	P51402	88 aa	Known RBP	0.72	□□□□□ -2.29
SMB1	YER029C	MET31	Q03081	177 aa		0.72	□□□□□ -2.29
SMB1	YER029C	RRP17	Q04031	235 aa	Predicted RBP	0.72	□□□□□ -2.29
SMB1	YER029C	GAL83	Q04739	417 aa		0.72	□□□□□ -2.29
SMB1	YER029C	MPD1	Q12404	318 aa	Known RBP	0.72	□□□□□ -2.29
SMB1	YER029C	PRP8	P33334	2413 aa	Known RBP	0.72	□□□□□ -2.29
SMB1	YER029C	ATP7	P30902	174 aa		0.71	□□□□□ -2.3
SMB1	YER029C	CPR5	P35176	225 aa		0.71	□□□□□ -2.3
SMB1	YER029C	NVJ1	P38881	321 aa		0.71	□□□□□ -2.3
SMB1	YER029C	SOL1	P50278	321 aa		0.71	□□□□□ -2.3
SMB1	YER029C	AIM36	Q03798	255 aa		0.71	□□□□□ -2.3
SMB1	YER029C	GPI17	Q04080	534 aa		0.71	□□□□□ -2.3
SMB1	YER029C	UPS1	Q05776	175 aa		0.71	□□□□□ -2.3
SMB1	YER029C	DAS2	Q12084	232 aa		0.71	□□□□□ -2.3
SMB1	YER029C	CHD1	P32657	1468 aa		0.7	□□□□□ -2.3
SMB1	YER029C	CLG1	P35190	452 aa		0.7	□□□□□ -2.3
SMB1	YER029C	RFC2	P40348	353 aa		0.7	□□□□□ -2.3
SMB1	YER029C	MPM1	P40364	252 aa		0.7	□□□□□ -2.3
SMB1	YER029C	NSE4	P43124	402 aa		0.7	□□□□□ -2.3
SMB1	YER029C	YGL235W	P53071	178 aa		0.7	□□□□□ -2.3
SMB1	YER029C	YET3	Q07451	203 aa		0.7	□□□□□ -2.3
SMB1	YER029C	YOR015W	Q12169	119 aa		0.7	□□□□□ -2.3
SMB1	YER029C	TAR1	Q8TGM6	124 aa		0.7	□□□□□ -2.3
SMB1	YER029C	UBR1	P19812	1950 aa		0.69	□□□□□ -2.3
SMB1	YER029C	SEC14	P24280	304 aa	Known RBP	0.69	□□□□□ -2.3
SMB1	YER029C	FYV4	P38783	130 aa	Predicted RBP	0.69	□□□□□ -2.3
SMB1	YER029C	SEC72	P39742	193 aa	Known RBP	0.69	□□□□□ -2.3
SMB1	YER029C	POG1	P40473	351 aa		0.69	□□□□□ -2.3
SMB1	YER029C	VPS28	Q02767	242 aa		0.69	□□□□□ -2.3
SMB1	YER029C	DML1	Q03652	475 aa		0.69	□□□□□ -2.3
SMB1	YER029C	YDR391C	Q04170	232 aa		0.69	□□□□□ -2.3
SMB1	YER029C	ELP6	Q04868	273 aa		0.69	□□□□□ -2.3
SMB1	YER029C	LCL2	Q08045	131 aa		0.69	□□□□□ -2.3
SMB1	YER029C	ATG41	Q12048	136 aa		0.69	□□□□□ -2.3
SMB1	YER029C	SAC3	P46674	1301 aa		0.68	□□□□□ -2.3
SMB1	YER029C	HSP30	P25619	332 aa		0.68	□□□□□ -2.3
SMB1	YER029C	TRR1	P29509	319 aa	Known RBP	0.68	□□□□□ -2.3
SMB1	YER029C	MRPL15	P36523	253 aa		0.68	□□□□□ -2.3
SMB1	YER029C	ETR1	P38071	380 aa		0.68	□□□□□ -2.3
SMB1	YER029C	YIP3	P53633	176 aa		0.68	□□□□□ -2.3
SMB1	YER029C	YHP1	Q04116	353 aa		0.68	□□□□□ -2.3
SMB1	YER029C	HPT1	Q04178	221 aa	Known RBP	0.68	□□□□□ -2.3
SMB1	YER029C	RIM9	Q04734	239 aa		0.68	□□□□□ -2.3
SMB1	YER029C	PEX11	Q12462	236 aa		0.68	□□□□□ -2.3
SMB1	YER029C	QCR6	P00127	147 aa		0.67	□□□□□ -2.3
SMB1	YER029C	YBL010C	P32788	280 aa		0.67	□□□□□ -2.3
SMB1	YER029C	MAK5	P38112	773 aa	Predicted RBP	0.67	□□□□□ -2.3
SMB1	YER029C	TTI2	P47168	421 aa		0.67	□□□□□ -2.3
SMB1	YER029C	SBH2	P52871	88 aa		0.67	□□□□□ -2.3
SMB1	YER029C	JAC1	P53193	184 aa		0.67	□□□□□ -2.3
SMB1	YER029C	YKR005C	Q02203	525 aa		0.67	□□□□□ -2.3
SMB1	YER029C	TLG1	Q03322	224 aa		0.67	□□□□□ -2.3
SMB1	YER029C	YOR214C	Q12282	236 aa		0.67	□□□□□ -2.3
SMB1	YER029C	YOR381W-A	Q3E804	55 aa		0.67	□□□□□ -2.3
SMB1	YER029C	UBC8	P28263	218 aa		0.66	□□□□□ -2.3
SMB1	YER029C	AHT1	P29589	182 aa		0.66	□□□□□ -2.3
SMB1	YER029C	CSH1	P38287	376 aa		0.66	□□□□□ -2.3
SMB1	YER029C	YBR242W	P38331	238 aa		0.66	□□□□□ -2.3
SMB1	YER029C	SRP14	P38985	146 aa		0.66	□□□□□ -2.3
SMB1	YER029C	YNL200C	P40165	246 aa	Known RBP	0.66	□□□□□ -2.3
SMB1	YER029C	CCS1	P40202	249 aa	Known RBP	0.66	□□□□□ -2.3
SMB1	YER029C	YFL051C	P43552	160 aa		0.66	□□□□□ -2.3
SMB1	YER029C	ATG38	Q05789	226 aa	Known RBP	0.66	□□□□□ -2.3
SMB1	YER029C	YPR127W	Q06494	345 aa		0.66	□□□□□ -2.3
SMB1	YER029C	YPR203W	Q08994	102 aa		0.66	□□□□□ -2.3
SMB1	YER029C	YMR030W-A	Q3E760	96 aa		0.66	□□□□□ -2.3
SMB1	YER029C	YHL037C	P38733	133 aa		0.65	□□□□□ -2.31
SMB1	YER029C	TIM13	P53299	105 aa		0.65	□□□□□ -2.31
SMB1	YER029C	HHT1	P61830	136 aa		0.65	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 76.1 ms