RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	TRM10	Q12400	293 aa		3.67	□□□□□ -1.82
CAF16	YFL028C	YOR032W-A	Q8TGS1	66 aa		3.67	□□□□□ -1.82
CAF16	YFL028C	CBP6	P07253	162 aa	Predicted RBP	3.66	□□□□□ -1.82
CAF16	YFL028C	ERD2	P18414	219 aa		3.66	□□□□□ -1.82
CAF16	YFL028C	ATG15	P25641	520 aa		3.66	□□□□□ -1.82
CAF16	YFL028C	KRE6	P32486	720 aa		3.66	□□□□□ -1.82
CAF16	YFL028C	AIM29	P36154	155 aa		3.66	□□□□□ -1.82
CAF16	YFL028C	MRPL3	P36516	390 aa		3.66	□□□□□ -1.82
CAF16	YFL028C	MED8	P38304	223 aa		3.66	□□□□□ -1.82
CAF16	YFL028C	COG3	P40094	801 aa		3.66	□□□□□ -1.82
CAF16	YFL028C	SOK1	P40317	901 aa		3.66	□□□□□ -1.82
CAF16	YFL028C	GCN20	P43535	752 aa	Known RBP	3.66	□□□□□ -1.82
CAF16	YFL028C	FAR7	P43592	221 aa		3.66	□□□□□ -1.82
CAF16	YFL028C	ECO1	P43605	281 aa		3.66	□□□□□ -1.82
CAF16	YFL028C	YGL118C	P53132	145 aa		3.66	□□□□□ -1.82
CAF16	YFL028C	MIX14	Q04341	121 aa		3.66	□□□□□ -1.82
CAF16	YFL028C	YMR226C	Q05016	267 aa	Known RBP	3.66	□□□□□ -1.82
CAF16	YFL028C	ARC18	Q05933	178 aa	Known RBP	3.66	□□□□□ -1.82
CAF16	YFL028C	MCP1	Q12106	302 aa		3.66	□□□□□ -1.82
CAF16	YFL028C	TIR4	Q12218	487 aa	Predicted RBP	3.66	□□□□□ -1.82
CAF16	YFL028C	BLM10	P43583	2143 aa		3.65	□□□□□ -1.82
CAF16	YFL028C	SEC16	P48415	2195 aa	Known RBP	3.65	□□□□□ -1.82
CAF16	YFL028C	YAL064W-B	O13512	126 aa		3.65	□□□□□ -1.83
CAF16	YFL028C	IPP1	P00817	287 aa	Known RBP	3.65	□□□□□ -1.83
CAF16	YFL028C	YOL162W	P0CF19	215 aa		3.65	□□□□□ -1.83
CAF16	YFL028C	ASF2	P32448	525 aa	Predicted RBP	3.65	□□□□□ -1.83
CAF16	YFL028C	TIM12	P32830	109 aa		3.65	□□□□□ -1.83
CAF16	YFL028C	YRB2	P40517	327 aa		3.65	□□□□□ -1.83
CAF16	YFL028C	BAT2	P47176	376 aa	Known RBP	3.65	□□□□□ -1.83
CAF16	YFL028C	YMR099C	Q03161	297 aa	Known RBP	3.65	□□□□□ -1.83
CAF16	YFL028C	YRA1	Q12159	226 aa	Known RBP	3.65	□□□□□ -1.83
CAF16	YFL028C	SME1	Q12330	94 aa	Predicted RBP	3.65	□□□□□ -1.83
CAF16	YFL028C	YPL119C-A	Q3E751	87 aa		3.65	□□□□□ -1.83
CAF16	YFL028C	RIB3	Q99258	208 aa		3.65	□□□□□ -1.83
CAF16	YFL028C	YMR316C-A	I2HB70	103 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	YFR010W-A	P0C5N0	62 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	YHR214C-D	P0CX93	97 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	MATALPHA1	P0CY06	175 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	HMLALPHA1	P0CY07	175 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	YPK2	P18961	677 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	SCO1	P23833	295 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	HSP30	P25619	332 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	QRI5	P32344	111 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	YHR180W	P38868	163 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	VMA10	P48836	114 aa	Known RBP	3.64	□□□□□ -1.83
CAF16	YFL028C	YGL235W	P53071	178 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	YDR249C	Q03787	373 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	DFM1	Q12743	341 aa	Known RBP	3.64	□□□□□ -1.83
CAF16	YFL028C	YOL085C	Q99345	113 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	FLO9	P39712	1322 aa		3.64	□□□□□ -1.83
CAF16	YFL028C	TDH2	P00358	332 aa	Known RBP	3.63	□□□□□ -1.83
CAF16	YFL028C	DPM1	P14020	267 aa	Known RBP	3.63	□□□□□ -1.83
CAF16	YFL028C	SNF6	P18888	332 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	RNA15	P25299	296 aa	Predicted RBP	3.63	□□□□□ -1.83
CAF16	YFL028C	CDC39	P25655	2108 aa	Known RBP	3.63	□□□□□ -1.83
CAF16	YFL028C	EHD3	P28817	500 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	JEN1	P36035	616 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	YBR285W	P38354	144 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	YER184C	P39961	794 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	YNR062C	P53748	327 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	COG5	P53951	403 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	SDC1	Q03323	175 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	DML1	Q03652	475 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	ELP6	Q04868	273 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	ECM19	Q06011	112 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	YPR127W	Q06494	345 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	LOA1	Q06508	300 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	COQ10	Q08058	207 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	UIP4	Q08926	304 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	SPC3	Q12133	184 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	YAL063C-A	Q3E791	96 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	MHF1	Q3E835	90 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	Q0144	Q9ZZW2	109 aa		3.63	□□□□□ -1.83
CAF16	YFL028C	TPI1	P00942	248 aa	Known RBP	3.62	□□□□□ -1.83
CAF16	YFL028C	CAM1	P29547	415 aa	Known RBP	3.62	□□□□□ -1.83
CAF16	YFL028C	ALK2	P32789	676 aa	Predicted RBP	3.62	□□□□□ -1.83
CAF16	YFL028C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	3.62	□□□□□ -1.83	RIP-Chip
CAF16	YFL028C	SMB1	P40018	196 aa	Known RBP	3.62	□□□□□ -1.83
CAF16	YFL028C	EDC2	P40023	145 aa	Predicted RBP	3.62	□□□□□ -1.83
CAF16	YFL028C	YPL039W	Q03080	316 aa		3.62	□□□□□ -1.83
CAF16	YFL028C	IRC19	Q07843	230 aa		3.62	□□□□□ -1.83
CAF16	YFL028C	HRT1	Q08273	121 aa		3.62	□□□□□ -1.83
CAF16	YFL028C	YOR343C	Q12484	108 aa		3.62	□□□□□ -1.83
CAF16	YFL028C	ARG80	P07249	177 aa		3.61	□□□□□ -1.83
CAF16	YFL028C	COX10	P21592	462 aa		3.61	□□□□□ -1.83
CAF16	YFL028C	MDH2	P22133	377 aa		3.61	□□□□□ -1.83
CAF16	YFL028C	RPB9	P27999	122 aa		3.61	□□□□□ -1.83
CAF16	YFL028C	OAC1	P32332	324 aa		3.61	□□□□□ -1.83
CAF16	YFL028C	VPH2	P32341	215 aa		3.61	□□□□□ -1.83
CAF16	YFL028C	RPS20	P38701	121 aa	Known RBP	3.61	□□□□□ -1.83
CAF16	YFL028C	EGD2	P38879	174 aa	Known RBP	3.61	□□□□□ -1.83
CAF16	YFL028C	RFC4	P40339	323 aa	Known RBP	3.61	□□□□□ -1.83
CAF16	YFL028C	GVP36	P40531	326 aa	Known RBP	3.61	□□□□□ -1.83
CAF16	YFL028C	MNN5	P46982	586 aa		3.61	□□□□□ -1.83
CAF16	YFL028C	YGL101W	P53144	215 aa		3.61	□□□□□ -1.83
CAF16	YFL028C	CAX4	P53223	239 aa		3.61	□□□□□ -1.83
CAF16	YFL028C	GIS2	P53849	153 aa	Known RBP RIP-Chip data	3.61	□□□□□ -1.83	RIP-Chip
CAF16	YFL028C	FMP41	P53889	259 aa	Known RBP	3.61	□□□□□ -1.83
CAF16	YFL028C	ASI3	P53983	676 aa		3.61	□□□□□ -1.83
CAF16	YFL028C	GRX5	Q02784	150 aa		3.61	□□□□□ -1.83

Retrieved 100 of 5,963 RNA–protein pairs in 41.4 ms