RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR40, Length 97 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR40	snR40	TY1A-DR2	Q03964	440 aa	Known RBP	0.77	□□□□□ -2.29
snR40	snR40	BDS1	Q08347	646 aa		0.77	□□□□□ -2.29
snR40	snR40	VAC17	P25591	423 aa		0.76	□□□□□ -2.29
snR40	snR40	TSA1	P34760	196 aa	Known RBP	0.76	□□□□□ -2.29
snR40	snR40	POL12	P38121	705 aa	Predicted RBP	0.76	□□□□□ -2.29
snR40	snR40	SAF1	P38352	637 aa		0.76	□□□□□ -2.29
snR40	snR40	BFR2	Q06631	534 aa	Known RBP	0.76	□□□□□ -2.29
snR40	snR40	RAD59	Q12223	238 aa		0.76	□□□□□ -2.29
snR40	snR40	SFA1	P32771	386 aa		0.75	□□□□□ -2.29
snR40	snR40	NGR1	P32831	672 aa	Known RBP	0.75	□□□□□ -2.29
snR40	snR40	MKS1	P34072	584 aa		0.75	□□□□□ -2.29
snR40	snR40	SPO74	P45819	413 aa		0.75	□□□□□ -2.29
snR40	snR40	TY1A-DR3	Q12441	440 aa		0.75	□□□□□ -2.29
snR40	snR40	DFG16	Q99234	619 aa		0.75	□□□□□ -2.29
snR40	snR40	PGM2	P37012	569 aa	Known RBP	0.74	□□□□□ -2.29
snR40	snR40	YNR065C	P53751	1116 aa		0.74	□□□□□ -2.29
snR40	snR40	YDL206W	Q12424	762 aa		0.74	□□□□□ -2.29
snR40	snR40	BDF2	Q07442	638 aa		0.73	□□□□□ -2.29
snR40	snR40	STE6	P12866	1290 aa		0.72	□□□□□ -2.29
snR40	snR40	ALG14	P38242	237 aa		0.72	□□□□□ -2.29
snR40	snR40	MSN5	P52918	1224 aa		0.72	□□□□□ -2.29
snR40	snR40	ITT1	Q04638	464 aa		0.72	□□□□□ -2.29
snR40	snR40	TUB2	P02557	457 aa	Known RBP	0.71	□□□□□ -2.3
snR40	snR40	PRP6	P19735	899 aa	Predicted RBP	0.71	□□□□□ -2.3
snR40	snR40	SIT4	P20604	311 aa		0.71	□□□□□ -2.3
snR40	snR40	YHL008C	P38750	627 aa		0.7	□□□□□ -2.3
snR40	snR40	RRM3	P38766	723 aa		0.7	□□□□□ -2.3
snR40	snR40	FBP26	P32604	452 aa		0.69	□□□□□ -2.3
snR40	snR40	SSN3	P39073	555 aa		0.69	□□□□□ -2.3
snR40	snR40	SDH1	Q00711	640 aa		0.69	□□□□□ -2.3
snR40	snR40	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	0.69	□□□□□ -2.3	not detected
snR40	snR40	RSC6	P25632	483 aa		0.68	□□□□□ -2.3
snR40	snR40	MRPL16	P38064	232 aa		0.68	□□□□□ -2.3
snR40	snR40	SET1	P38827	1080 aa	Known RBP	0.68	□□□□□ -2.3
snR40	snR40	MSC7	P38694	644 aa		0.67	□□□□□ -2.3
snR40	snR40	SPR3	P41901	512 aa		0.67	□□□□□ -2.3
snR40	snR40	TBF1	Q02457	562 aa		0.67	□□□□□ -2.3
snR40	snR40	NAR1	P23503	491 aa	Known RBP	0.66	□□□□□ -2.3
snR40	snR40	AHP1	P38013	176 aa	Known RBP	0.66	□□□□□ -2.3
snR40	snR40	IOC3	P43596	787 aa		0.66	□□□□□ -2.3
snR40	snR40	PUS6	P53294	404 aa		0.66	□□□□□ -2.3
snR40	snR40	FRA1	Q07825	749 aa		0.66	□□□□□ -2.3
snR40	snR40	CLB5	P30283	435 aa		0.65	□□□□□ -2.31
snR40	snR40	NAM7	P30771	971 aa	Known RBP	0.65	□□□□□ -2.31
snR40	snR40	AKR1	P39010	764 aa		0.65	□□□□□ -2.31
snR40	snR40	DLD3	P39976	496 aa	Known RBP	0.65	□□□□□ -2.31
snR40	snR40	SLI1	P53304	468 aa		0.65	□□□□□ -2.31
snR40	snR40	GIS4	Q04233	774 aa		0.65	□□□□□ -2.31
snR40	snR40	STB3	Q12427	513 aa		0.65	□□□□□ -2.31
snR40	snR40	MSB1	P21339	1137 aa	Known RBP	0.64	□□□□□ -2.31
snR40	snR40	SLY41	P22215	453 aa		0.63	□□□□□ -2.31
snR40	snR40	RAD53	P22216	821 aa		0.63	□□□□□ -2.31
snR40	snR40	RGT1	P32862	1170 aa		0.63	□□□□□ -2.31
snR40	snR40	MSH6	Q03834	1242 aa		0.63	□□□□□ -2.31
snR40	snR40	ATF1	P40353	525 aa		0.62	□□□□□ -2.31
snR40	snR40	NOP1	P15646	327 aa	Known RBP	0.61	□□□□□ -2.31
snR40	snR40	PUS9	Q12069	462 aa		0.61	□□□□□ -2.31
snR40	snR40	SHM2	P37291	469 aa	Known RBP	0.6	□□□□□ -2.31
snR40	snR40	YAP7	Q08182	245 aa		0.6	□□□□□ -2.31
snR40	snR40	COX6	P00427	148 aa		0.59	□□□□□ -2.31
snR40	snR40	RPP2B	P02400	110 aa	Known RBP	0.59	□□□□□ -2.31
snR40	snR40	GCD1	P09032	578 aa	Predicted RBP	0.59	□□□□□ -2.31
snR40	snR40	CTS1	P29029	562 aa		0.59	□□□□□ -2.31
snR40	snR40	IRE1	P32361	1115 aa		0.59	□□□□□ -2.31
snR40	snR40	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	0.59	□□□□□ -2.31	not detected
snR40	snR40	REF2	P42073	533 aa	Predicted RBP	0.59	□□□□□ -2.31
snR40	snR40	ISU1	Q03020	165 aa		0.59	□□□□□ -2.31
snR40	snR40	TY1A-NL1	Q12391	440 aa	Known RBP	0.59	□□□□□ -2.31
snR40	snR40	PDC6	P26263	563 aa	Known RBP	0.58	□□□□□ -2.32
snR40	snR40	AIM3	P38266	947 aa	Known RBP	0.58	□□□□□ -2.32
snR40	snR40	CLU1	Q03690	1277 aa	Known RBP	0.58	□□□□□ -2.32
snR40	snR40	REC8	Q12188	680 aa		0.58	□□□□□ -2.32
snR40	snR40	ICT1	Q12385	394 aa		0.58	□□□□□ -2.32
snR40	snR40	RPP1A	P05318	106 aa	Predicted RBP	0.57	□□□□□ -2.32
snR40	snR40	SHM1	P37292	490 aa	Predicted RBP	0.57	□□□□□ -2.32
snR40	snR40	PRK1	P40494	810 aa		0.57	□□□□□ -2.32
snR40	snR40	JJJ2	P46997	583 aa		0.57	□□□□□ -2.32
snR40	snR40	RIM8	P53179	542 aa		0.57	□□□□□ -2.32
snR40	snR40	LGE1	Q02796	332 aa	Known RBP	0.57	□□□□□ -2.32
snR40	snR40	MAK21	Q12176	1025 aa	Known RBP	0.57	□□□□□ -2.32
snR40	snR40	RDS2	P19541	446 aa	Known RBP	0.56	□□□□□ -2.32
snR40	snR40	PSE1	P32337	1089 aa	Known RBP	0.56	□□□□□ -2.32
snR40	snR40	HSP78	P33416	811 aa		0.56	□□□□□ -2.32
snR40	snR40	NIS1	P53939	407 aa		0.56	□□□□□ -2.32
snR40	snR40	SCS3	P53012	380 aa		0.55	□□□□□ -2.32
snR40	snR40	YUR1	P26725	428 aa		0.54	□□□□□ -2.32
snR40	snR40	MSE1	P48525	536 aa		0.54	□□□□□ -2.32
snR40	snR40	CTF4	Q01454	927 aa		0.54	□□□□□ -2.32
snR40	snR40	AFT2	Q08957	416 aa		0.54	□□□□□ -2.32
snR40	snR40	TOD6	P34219	525 aa		0.53	□□□□□ -2.32
snR40	snR40	HEH2	Q03281	663 aa		0.53	□□□□□ -2.32
snR40	snR40	WTM2	Q12206	467 aa		0.53	□□□□□ -2.32
snR40	snR40	TMT1	P32643	299 aa		0.52	□□□□□ -2.33
snR40	snR40	TRM2	P33753	639 aa		0.52	□□□□□ -2.33
snR40	snR40	SLP1	Q12232	587 aa		0.52	□□□□□ -2.33
snR40	snR40	LEU1	P07264	779 aa	Known RBP	0.51	□□□□□ -2.33
snR40	snR40	CUE2	P36075	443 aa	Known RBP	0.51	□□□□□ -2.33
snR40	snR40	FIG4	P42837	879 aa		0.51	□□□□□ -2.33
snR40	snR40	MNN10	P50108	393 aa	Known RBP	0.51	□□□□□ -2.33
snR40	snR40	TY4B-P	A0A0B7P3V8	1104 aa		0.5	□□□□□ -2.33

Retrieved 100 of 5,963 RNA–protein pairs in 68.1 ms