RNA–Protein interactions for RNA: YJL029C

VPS53, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS53, Length 2,469 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS53YJL029C MSN5P52918 1224 aa4.58□□□□□ -1.68
VPS53YJL029C RAT1Q02792 1006 aaKnown RBP4.58□□□□□ -1.68
VPS53YJL029C YER156CP40093 338 aaKnown RBP4.57□□□□□ -1.68
VPS53YJL029C YMR1P47147 688 aaKnown RBP RIP-Chip data4.57□□□□□ -1.68not detected
VPS53YJL029C TUM1Q08686 304 aaKnown RBP4.57□□□□□ -1.68
VPS53YJL029C AIR2Q12476 344 aaKnown RBP4.57□□□□□ -1.68
VPS53YJL029C SET4P42948 560 aa4.56□□□□□ -1.68
VPS53YJL029C EAF6P47128 113 aa4.56□□□□□ -1.68
VPS53YJL029C TEA1P47988 759 aa4.56□□□□□ -1.68
VPS53YJL029C RRP46P53256 223 aaPredicted RBP4.56□□□□□ -1.68
VPS53YJL029C LPD1P09624 499 aaKnown RBP4.56□□□□□ -1.68
VPS53YJL029C MGA2P40578 1113 aa4.56□□□□□ -1.68
VPS53YJL029C PRD1P25375 712 aa4.55□□□□□ -1.68
VPS53YJL029C ERO1Q03103 563 aa4.55□□□□□ -1.68
VPS53YJL029C RTR1P40084 226 aaPredicted RBP4.55□□□□□ -1.68
VPS53YJL029C ZDS1P50111 915 aaKnown RBP4.55□□□□□ -1.68
VPS53YJL029C FPK1P53739 893 aa4.55□□□□□ -1.68
VPS53YJL029C RIX7Q07844 837 aaKnown RBP4.55□□□□□ -1.68
VPS53YJL029C SIT4P20604 311 aa4.54□□□□□ -1.68
VPS53YJL029C DBP1P24784 617 aaKnown RBP4.54□□□□□ -1.68
VPS53YJL029C KIN4Q01919 800 aa4.54□□□□□ -1.68
VPS53YJL029C YOL036WQ08206 761 aa4.54□□□□□ -1.68
VPS53YJL029C ALE1Q08548 619 aa4.54□□□□□ -1.68
VPS53YJL029C RPP0P05317 312 aaKnown RBP4.54□□□□□ -1.68
VPS53YJL029C RTG1P32607 177 aa4.54□□□□□ -1.68
VPS53YJL029C BUD27P43573 796 aaKnown RBP RIP-Chip data4.53□□□□□ -1.68not detected
VPS53YJL029C YJR008WP47085 338 aa4.53□□□□□ -1.68
VPS53YJL029C CST9Q06032 482 aa4.53□□□□□ -1.68
VPS53YJL029C GRX6Q12438 231 aa4.53□□□□□ -1.68
VPS53YJL029C GYP7P48365 746 aa4.52□□□□□ -1.69
VPS53YJL029C PEX21P50091 288 aa4.52□□□□□ -1.69
VPS53YJL029C BDF2Q07442 638 aa4.52□□□□□ -1.69
VPS53YJL029C NCR1Q12200 1170 aa4.52□□□□□ -1.69
VPS53YJL029C HAT1Q12341 374 aa4.52□□□□□ -1.69
VPS53YJL029C HKR1P41809 1802 aa4.52□□□□□ -1.69
VPS53YJL029C ARG8P18544 423 aa4.52□□□□□ -1.69
VPS53YJL029C SHC1P39000 512 aa4.52□□□□□ -1.69
VPS53YJL029C CWH41P53008 833 aa4.52□□□□□ -1.69
VPS53YJL029C IRC3Q06683 689 aa4.52□□□□□ -1.69
VPS53YJL029C YOL057WQ08225 711 aa4.52□□□□□ -1.69
VPS53YJL029C SER1P33330 395 aaKnown RBP4.51□□□□□ -1.69
VPS53YJL029C DNM1P54861 757 aa4.51□□□□□ -1.69
VPS53YJL029C SYF1Q04048 859 aaPredicted RBP4.51□□□□□ -1.69
VPS53YJL029C IOC2Q12072 812 aa4.51□□□□□ -1.69
VPS53YJL029C YNL035CP53962 389 aaKnown RBP4.51□□□□□ -1.69
VPS53YJL029C YPR204WQ08995 1032 aa4.51□□□□□ -1.69
VPS53YJL029C TRP5P00931 707 aaKnown RBP4.5□□□□□ -1.69
VPS53YJL029C UBP16Q02863 499 aa4.5□□□□□ -1.69
VPS53YJL029C UBX2Q04228 584 aa4.5□□□□□ -1.69
VPS53YJL029C THI22Q06490 572 aa4.5□□□□□ -1.69
VPS53YJL029C BMS1Q08965 1183 aaKnown RBP4.5□□□□□ -1.69
VPS53YJL029C COQ4O13525 335 aa4.5□□□□□ -1.69
VPS53YJL029C SMY1P32364 656 aaKnown RBP4.5□□□□□ -1.69
VPS53YJL029C SAC3P46674 1301 aa4.5□□□□□ -1.69
VPS53YJL029C PMD1P32634 1753 aa4.5□□□□□ -1.69
VPS53YJL029C FIG2P25653 1609 aa4.49□□□□□ -1.69
VPS53YJL029C SET1P38827 1080 aaKnown RBP4.49□□□□□ -1.69
VPS53YJL029C CST6P40535 587 aa4.49□□□□□ -1.69
VPS53YJL029C HEF3P53978 1044 aaKnown RBP4.49□□□□□ -1.69
VPS53YJL029C YDR306CQ06640 478 aa4.49□□□□□ -1.69
VPS53YJL029C CTI6Q08923 506 aa4.49□□□□□ -1.69
VPS53YJL029C VMA1P17255 1071 aaKnown RBP4.49□□□□□ -1.69
VPS53YJL029C YGL082WP53155 381 aa4.49□□□□□ -1.69
VPS53YJL029C PUS5Q06244 254 aa4.49□□□□□ -1.69
VPS53YJL029C ATG20Q07528 640 aa4.49□□□□□ -1.69
VPS53YJL029C YKU70P32807 602 aa4.48□□□□□ -1.69
VPS53YJL029C YRB30P53107 440 aaPredicted RBP4.48□□□□□ -1.69
VPS53YJL029C SQS1P53866 767 aaKnown RBP4.48□□□□□ -1.69
VPS53YJL029C SEC61P32915 480 aa4.47□□□□□ -1.69
VPS53YJL029C YDL144CQ07589 356 aa4.47□□□□□ -1.69
VPS53YJL029C RTT109Q07794 436 aa4.47□□□□□ -1.69
VPS53YJL029C SWI1P09547 1314 aa4.47□□□□□ -1.69
VPS53YJL029C RTG2P32608 588 aaKnown RBP4.47□□□□□ -1.69
VPS53YJL029C VPS29P38759 282 aa4.47□□□□□ -1.69
VPS53YJL029C MTC5Q03897 1148 aa4.47□□□□□ -1.69
VPS53YJL029C GYP5Q12344 894 aa4.47□□□□□ -1.69
VPS53YJL029C YLR278CQ05854 1341 aa4.46□□□□□ -1.7
VPS53YJL029C SUP35P05453 685 aaKnown RBP4.46□□□□□ -1.7
VPS53YJL029C RET1P22276 1149 aaKnown RBP4.46□□□□□ -1.7
VPS53YJL029C VPS27P40343 622 aaKnown RBP4.46□□□□□ -1.7
VPS53YJL029C MPP10P47083 593 aaKnown RBP4.46□□□□□ -1.7
VPS53YJL029C APL2P36000 726 aaPredicted RBP4.46□□□□□ -1.7
VPS53YJL029C SRT1Q03175 343 aa4.46□□□□□ -1.7
VPS53YJL029C FAS2P19097 1887 aaKnown RBP4.45□□□□□ -1.7
VPS53YJL029C HTA1P04911 132 aaKnown RBP4.45□□□□□ -1.7
VPS53YJL029C HTA2P04912 132 aa4.45□□□□□ -1.7
VPS53YJL029C MRP7P12687 371 aa4.45□□□□□ -1.7
VPS53YJL029C SSA4P22202 642 aaKnown RBP4.45□□□□□ -1.7
VPS53YJL029C SAS4Q04003 481 aa4.45□□□□□ -1.7
VPS53YJL029C TYW1Q08960 810 aaKnown RBP4.45□□□□□ -1.7
VPS53YJL029C DPH6Q12429 685 aa4.45□□□□□ -1.7
VPS53YJL029C MSM1P22438 575 aa4.45□□□□□ -1.7
VPS53YJL029C TPD3P31383 635 aa4.45□□□□□ -1.7
VPS53YJL029C GLC3P32775 704 aa4.45□□□□□ -1.7
VPS53YJL029C RPN1P38764 993 aaKnown RBP4.45□□□□□ -1.7
VPS53YJL029C JIP4Q03361 876 aa4.45□□□□□ -1.7
VPS53YJL029C VPS64Q03944 604 aa4.45□□□□□ -1.7
VPS53YJL029C DPL1Q05567 589 aa4.45□□□□□ -1.7
VPS53YJL029C CDC45Q08032 650 aa4.45□□□□□ -1.7
VPS53YJL029C PSF3Q12146 194 aa4.45□□□□□ -1.7
Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms