RNA–Protein interactions for RNA: YGL244W

RTF1, Transcript of Subunit of RNAPII-associated chromatin remodeling Paf1 complex, yeast

Gene RTF1, Length 1,677 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTF1	YGL244W	RPN1	P38764	993 aa	Known RBP	13.32	□□□□□ -0.28
RTF1	YGL244W	RMD1	Q03441	430 aa		13.32	□□□□□ -0.28
RTF1	YGL244W	CYC8	P14922	966 aa		13.31	□□□□□ -0.28
RTF1	YGL244W	ELM1	P32801	640 aa		13.31	□□□□□ -0.28
RTF1	YGL244W	MPE1	P35728	441 aa	Known RBP	13.31	□□□□□ -0.28
RTF1	YGL244W	CCT5	P40413	562 aa	Known RBP	13.31	□□□□□ -0.28
RTF1	YGL244W	STU2	P46675	888 aa		13.31	□□□□□ -0.28
RTF1	YGL244W	PDR18	P53756	1333 aa		13.31	□□□□□ -0.28
RTF1	YGL244W	HOS3	Q02959	697 aa	Known RBP	13.31	□□□□□ -0.28
RTF1	YGL244W	AIM9	P40053	627 aa	Known RBP	13.3	□□□□□ -0.28
RTF1	YGL244W	PEX14	P53112	341 aa		13.3	□□□□□ -0.28
RTF1	YGL244W	ETT1	Q08421	412 aa	Known RBP	13.3	□□□□□ -0.28
RTF1	YGL244W	NUP133	P36161	1157 aa		13.29	□□□□□ -0.28
RTF1	YGL244W	BRE1	Q07457	700 aa	Known RBP	13.29	□□□□□ -0.28
RTF1	YGL244W	SLM3	Q12093	417 aa		13.29	□□□□□ -0.28
RTF1	YGL244W	PRX1	P34227	261 aa	Known RBP	13.28	□□□□□ -0.28
RTF1	YGL244W	DNM1	P54861	757 aa		13.28	□□□□□ -0.28
RTF1	YGL244W	CST6	P40535	587 aa		13.28	□□□□□ -0.28
RTF1	YGL244W	PBY1	P38254	753 aa		13.27	□□□□□ -0.29
RTF1	YGL244W	ZDS2	P54786	942 aa		13.27	□□□□□ -0.29
RTF1	YGL244W	TCD1	P38756	429 aa		13.26	□□□□□ -0.29
RTF1	YGL244W	PRP5	P21372	849 aa	Predicted RBP	13.25	□□□□□ -0.29
RTF1	YGL244W	TTI1	P36097	1038 aa		13.25	□□□□□ -0.29
RTF1	YGL244W	RCR1	P38212	213 aa		13.25	□□□□□ -0.29
RTF1	YGL244W	NPR3	P38742	1146 aa		13.25	□□□□□ -0.29
RTF1	YGL244W	SSF1	P38789	453 aa	Predicted RBP	13.25	□□□□□ -0.29
RTF1	YGL244W	MRPS35	P53292	345 aa		13.25	□□□□□ -0.29
RTF1	YGL244W	TIM50	Q02776	476 aa		13.25	□□□□□ -0.29
RTF1	YGL244W	FRS2	P15625	503 aa	Known RBP	13.24	□□□□□ -0.29
RTF1	YGL244W	MLC1	P53141	149 aa		13.24	□□□□□ -0.29
RTF1	YGL244W	TPM1	P17536	199 aa	Known RBP	13.24	□□□□□ -0.29
RTF1	YGL244W	SSL2	Q00578	843 aa		13.24	□□□□□ -0.29
RTF1	YGL244W	ALE1	Q08548	619 aa		13.24	□□□□□ -0.29
RTF1	YGL244W	MBR1	P23493	339 aa		13.23	□□□□□ -0.29
RTF1	YGL244W	SPO22	P40511	975 aa		13.23	□□□□□ -0.29
RTF1	YGL244W	CTF18	P49956	741 aa		13.23	□□□□□ -0.29
RTF1	YGL244W	YMR196W	Q04336	1088 aa		13.23	□□□□□ -0.29
RTF1	YGL244W	TSR3	Q12094	313 aa	Known RBP	13.23	□□□□□ -0.29
RTF1	YGL244W	SWI1	P09547	1314 aa		13.23	□□□□□ -0.29
RTF1	YGL244W	SES1	P07284	462 aa	Known RBP	13.22	□□□□□ -0.29
RTF1	YGL244W	UBP12	P39538	1254 aa		13.22	□□□□□ -0.29
RTF1	YGL244W	INP54	Q08227	384 aa	Known RBP	13.22	□□□□□ -0.29
RTF1	YGL244W	YGL242C	P53066	181 aa		13.21	□□□□□ -0.29
RTF1	YGL244W	TRS33	Q99394	268 aa		13.21	□□□□□ -0.29
RTF1	YGL244W	ATE1	P16639	503 aa		13.21	□□□□□ -0.3
RTF1	YGL244W	MFT1	P33441	392 aa	Known RBP	13.21	□□□□□ -0.3
RTF1	YGL244W	XKS1	P42826	600 aa		13.21	□□□□□ -0.3
RTF1	YGL244W	YJR008W	P47085	338 aa		13.21	□□□□□ -0.3
RTF1	YGL244W	MSB3	P48566	633 aa	Predicted RBP	13.21	□□□□□ -0.3
RTF1	YGL244W	MIF2	P35201	549 aa		13.2	□□□□□ -0.3
RTF1	YGL244W	SFI1	Q12369	946 aa		13.2	□□□□□ -0.3
RTF1	YGL244W	CPA2	P03965	1118 aa	Known RBP	13.19	□□□□□ -0.3
RTF1	YGL244W	LTV1	P34078	463 aa		13.19	□□□□□ -0.3
RTF1	YGL244W	ALO1	P54783	526 aa	Known RBP	13.19	□□□□□ -0.3
RTF1	YGL244W	SGD1	Q06132	899 aa		13.19	□□□□□ -0.3
RTF1	YGL244W	LPD1	P09624	499 aa	Known RBP	13.18	□□□□□ -0.3
RTF1	YGL244W	KTR1	P27810	393 aa	Known RBP	13.18	□□□□□ -0.3
RTF1	YGL244W	MEC3	Q02574	474 aa		13.18	□□□□□ -0.3
RTF1	YGL244W	DDP1	Q99321	188 aa	Known RBP	13.18	□□□□□ -0.3
RTF1	YGL244W	PRP45	P28004	379 aa	Predicted RBP	13.18	□□□□□ -0.3
RTF1	YGL244W	CEP3	P40969	608 aa		13.18	□□□□□ -0.3
RTF1	YGL244W	MNR2	P35724	969 aa		13.17	□□□□□ -0.3
RTF1	YGL244W	PSK2	Q08217	1101 aa		13.17	□□□□□ -0.3
RTF1	YGL244W	ELG1	Q12050	791 aa		13.17	□□□□□ -0.3
RTF1	YGL244W	ENT3	P47160	408 aa		13.16	□□□□□ -0.3
RTF1	YGL244W	ARP5	P53946	755 aa		13.16	□□□□□ -0.3
RTF1	YGL244W	YPL150W	Q12152	901 aa		13.16	□□□□□ -0.3
RTF1	YGL244W	RDS1	P25611	832 aa		13.15	□□□□□ -0.3
RTF1	YGL244W	KTR3	P38130	404 aa	Predicted RBP	13.15	□□□□□ -0.3
RTF1	YGL244W	STM1	P39015	273 aa	Known RBP	13.15	□□□□□ -0.3
RTF1	YGL244W	TCB1	Q12466	1186 aa		13.15	□□□□□ -0.3
RTF1	YGL244W	YGR130C	P53278	816 aa		13.15	□□□□□ -0.31
RTF1	YGL244W	VPS64	Q03944	604 aa		13.13	□□□□□ -0.31
RTF1	YGL244W	YHL017W	P38745	532 aa		13.12	□□□□□ -0.31
RTF1	YGL244W	CIN4	P39110	191 aa		13.12	□□□□□ -0.31
RTF1	YGL244W	VID28	P40547	921 aa		13.12	□□□□□ -0.31
RTF1	YGL244W	THI12	P42883	340 aa		13.12	□□□□□ -0.31
RTF1	YGL244W	THI5	P43534	340 aa		13.12	□□□□□ -0.31
RTF1	YGL244W	THI11	P47183	340 aa		13.12	□□□□□ -0.31
RTF1	YGL244W	THI13	Q07748	340 aa		13.12	□□□□□ -0.31
RTF1	YGL244W	PIB2	P53191	635 aa		13.12	□□□□□ -0.31
RTF1	YGL244W	GPA1	P08539	472 aa		13.11	□□□□□ -0.31
RTF1	YGL244W	MAL33	P38157	468 aa		13.11	□□□□□ -0.31
RTF1	YGL244W	SET1	P38827	1080 aa	Known RBP	13.11	□□□□□ -0.31
RTF1	YGL244W	RAD26	P40352	1085 aa		13.11	□□□□□ -0.31
RTF1	YGL244W	RRM3	P38766	723 aa		13.1	□□□□□ -0.31
RTF1	YGL244W	CIC1	P38779	376 aa	Known RBP	13.09	□□□□□ -0.31
RTF1	YGL244W	YER130C	P39959	443 aa		13.09	□□□□□ -0.31
RTF1	YGL244W	SIS2	P36024	562 aa		13.08	□□□□□ -0.31
RTF1	YGL244W	SMC3	P47037	1230 aa		13.08	□□□□□ -0.31
RTF1	YGL244W	PGA3	Q12746	312 aa	Known RBP	13.08	□□□□□ -0.31
RTF1	YGL244W	OSM1	P21375	501 aa	Known RBP	13.08	□□□□□ -0.32
RTF1	YGL244W	SLA1	P32790	1244 aa		13.08	□□□□□ -0.32
RTF1	YGL244W	YKE2	P52553	114 aa		13.08	□□□□□ -0.32
RTF1	YGL244W	VPS60	Q03390	229 aa		13.08	□□□□□ -0.32
RTF1	YGL244W	HXT10	P43581	546 aa		13.07	□□□□□ -0.32
RTF1	YGL244W	YPT11	P48559	417 aa		13.07	□□□□□ -0.32
RTF1	YGL244W	RFC5	P38251	354 aa		13.06	□□□□□ -0.32
RTF1	YGL244W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	13.06	□□□□□ -0.32	not detected
RTF1	YGL244W	RMT2	Q03305	412 aa		13.06	□□□□□ -0.32

Retrieved 100 of 5,963 RNA–protein pairs in 64.1 ms