RNA–Protein interactions for RNA: ENST00000591877.1

VMP1-213, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 791 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-213ENST00000591877 WBP1LQ9NX94 342 aa13.12□□□□□ -0.31
VMP1-213ENST00000591877 KIAA1468Q9P260 1216 aa13.12□□□□□ -0.31
VMP1-213ENST00000591877 ADAMTS12P58397 1594 aa13.11□□□□□ -0.31
VMP1-213ENST00000591877 ZFRQ96KR1 1074 aaKnown RBP13.11□□□□□ -0.31
VMP1-213ENST00000591877 EMILIN3Q9NT22 766 aa13.11□□□□□ -0.31
VMP1-213ENST00000591877 KCNC4Q03721 635 aa13.1□□□□□ -0.31
VMP1-213ENST00000591877 LAPTM4BQ86VI4 370 aa13.1□□□□□ -0.31
VMP1-213ENST00000591877 GRIN2AQ12879 1464 aa13.09□□□□□ -0.31
VMP1-213ENST00000591877 TYW1BQ6NUM6 668 aa13.08□□□□□ -0.32
VMP1-213ENST00000591877 SEPT9Q9UHD8 586 aaPredicted RBP13.08□□□□□ -0.32
VMP1-213ENST00000591877 ERICH3Q5RHP9 1530 aa13.08□□□□□ -0.32
VMP1-213ENST00000591877 CEP170Q5SW79 1584 aa13.07□□□□□ -0.32
VMP1-213ENST00000591877 NYAP1Q6ZVC0 841 aa13.06□□□□□ -0.32
VMP1-213ENST00000591877 WDR70Q9NW82 654 aa13.06□□□□□ -0.32
VMP1-213ENST00000591877 FHAD1B1AJZ9 1412 aa13.05□□□□□ -0.32
VMP1-213ENST00000591877 MFSD10Q14728 455 aa13.05□□□□□ -0.32
VMP1-213ENST00000591877 FBXW7Q969H0 707 aa13.05□□□□□ -0.32
VMP1-213ENST00000591877 PHF14O94880 888 aa13.04□□□□□ -0.32
VMP1-213ENST00000591877 NUP160Q12769 1436 aa13.04□□□□□ -0.32
VMP1-213ENST00000591877 ERCC6L2Q5T890 1561 aa13.02□□□□□ -0.33
VMP1-213ENST00000591877 LCE2BO14633 110 aa13.01□□□□□ -0.33
VMP1-213ENST00000591877 SHROOM2Q13796 1616 aa13□□□□□ -0.33
VMP1-213ENST00000591877 C6orf132Q5T0Z8 1188 aa13□□□□□ -0.33
VMP1-213ENST00000591877 CADPS2Q86UW7 1296 aa13□□□□□ -0.33
VMP1-213ENST00000591877 KCNV2Q8TDN2 545 aa13□□□□□ -0.33
VMP1-213ENST00000591877 HPS5Q9UPZ3 1129 aa12.99□□□□□ -0.33
VMP1-213ENST00000591877 ONECUT3O60422 494 aaPredicted RBP12.98□□□□□ -0.33
VMP1-213ENST00000591877 GFRA3O60609 400 aa12.98□□□□□ -0.33
VMP1-213ENST00000591877 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.98□□□□□ -0.33
VMP1-213ENST00000591877 TSR3Q9UJK0 312 aaKnown RBP12.98□□□□□ -0.33
VMP1-213ENST00000591877 TRIM6-TRIM34B2RNG4 842 aa12.97□□□□□ -0.33
VMP1-213ENST00000591877 LAPTM4AQ15012 233 aa12.96□□□□□ -0.33
VMP1-213ENST00000591877 FAM98CQ17RN3 349 aaKnown RBP12.96□□□□□ -0.33
VMP1-213ENST00000591877 TRAF7Q6Q0C0 670 aa12.96□□□□□ -0.33
VMP1-213ENST00000591877 LRCH3Q96II8 777 aa12.96□□□□□ -0.33
VMP1-213ENST00000591877 RBM33Q96EV2 1170 aaKnown RBP12.95□□□□□ -0.34
VMP1-213ENST00000591877 IGF1RP08069 1367 aa12.94□□□□□ -0.34
VMP1-213ENST00000591877 KIF27Q86VH2 1401 aa12.94□□□□□ -0.34
VMP1-213ENST00000591877 RUSC2Q8N2Y8 1516 aa12.93□□□□□ -0.34
VMP1-213ENST00000591877 EPAS1Q99814 870 aa12.93□□□□□ -0.34
VMP1-213ENST00000591877 CUL7Q14999 1698 aa12.92□□□□□ -0.34
VMP1-213ENST00000591877 ARHGEF1Q92888 912 aaKnown RBP12.91□□□□□ -0.34
VMP1-213ENST00000591877 TULP1O00294 542 aaPredicted RBP12.9□□□□□ -0.34
VMP1-213ENST00000591877 LMOD2Q6P5Q4 547 aa12.89□□□□□ -0.35
VMP1-213ENST00000591877 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.89□□□□□ -0.35
VMP1-213ENST00000591877 PRG4Q92954 1404 aaPredicted RBP12.88□□□□□ -0.35
VMP1-213ENST00000591877 DPYSL4O14531 572 aa12.88□□□□□ -0.35
VMP1-213ENST00000591877 DDX12PQ92771 950 aa12.87□□□□□ -0.35
VMP1-213ENST00000591877 PRKD2Q9BZL6 878 aa12.87□□□□□ -0.35
VMP1-213ENST00000591877 PPP4CP60510 307 aa12.86□□□□□ -0.35
VMP1-213ENST00000591877 TMEM132AQ24JP5 1023 aa12.86□□□□□ -0.35
VMP1-213ENST00000591877 KIAA0586Q9BVV6 1533 aa12.85□□□□□ -0.35
VMP1-213ENST00000591877 ERICH6Q7L0X2 663 aa12.85□□□□□ -0.35
VMP1-213ENST00000591877 TSKSQ9UJT2 592 aa12.85□□□□□ -0.35
VMP1-213ENST00000591877 CARMIL1Q5VZK9 1371 aa12.84□□□□□ -0.35
VMP1-213ENST00000591877 TJAP1Q5JTD0 557 aa12.84□□□□□ -0.35
VMP1-213ENST00000591877 E2F4Q16254 413 aa12.83□□□□□ -0.36
VMP1-213ENST00000591877 NRG2O14511 850 aaPredicted RBP12.81□□□□□ -0.36
VMP1-213ENST00000591877 PACS2Q86VP3 889 aa12.81□□□□□ -0.36
VMP1-213ENST00000591877 CAMK2BQ13554 666 aa12.8□□□□□ -0.36
VMP1-213ENST00000591877 TSR1Q2NL82 804 aaKnown RBP12.8□□□□□ -0.36
VMP1-213ENST00000591877 PPP1R18Q6NYC8 613 aa12.8□□□□□ -0.36
VMP1-213ENST00000591877 SMAPO00193 183 aa12.79□□□□□ -0.36
VMP1-213ENST00000591877 SAMD7Q7Z3H4 446 aa12.79□□□□□ -0.36
VMP1-213ENST00000591877 GTF3C3Q9Y5Q9 886 aa12.79□□□□□ -0.36
VMP1-213ENST00000591877 MTRQ99707 1265 aa12.78□□□□□ -0.36
VMP1-213ENST00000591877 MAP3K7O43318 606 aa12.77□□□□□ -0.37
VMP1-213ENST00000591877 ADCY10Q96PN6 1610 aa12.77□□□□□ -0.37
VMP1-213ENST00000591877 KIF13AQ9H1H9 1805 aa12.76□□□□□ -0.37
VMP1-213ENST00000591877 IQGAP2Q13576 1575 aa12.76□□□□□ -0.37
VMP1-213ENST00000591877 EN1Q05925 392 aaPredicted RBP12.75□□□□□ -0.37
VMP1-213ENST00000591877 ZNF516Q92618 1163 aa12.75□□□□□ -0.37
VMP1-213ENST00000591877 RAPGEF2Q9Y4G8 1499 aa12.74□□□□□ -0.37
VMP1-213ENST00000591877 ZNF787Q6DD87 383 aa12.74□□□□□ -0.37
VMP1-213ENST00000591877 IL21Q9HBE4 155 aa12.74□□□□□ -0.37
VMP1-213ENST00000591877 TESPA1A2RU30 521 aaPredicted RBP12.73□□□□□ -0.37
VMP1-213ENST00000591877 V9GY48 417 aaPredicted RBP12.73□□□□□ -0.37
VMP1-213ENST00000591877 FAM198AQ9UFP1 575 aa12.72□□□□□ -0.37
VMP1-213ENST00000591877 ARIH1Q9Y4X5 557 aaPredicted RBP12.72□□□□□ -0.37
VMP1-213ENST00000591877 CDCA7LQ96GN5 454 aa12.71□□□□□ -0.37
VMP1-213ENST00000591877 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.71□□□□□ -0.37
VMP1-213ENST00000591877 DISP1Q96F81 1524 aa12.71□□□□□ -0.38
VMP1-213ENST00000591877 C3orf80F5H4A9 247 aa12.7□□□□□ -0.38
VMP1-213ENST00000591877 TIMELESSQ9UNS1 1208 aa12.7□□□□□ -0.38
VMP1-213ENST00000591877 MAPKBP1O60336 1514 aa12.69□□□□□ -0.38
VMP1-213ENST00000591877 PDZRN3Q9UPQ7 1066 aa12.69□□□□□ -0.38
VMP1-213ENST00000591877 CTTNBP2Q8WZ74 1663 aa12.69□□□□□ -0.38
VMP1-213ENST00000591877 PTPRGP23470 1445 aa12.69□□□□□ -0.38
VMP1-213ENST00000591877 UGGT2Q9NYU1 1516 aa12.68□□□□□ -0.38
VMP1-213ENST00000591877 RNF40O75150 1001 aa12.68□□□□□ -0.38
VMP1-213ENST00000591877 ZC3H15Q8WU90 426 aaKnown RBP12.68□□□□□ -0.38
VMP1-213ENST00000591877 CARMIL2Q6F5E8 1435 aa12.68□□□□□ -0.38
VMP1-213ENST00000591877 TNIKQ9UKE5 1360 aa12.68□□□□□ -0.38
VMP1-213ENST00000591877 PRXQ9BXM0 1461 aa12.67□□□□□ -0.38
VMP1-213ENST00000591877 PRSS12P56730 875 aa12.67□□□□□ -0.38
VMP1-213ENST00000591877 SMYD5Q6GMV2 418 aa12.67□□□□□ -0.38
VMP1-213ENST00000591877 NKX2-3Q8TAU0 364 aa12.67□□□□□ -0.38
VMP1-213ENST00000591877 ABCC10Q5T3U5 1492 aa12.66□□□□□ -0.38
VMP1-213ENST00000591877 DIP2BQ9P265 1576 aa12.66□□□□□ -0.38
VMP1-213ENST00000591877 PNMA3Q9UL41 463 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms