RNA–Protein interactions for RNA: ENST00000591877.1

VMP1-213, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 791 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-213ENST00000591877 AEBP2Q6ZN18 517 aaPredicted RBP33.63■■■□□ 2.97
VMP1-213ENST00000591877 CHIC1Q5VXU3 224 aa31.43■■■□□ 2.62
VMP1-213ENST00000591877 SENP3Q9H4L4 574 aaPredicted RBP28.68■■■□□ 2.18
VMP1-213ENST00000591877 PHF23Q9BUL5 403 aaPredicted RBP28.3■■■□□ 2.12
VMP1-213ENST00000591877 FOXD1Q16676 465 aa26.86■■□□□ 1.89
VMP1-213ENST00000591877 POTEDQ86YR6 584 aa25.5■■□□□ 1.67
VMP1-213ENST00000591877 MSH5O43196 834 aa25.23■■□□□ 1.63
VMP1-213ENST00000591877 PIAS4Q8N2W9 510 aaPredicted RBP24.98■■□□□ 1.59
VMP1-213ENST00000591877 PLPPR3Q6T4P5 718 aa24.89■■□□□ 1.58
VMP1-213ENST00000591877 PPP6R1Q9UPN7 881 aa24.78■■□□□ 1.56
VMP1-213ENST00000591877 ADRA2BP18089 450 aa24.68■■□□□ 1.54
VMP1-213ENST00000591877 MAPK8IP2Q13387 824 aaPredicted RBP22.84■■□□□ 1.25
VMP1-213ENST00000591877 DMRT2Q9Y5R5 561 aa22.68■■□□□ 1.22
VMP1-213ENST00000591877 SCAF1Q9H7N4 1312 aaKnown RBP22.49■■□□□ 1.19
VMP1-213ENST00000591877 CACNB1Q02641 598 aaPredicted RBP22.02■■□□□ 1.12
VMP1-213ENST00000591877 DCAF8L1A6NGE4 600 aa21.89■■□□□ 1.09
VMP1-213ENST00000591877 PPP4R3CPQ6ZMV5 832 aa21.8■■□□□ 1.08
VMP1-213ENST00000591877 HOXD11P31277 338 aaPredicted RBP21.65■■□□□ 1.06
VMP1-213ENST00000591877 RNF39Q9H2S5 420 aa21.51■■□□□ 1.03
VMP1-213ENST00000591877 CNKSR2Q8WXI2 1034 aa21.45■■□□□ 1.02
VMP1-213ENST00000591877 RNF216Q9NWF9 866 aaPredicted RBP21.37■■□□□ 1.01
VMP1-213ENST00000591877 C1QBPQ07021 282 aaKnown RBP21.14■□□□□ 0.97
VMP1-213ENST00000591877 DNAJC5BQ9UF47 199 aa20.89■□□□□ 0.93
VMP1-213ENST00000591877 NCBP3Q53F19 620 aaKnown RBP20.76■□□□□ 0.91
VMP1-213ENST00000591877 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.69■□□□□ 0.92e-6■□□□□ 11.1
VMP1-213ENST00000591877 NPM3O75607 178 aaKnown RBP20.51■□□□□ 0.87
VMP1-213ENST00000591877 U3KPZ7 1027 aaPredicted RBP20.19■□□□□ 0.82
VMP1-213ENST00000591877 SPINK5Q9NQ38 1064 aaPredicted RBP20.08■□□□□ 0.81
VMP1-213ENST00000591877 CAPN15O75808 1086 aa20.06■□□□□ 0.8
VMP1-213ENST00000591877 DSG3P32926 999 aa20.01■□□□□ 0.79
VMP1-213ENST00000591877 POTEHQ6S545 545 aa19.88■□□□□ 0.77
VMP1-213ENST00000591877 KCNA4P22459 653 aa19.73■□□□□ 0.75
VMP1-213ENST00000591877 SLC4A2P04920 1241 aa19.72■□□□□ 0.75
VMP1-213ENST00000591877 TRHP20396 242 aaPredicted RBP19.65■□□□□ 0.74
VMP1-213ENST00000591877 ABCB7O75027 752 aa19.59■□□□□ 0.73
VMP1-213ENST00000591877 APLP2Q06481 763 aa19.49■□□□□ 0.71
VMP1-213ENST00000591877 ZNF219Q9P2Y4 722 aaPredicted RBP19.49■□□□□ 0.71
VMP1-213ENST00000591877 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.37■□□□□ 0.69
VMP1-213ENST00000591877 HNRNPUL2Q1KMD3 747 aaKnown RBP19.37■□□□□ 0.69
VMP1-213ENST00000591877 SAMD1Q6SPF0 538 aaPredicted RBP19.26■□□□□ 0.67
VMP1-213ENST00000591877 RBM42Q9BTD8 480 aaKnown RBP19.05■□□□□ 0.64
VMP1-213ENST00000591877 POLA2Q14181 598 aa18.99■□□□□ 0.63
VMP1-213ENST00000591877 MYCNP04198 464 aaPredicted RBP18.94■□□□□ 0.62
VMP1-213ENST00000591877 CHRDL2Q6WN34 429 aa18.87■□□□□ 0.61
VMP1-213ENST00000591877 ATF5Q9Y2D1 282 aaPredicted RBP18.64■□□□□ 0.57
VMP1-213ENST00000591877 NISCHQ9Y2I1 1504 aa18.54■□□□□ 0.56
VMP1-213ENST00000591877 AKT1S1Q96B36 256 aa18.53■□□□□ 0.56
VMP1-213ENST00000591877 SLC4A1APQ9BWU0 796 aaKnown RBP18.51■□□□□ 0.55
VMP1-213ENST00000591877 FOXD4L1Q9NU39 408 aa18.51■□□□□ 0.55
VMP1-213ENST00000591877 ZBTB12Q9Y330 459 aaPredicted RBP18.46■□□□□ 0.55
VMP1-213ENST00000591877 SP7Q8TDD2 431 aaPredicted RBP18.41■□□□□ 0.54
VMP1-213ENST00000591877 REM2Q8IYK8 340 aaPredicted RBP18.4■□□□□ 0.54
VMP1-213ENST00000591877 OSCARQ8IYS5 282 aa18.4■□□□□ 0.54
VMP1-213ENST00000591877 PIP4P2Q8N4L2 257 aa18.34■□□□□ 0.53
VMP1-213ENST00000591877 PITPNM1O00562 1244 aa18.23■□□□□ 0.51
VMP1-213ENST00000591877 HAX1O00165 279 aa18.17■□□□□ 0.5
VMP1-213ENST00000591877 ZBTB22O15209 634 aa18.14■□□□□ 0.49
VMP1-213ENST00000591877 FXR2P51116 673 aaKnown RBP eCLIP18.13■□□□□ 0.49
VMP1-213ENST00000591877 EHMT2Q96KQ7 1210 aa17.96■□□□□ 0.47
VMP1-213ENST00000591877 EVX2Q03828 476 aa17.93■□□□□ 0.46
VMP1-213ENST00000591877 ATXN8OSP0DMR3 200 aa17.92■□□□□ 0.46
VMP1-213ENST00000591877 SPDYE2BA6NHP3 402 aa17.88■□□□□ 0.45
VMP1-213ENST00000591877 SPDYE6P0CI01 402 aa17.88■□□□□ 0.45
VMP1-213ENST00000591877 SPDYE2Q495Y8 402 aa17.88■□□□□ 0.45
VMP1-213ENST00000591877 FBLN2P98095 1184 aa17.87■□□□□ 0.45
VMP1-213ENST00000591877 CLEC11AQ9Y240 323 aa17.79■□□□□ 0.44
VMP1-213ENST00000591877 PRKAR2AP13861 404 aaKnown RBP17.76■□□□□ 0.43
VMP1-213ENST00000591877 MKRN4PQ13434 485 aaPredicted RBP17.72■□□□□ 0.43
VMP1-213ENST00000591877 SPDYE1Q8NFV5 336 aaPredicted RBP17.7■□□□□ 0.42
VMP1-213ENST00000591877 ZNF692Q9BU19 519 aaPredicted RBP17.66■□□□□ 0.42
VMP1-213ENST00000591877 SSUH2Q9Y2M2 353 aa17.59■□□□□ 0.41
VMP1-213ENST00000591877 C19orf67A6NJJ6 358 aa17.56■□□□□ 0.4
VMP1-213ENST00000591877 CHADLQ6NUI6 762 aa17.52■□□□□ 0.4
VMP1-213ENST00000591877 GABBR2O75899 941 aa17.46■□□□□ 0.39
VMP1-213ENST00000591877 CSRNP3Q8WYN3 585 aa17.46■□□□□ 0.39
VMP1-213ENST00000591877 PABPN1Q86U42 306 aaKnown RBP eCLIP17.39■□□□□ 0.37
VMP1-213ENST00000591877 PRR29P0C7W0 189 aa17.38■□□□□ 0.37
VMP1-213ENST00000591877 LHX8Q68G74 356 aa17.28■□□□□ 0.36
VMP1-213ENST00000591877 CD44P16070 742 aaKnown RBP17.16■□□□□ 0.34
VMP1-213ENST00000591877 FARP1Q9Y4F1 1045 aaPredicted RBP17.13■□□□□ 0.33
VMP1-213ENST00000591877 POTEIP0CG38 1075 aa17.1■□□□□ 0.33
VMP1-213ENST00000591877 DCBLD2Q96PD2 775 aa16.89■□□□□ 0.29
VMP1-213ENST00000591877 CLCN6P51797 869 aa16.88■□□□□ 0.29
VMP1-213ENST00000591877 ZRANB1Q9UGI0 708 aa16.87■□□□□ 0.29
VMP1-213ENST00000591877 CREBZFQ9NS37 354 aa16.83■□□□□ 0.28
VMP1-213ENST00000591877 ZNF579Q8NAF0 562 aaKnown RBP16.82■□□□□ 0.28
VMP1-213ENST00000591877 STAG3Q9UJ98 1225 aa16.74■□□□□ 0.27
VMP1-213ENST00000591877 GALR2O43603 387 aaPredicted RBP16.73■□□□□ 0.27
VMP1-213ENST00000591877 SPDYE4A6NLX3 237 aa16.64■□□□□ 0.25
VMP1-213ENST00000591877 PLSCR2Q9NRY7 297 aa16.63■□□□□ 0.25
VMP1-213ENST00000591877 PHF12Q96QT6 1004 aa16.61■□□□□ 0.25
VMP1-213ENST00000591877 PAK3O75914 559 aaPredicted RBP16.58■□□□□ 0.24
VMP1-213ENST00000591877 CCDC180Q9P1Z9 1646 aa16.58■□□□□ 0.24
VMP1-213ENST00000591877 POTEB2H3BUK9 544 aa16.55■□□□□ 0.24
VMP1-213ENST00000591877 OTUD5Q96G74 571 aa16.55■□□□□ 0.24
VMP1-213ENST00000591877 NPM1P06748 294 aaKnown RBP eCLIP16.47■□□□□ 0.23
VMP1-213ENST00000591877 MNX1P50219 401 aaPredicted RBP16.46■□□□□ 0.23
VMP1-213ENST00000591877 PELP1Q8IZL8 1130 aaKnown RBP16.45■□□□□ 0.22
VMP1-213ENST00000591877 ABCC9O60706 1549 aa16.42■□□□□ 0.22
VMP1-213ENST00000591877 MS4A3Q96HJ5 214 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms