RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 CCDC144AA2RUR9 1427 aa12.68□□□□□ -0.38
CCDC40-212ENST00000574799 POGZQ7Z3K3 1410 aa12.68□□□□□ -0.38
CCDC40-212ENST00000574799 ZNF326Q5BKZ1 582 aaKnown RBP12.68□□□□□ -0.38
CCDC40-212ENST00000574799 MYOM1P52179 1685 aa12.67□□□□□ -0.38
CCDC40-212ENST00000574799 PRKRIP1Q9H875 184 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-212ENST00000574799 TMC1Q8TDI8 760 aa12.67□□□□□ -0.38
CCDC40-212ENST00000574799 NUDCQ9Y266 331 aa12.66□□□□□ -0.38
CCDC40-212ENST00000574799 DIP2CQ9Y2E4 1556 aa12.66□□□□□ -0.38
CCDC40-212ENST00000574799 PDE4AP27815 886 aa12.66□□□□□ -0.38
CCDC40-212ENST00000574799 KIAA1210Q9ULL0 1709 aa12.66□□□□□ -0.38
CCDC40-212ENST00000574799 ZNF518AQ6AHZ1 1483 aa12.65□□□□□ -0.38
CCDC40-212ENST00000574799 SLC4A3P48751 1232 aa12.65□□□□□ -0.38
CCDC40-212ENST00000574799 SPAG9O60271 1321 aaKnown RBP12.65□□□□□ -0.38
CCDC40-212ENST00000574799 NBPF1Q3BBV0 1214 aa12.65□□□□□ -0.38
CCDC40-212ENST00000574799 PKNOX2Q96KN3 472 aa12.65□□□□□ -0.38
CCDC40-212ENST00000574799 MLH3Q9UHC1 1453 aa12.65□□□□□ -0.38
CCDC40-212ENST00000574799 TCERG1O14776 1098 aaKnown RBP12.65□□□□□ -0.39
CCDC40-212ENST00000574799 KIF1BO60333 1816 aa12.64□□□□□ -0.39
CCDC40-212ENST00000574799 PIK3C2BO00750 1634 aa12.64□□□□□ -0.39
CCDC40-212ENST00000574799 DCAF11Q8TEB1 546 aa12.64□□□□□ -0.39
CCDC40-212ENST00000574799 PPLO60437 1756 aa12.64□□□□□ -0.39
CCDC40-212ENST00000574799 GLI2P10070 1586 aa12.63□□□□□ -0.39
CCDC40-212ENST00000574799 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.63□□□□□ -0.39
CCDC40-212ENST00000574799 RSPH6AQ9H0K4 717 aa12.63□□□□□ -0.39
CCDC40-212ENST00000574799 CD109Q6YHK3 1445 aa12.63□□□□□ -0.39
CCDC40-212ENST00000574799 CAMSAP1Q5T5Y3 1602 aa12.62□□□□□ -0.39
CCDC40-212ENST00000574799 DIP2BQ9P265 1576 aa12.62□□□□□ -0.39
CCDC40-212ENST00000574799 CFAP65Q6ZU64 1925 aaKnown RBP12.61□□□□□ -0.39
CCDC40-212ENST00000574799 ZC3H13Q5T200 1668 aaKnown RBP12.61□□□□□ -0.39
CCDC40-212ENST00000574799 NRXN1Q9ULB1 1477 aa12.61□□□□□ -0.39
CCDC40-212ENST00000574799 COL17A1Q9UMD9 1497 aaPredicted RBP12.61□□□□□ -0.39
CCDC40-212ENST00000574799 FRAT1Q92837 279 aaPredicted RBP12.61□□□□□ -0.39
CCDC40-212ENST00000574799 TESK2Q96S53 571 aa12.61□□□□□ -0.39
CCDC40-212ENST00000574799 KIF13AQ9H1H9 1805 aa12.61□□□□□ -0.39
CCDC40-212ENST00000574799 SYNMO15061 1565 aa12.61□□□□□ -0.39
CCDC40-212ENST00000574799 ADGRB3O60242 1522 aa12.61□□□□□ -0.39
CCDC40-212ENST00000574799 VSIG10Q8N0Z9 540 aa12.6□□□□□ -0.39
CCDC40-212ENST00000574799 NAP1L5Q96NT1 182 aaPredicted RBP12.6□□□□□ -0.39
CCDC40-212ENST00000574799 MYO5BQ9ULV0 1848 aa12.6□□□□□ -0.39
CCDC40-212ENST00000574799 ST20-MTHFSA0A0A6YYL1 179 aa12.6□□□□□ -0.39
CCDC40-212ENST00000574799 NFKBIBQ15653 356 aa12.6□□□□□ -0.39
CCDC40-212ENST00000574799 KDM2AQ9Y2K7 1162 aa12.6□□□□□ -0.39
CCDC40-212ENST00000574799 DISP3Q9P2K9 1392 aa12.59□□□□□ -0.39
CCDC40-212ENST00000574799 ABCC3O15438 1527 aa12.59□□□□□ -0.39
CCDC40-212ENST00000574799 MYO3AQ8NEV4 1616 aa12.59□□□□□ -0.39
CCDC40-212ENST00000574799 EXOC6Q8TAG9 804 aa12.58□□□□□ -0.39
CCDC40-212ENST00000574799 NEO1Q92859 1461 aa12.58□□□□□ -0.4
CCDC40-212ENST00000574799 ROCK2O75116 1388 aaKnown RBP12.57□□□□□ -0.4
CCDC40-212ENST00000574799 NPATQ14207 1427 aa12.57□□□□□ -0.4
CCDC40-212ENST00000574799 CARD11Q9BXL7 1154 aa12.56□□□□□ -0.4
CCDC40-212ENST00000574799 ARID4BQ4LE39 1312 aaPredicted RBP12.56□□□□□ -0.4
CCDC40-212ENST00000574799 RGL3Q3MIN7 710 aa12.56□□□□□ -0.4
CCDC40-212ENST00000574799 MYOM2P54296 1465 aa12.55□□□□□ -0.4
CCDC40-212ENST00000574799 ZMYM4Q5VZL5 1548 aa12.55□□□□□ -0.4
CCDC40-212ENST00000574799 TSPOAP1O95153 1857 aa12.55□□□□□ -0.4
CCDC40-212ENST00000574799 YEATS2Q9ULM3 1422 aa12.54□□□□□ -0.4
CCDC40-212ENST00000574799 PER1O15534 1290 aaPredicted RBP12.54□□□□□ -0.4
CCDC40-212ENST00000574799 ADGRB1O14514 1584 aa12.53□□□□□ -0.4
CCDC40-212ENST00000574799 BACH2Q9BYV9 841 aa12.53□□□□□ -0.4
CCDC40-212ENST00000574799 RCAN3Q9UKA8 241 aa12.52□□□□□ -0.4
CCDC40-212ENST00000574799 PREX1Q8TCU6 1659 aa12.52□□□□□ -0.41
CCDC40-212ENST00000574799 WASHC2CQ9Y4E1 1318 aa12.52□□□□□ -0.41
CCDC40-212ENST00000574799 KIF3BO15066 747 aa12.51□□□□□ -0.41
CCDC40-212ENST00000574799 RAPGEF3O95398 923 aa12.51□□□□□ -0.41
CCDC40-212ENST00000574799 NOS1P29475 1434 aa12.5□□□□□ -0.41
CCDC40-212ENST00000574799 NEXMIFQ5QGS0 1516 aa12.5□□□□□ -0.41
CCDC40-212ENST00000574799 RGS3P49796 1198 aa12.5□□□□□ -0.41
CCDC40-212ENST00000574799 RRP1P56182 461 aaKnown RBP12.5□□□□□ -0.41
CCDC40-212ENST00000574799 SETBP1Q9Y6X0 1596 aa12.49□□□□□ -0.41
CCDC40-212ENST00000574799 MS4A1P11836 297 aa12.49□□□□□ -0.41
CCDC40-212ENST00000574799 FRAT2O75474 233 aaPredicted RBP12.49□□□□□ -0.41
CCDC40-212ENST00000574799 PARD3Q8TEW0 1356 aa12.48□□□□□ -0.41
CCDC40-212ENST00000574799 ARHGEF28Q8N1W1 1705 aaKnown RBP12.48□□□□□ -0.41
CCDC40-212ENST00000574799 TMEM131LA2VDJ0 1609 aa12.48□□□□□ -0.41
CCDC40-212ENST00000574799 SMG6Q86US8 1419 aaKnown RBP12.48□□□□□ -0.41
CCDC40-212ENST00000574799 SKAP1Q86WV1 359 aa12.48□□□□□ -0.41
CCDC40-212ENST00000574799 FAM43AQ8N2R8 423 aa12.48□□□□□ -0.41
CCDC40-212ENST00000574799 LRPPRCP42704 1394 aaKnown RBP12.48□□□□□ -0.41
CCDC40-212ENST00000574799 HSP90AA2PQ14568 343 aaPredicted RBP12.48□□□□□ -0.41
CCDC40-212ENST00000574799 PNNQ9H307 717 aaKnown RBP12.47□□□□□ -0.41
CCDC40-212ENST00000574799 PIK3C2GO75747 1445 aa12.47□□□□□ -0.41
CCDC40-212ENST00000574799 REREQ9P2R6 1566 aa12.47□□□□□ -0.41
CCDC40-212ENST00000574799 ADGRF5Q8IZF2 1346 aa12.47□□□□□ -0.41
CCDC40-212ENST00000574799 PLIN1O60240 522 aa12.47□□□□□ -0.41
CCDC40-212ENST00000574799 HSP90AA1P07900 732 aaKnown RBP12.47□□□□□ -0.41
CCDC40-212ENST00000574799 QRICH2Q9H0J4 1663 aa12.47□□□□□ -0.41
CCDC40-212ENST00000574799 ASXL1Q8IXJ9 1541 aa12.46□□□□□ -0.41
CCDC40-212ENST00000574799 SCAF11Q99590 1463 aaKnown RBP12.46□□□□□ -0.41
CCDC40-212ENST00000574799 KDM5AP29375 1690 aaKnown RBP12.46□□□□□ -0.41
CCDC40-212ENST00000574799 SETD1AO15047 1707 aaKnown RBP12.46□□□□□ -0.41
CCDC40-212ENST00000574799 ERVK-7P63135 1459 aa12.45□□□□□ -0.42
CCDC40-212ENST00000574799 SLKQ9H2G2 1235 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-212ENST00000574799 ARHGAP31Q2M1Z3 1444 aa12.44□□□□□ -0.42
CCDC40-212ENST00000574799 PNISRQ8TF01 805 aaKnown RBP12.43□□□□□ -0.42
CCDC40-212ENST00000574799 CYB5RLQ6IPT4 315 aa12.43□□□□□ -0.42
CCDC40-212ENST00000574799 KANK1Q14678 1352 aa12.42□□□□□ -0.42
CCDC40-212ENST00000574799 CLTCQ00610 1675 aaKnown RBP12.42□□□□□ -0.42
CCDC40-212ENST00000574799 L1TD1Q5T7N2 865 aaKnown RBP12.42□□□□□ -0.42
CCDC40-212ENST00000574799 ZMYND15Q9H091 742 aa12.42□□□□□ -0.42
CCDC40-212ENST00000574799 NPM1P06748 294 aaKnown RBP eCLIP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms