RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 E9PCH4 1651 aa17.7■□□□□ 0.42
CLK3-206ENST00000562078 TRPM1Q7Z4N2 1603 aa17.7■□□□□ 0.42
CLK3-206ENST00000562078 VSIG10Q8N0Z9 540 aa17.7■□□□□ 0.42
CLK3-206ENST00000562078 DCAF11Q8TEB1 546 aa17.7■□□□□ 0.42
CLK3-206ENST00000562078 TET3O43151 1660 aa17.7■□□□□ 0.42
CLK3-206ENST00000562078 TRHP20396 242 aaPredicted RBP17.7■□□□□ 0.42
CLK3-206ENST00000562078 FRAT1Q92837 279 aaPredicted RBP17.7■□□□□ 0.42
CLK3-206ENST00000562078 ZBED9Q6R2W3 1325 aa17.69■□□□□ 0.42
CLK3-206ENST00000562078 CEP152O94986 1710 aa17.69■□□□□ 0.42
CLK3-206ENST00000562078 VWDEQ8N2E2 1590 aa17.68■□□□□ 0.42
CLK3-206ENST00000562078 GLIPR1L2Q4G1C9 344 aa17.67■□□□□ 0.42
CLK3-206ENST00000562078 GGT6Q6P531 493 aa17.66■□□□□ 0.42
CLK3-206ENST00000562078 SPHKAPQ2M3C7 1700 aa17.66■□□□□ 0.42
CLK3-206ENST00000562078 CARD11Q9BXL7 1154 aa17.66■□□□□ 0.42
CLK3-206ENST00000562078 PODXL2Q9NZ53 605 aa17.66■□□□□ 0.42
CLK3-206ENST00000562078 COL17A1Q9UMD9 1497 aaPredicted RBP17.66■□□□□ 0.42
CLK3-206ENST00000562078 ATP10AO60312 1499 aa17.65■□□□□ 0.42
CLK3-206ENST00000562078 RGL3Q3MIN7 710 aa17.64■□□□□ 0.42
CLK3-206ENST00000562078 PRAG1Q86YV5 1406 aa17.64■□□□□ 0.41
CLK3-206ENST00000562078 FAM43AQ8N2R8 423 aa17.64■□□□□ 0.41
CLK3-206ENST00000562078 ROCK2O75116 1388 aaKnown RBP17.62■□□□□ 0.41
CLK3-206ENST00000562078 POLR3GLQ9BT43 218 aa17.62■□□□□ 0.41
CLK3-206ENST00000562078 EFCAB6Q5THR3 1501 aa17.62■□□□□ 0.41
CLK3-206ENST00000562078 NFKBIBQ15653 356 aa17.61■□□□□ 0.41
CLK3-206ENST00000562078 ARHGEF40Q8TER5 1519 aa17.61■□□□□ 0.41
CLK3-206ENST00000562078 MRS2Q9HD23 443 aa17.6■□□□□ 0.41
CLK3-206ENST00000562078 PRKRIP1Q9H875 184 aaPredicted RBP17.6■□□□□ 0.41
CLK3-206ENST00000562078 TRPM2O94759 1503 aa17.59■□□□□ 0.41
CLK3-206ENST00000562078 LMTK2Q8IWU2 1503 aa17.59■□□□□ 0.41
CLK3-206ENST00000562078 PDE4AP27815 886 aa17.59■□□□□ 0.41
CLK3-206ENST00000562078 LAMC1P11047 1609 aa17.58■□□□□ 0.41
CLK3-206ENST00000562078 CLTCL1P53675 1640 aa17.58■□□□□ 0.41
CLK3-206ENST00000562078 CFAP65Q6ZU64 1925 aaKnown RBP17.58■□□□□ 0.41
CLK3-206ENST00000562078 REREQ9P2R6 1566 aa17.58■□□□□ 0.41
CLK3-206ENST00000562078 CAMSAP1Q5T5Y3 1602 aa17.57■□□□□ 0.4
CLK3-206ENST00000562078 ABCC3O15438 1527 aa17.57■□□□□ 0.4
CLK3-206ENST00000562078 ZC3H13Q5T200 1668 aaKnown RBP17.57■□□□□ 0.4
CLK3-206ENST00000562078 ST20-MTHFSA0A0A6YYL1 179 aa17.57■□□□□ 0.4
CLK3-206ENST00000562078 ARID4BQ4LE39 1312 aaPredicted RBP17.55■□□□□ 0.4
CLK3-206ENST00000562078 RNF123Q5XPI4 1314 aa17.55■□□□□ 0.4
CLK3-206ENST00000562078 SIGLEC1Q9BZZ2 1709 aa17.55■□□□□ 0.4
CLK3-206ENST00000562078 PTPRTO14522 1441 aa17.54■□□□□ 0.4
CLK3-206ENST00000562078 SMG6Q86US8 1419 aaKnown RBP17.54■□□□□ 0.4
CLK3-206ENST00000562078 BACH2Q9BYV9 841 aa17.54■□□□□ 0.4
CLK3-206ENST00000562078 MADDQ8WXG6 1647 aa17.53■□□□□ 0.4
CLK3-206ENST00000562078 SENP3-EIF4A1A0A087X0R7 540 aa17.53■□□□□ 0.4
CLK3-206ENST00000562078 NBPF1Q3BBV0 1214 aa17.53■□□□□ 0.4
CLK3-206ENST00000562078 AGLP35573 1532 aa17.53■□□□□ 0.4
CLK3-206ENST00000562078 GPRASP1Q5JY77 1395 aa17.52■□□□□ 0.39
CLK3-206ENST00000562078 TCERG1O14776 1098 aaKnown RBP17.52■□□□□ 0.39
CLK3-206ENST00000562078 NPATQ14207 1427 aa17.52■□□□□ 0.39
CLK3-206ENST00000562078 SLC4A3P48751 1232 aa17.51■□□□□ 0.39
CLK3-206ENST00000562078 NUDCQ9Y266 331 aa17.51■□□□□ 0.39
CLK3-206ENST00000562078 CNGB1Q14028 1251 aaPredicted RBP17.5■□□□□ 0.39
CLK3-206ENST00000562078 KIF1BO60333 1816 aa17.5■□□□□ 0.39
CLK3-206ENST00000562078 UGGT1Q9NYU2 1555 aa17.49■□□□□ 0.39
CLK3-206ENST00000562078 MLECQ14165 292 aa17.49■□□□□ 0.39
CLK3-206ENST00000562078 RRAGDQ9NQL2 400 aaPredicted RBP17.49■□□□□ 0.39
CLK3-206ENST00000562078 IQGAP1P46940 1657 aa17.47■□□□□ 0.39
CLK3-206ENST00000562078 CLTCQ00610 1675 aaKnown RBP17.47■□□□□ 0.39
CLK3-206ENST00000562078 MROH2AA6NES4 1674 aa17.45■□□□□ 0.38
CLK3-206ENST00000562078 HSP90AA2PQ14568 343 aaPredicted RBP17.44■□□□□ 0.38
CLK3-206ENST00000562078 DDRGK1Q96HY6 314 aa17.44■□□□□ 0.38
CLK3-206ENST00000562078 ARHGAP31Q2M1Z3 1444 aa17.44■□□□□ 0.38
CLK3-206ENST00000562078 IFT172Q9UG01 1749 aa17.44■□□□□ 0.38
CLK3-206ENST00000562078 PREX1Q8TCU6 1659 aa17.43■□□□□ 0.38
CLK3-206ENST00000562078 FRAT2O75474 233 aaPredicted RBP17.43■□□□□ 0.38
CLK3-206ENST00000562078 PPP6R1Q9UPN7 881 aa17.42■□□□□ 0.38
CLK3-206ENST00000562078 ESF1Q9H501 851 aaKnown RBP17.41■□□□□ 0.38
CLK3-206ENST00000562078 DISP3Q9P2K9 1392 aa17.41■□□□□ 0.38
CLK3-206ENST00000562078 SYNMO15061 1565 aa17.41■□□□□ 0.38
CLK3-206ENST00000562078 CHGAP10645 457 aaKnown RBP17.41■□□□□ 0.38
CLK3-206ENST00000562078 EXOC6Q8TAG9 804 aa17.41■□□□□ 0.38
CLK3-206ENST00000562078 NEURL4Q96JN8 1562 aa17.41■□□□□ 0.38
CLK3-206ENST00000562078 NOS1P29475 1434 aa17.4■□□□□ 0.38
CLK3-206ENST00000562078 MS4A1P11836 297 aa17.4■□□□□ 0.38
CLK3-206ENST00000562078 KIAA1210Q9ULL0 1709 aa17.4■□□□□ 0.38
CLK3-206ENST00000562078 SKAP1Q86WV1 359 aa17.39■□□□□ 0.37
CLK3-206ENST00000562078 TESK2Q96S53 571 aa17.39■□□□□ 0.37
CLK3-206ENST00000562078 NAP1L5Q96NT1 182 aaPredicted RBP17.38■□□□□ 0.37
CLK3-206ENST00000562078 PIK3C2BO00750 1634 aa17.38■□□□□ 0.37
CLK3-206ENST00000562078 ADGRB3O60242 1522 aa17.37■□□□□ 0.37
CLK3-206ENST00000562078 RRP9O43818 475 aaKnown RBP17.37■□□□□ 0.37
CLK3-206ENST00000562078 HSP90AA1P07900 732 aaKnown RBP17.35■□□□□ 0.37
CLK3-206ENST00000562078 ERVK-7P63135 1459 aa17.34■□□□□ 0.37
CLK3-206ENST00000562078 MYOM2P54296 1465 aa17.34■□□□□ 0.37
CLK3-206ENST00000562078 FBXO31Q5XUX0 539 aaPredicted RBP17.34■□□□□ 0.37
CLK3-206ENST00000562078 PPLO60437 1756 aa17.33■□□□□ 0.37
CLK3-206ENST00000562078 SCAF11Q99590 1463 aaKnown RBP17.33■□□□□ 0.36
CLK3-206ENST00000562078 MYO5BQ9ULV0 1848 aa17.33■□□□□ 0.36
CLK3-206ENST00000562078 TMF1P82094 1093 aa17.32■□□□□ 0.36
CLK3-206ENST00000562078 STAC3Q96MF2 364 aa17.32■□□□□ 0.36
CLK3-206ENST00000562078 SLC52A1Q9NWF4 448 aa17.31■□□□□ 0.36
CLK3-206ENST00000562078 KTN1Q86UP2 1357 aaKnown RBP17.31■□□□□ 0.36
CLK3-206ENST00000562078 RRP1P56182 461 aaKnown RBP17.31■□□□□ 0.36
CLK3-206ENST00000562078 IDI1Q13907 227 aa17.3■□□□□ 0.36
CLK3-206ENST00000562078 MYBBP1AQ9BQG0 1328 aaKnown RBP17.3■□□□□ 0.36
CLK3-206ENST00000562078 FER1L4A9Z1Z3 1794 aa17.3■□□□□ 0.36
CLK3-206ENST00000562078 SPATA31D1Q6ZQQ2 1576 aa17.3■□□□□ 0.36
CLK3-206ENST00000562078 ZMYM3Q14202 1370 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms