RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 NLRP1Q9C000 1473 aa16.93■□□□□ 0.3
VPS29-208ENST00000550267 DEPDC5O75140 1603 aa16.92■□□□□ 0.3
VPS29-208ENST00000550267 CAMSAP2Q08AD1 1489 aa16.92■□□□□ 0.3
VPS29-208ENST00000550267 GALR2O43603 387 aaPredicted RBP16.91■□□□□ 0.3
VPS29-208ENST00000550267 IQGAP1P46940 1657 aa16.89■□□□□ 0.29
VPS29-208ENST00000550267 NCOA2Q15596 1464 aa16.88■□□□□ 0.29
VPS29-208ENST00000550267 LRRC7Q96NW7 1537 aa16.88■□□□□ 0.29
VPS29-208ENST00000550267 STRCP1A6NGW2 1772 aa16.87■□□□□ 0.29
VPS29-208ENST00000550267 RSPH4AQ5TD94 716 aa16.87■□□□□ 0.29
VPS29-208ENST00000550267 PHF12Q96QT6 1004 aa16.85■□□□□ 0.29
VPS29-208ENST00000550267 ARHGEF5Q12774 1597 aa16.85■□□□□ 0.29
VPS29-208ENST00000550267 RNF17Q9BXT8 1623 aaKnown RBP16.85■□□□□ 0.29
VPS29-208ENST00000550267 ABCC3O15438 1527 aa16.84■□□□□ 0.29
VPS29-208ENST00000550267 SYNMO15061 1565 aa16.84■□□□□ 0.29
VPS29-208ENST00000550267 TSPY4P0CV99 314 aa16.83■□□□□ 0.28
VPS29-208ENST00000550267 TSPY10P0CW01 314 aa16.83■□□□□ 0.28
VPS29-208ENST00000550267 ERVK-7P63135 1459 aa16.82■□□□□ 0.28
VPS29-208ENST00000550267 ZC3H13Q5T200 1668 aaKnown RBP16.81■□□□□ 0.28
VPS29-208ENST00000550267 MROH1Q8NDA8 1641 aa16.78■□□□□ 0.28
VPS29-208ENST00000550267 RGS17Q9UGC6 210 aaPredicted RBP16.78■□□□□ 0.28
VPS29-208ENST00000550267 UBR1Q8IWV7 1749 aa16.78■□□□□ 0.28
VPS29-208ENST00000550267 MAST1Q9Y2H9 1570 aa16.77■□□□□ 0.28
VPS29-208ENST00000550267 SCAF11Q99590 1463 aaKnown RBP16.77■□□□□ 0.28
VPS29-208ENST00000550267 EIF2AK4Q9P2K8 1649 aaKnown RBP16.77■□□□□ 0.27
VPS29-208ENST00000550267 CEP152O94986 1710 aa16.76■□□□□ 0.27
VPS29-208ENST00000550267 LTKP29376 864 aa16.75■□□□□ 0.27
VPS29-208ENST00000550267 TXNDC2Q86VQ3 553 aa16.74■□□□□ 0.27
VPS29-208ENST00000550267 ARHGAP23Q9P227 1491 aa16.73■□□□□ 0.27
VPS29-208ENST00000550267 SLIT1O75093 1534 aa16.73■□□□□ 0.27
VPS29-208ENST00000550267 XIRP1Q702N8 1843 aaKnown RBP16.72■□□□□ 0.27
VPS29-208ENST00000550267 LRRC9Q6ZRR7 1453 aa16.7■□□□□ 0.26
VPS29-208ENST00000550267 DUOX2Q9NRD8 1548 aa16.69■□□□□ 0.26
VPS29-208ENST00000550267 EID1Q9Y6B2 187 aa16.68■□□□□ 0.26
VPS29-208ENST00000550267 ARHGAP31Q2M1Z3 1444 aa16.68■□□□□ 0.26
VPS29-208ENST00000550267 FAM135BQ49AJ0 1406 aa16.68■□□□□ 0.26
VPS29-208ENST00000550267 CFAP65Q6ZU64 1925 aaKnown RBP16.67■□□□□ 0.26
VPS29-208ENST00000550267 POTEAQ6S8J7 498 aa16.67■□□□□ 0.26
VPS29-208ENST00000550267 PIK3C2BO00750 1634 aa16.67■□□□□ 0.26
VPS29-208ENST00000550267 PRDM15P57071 1507 aaPredicted RBP16.66■□□□□ 0.26
VPS29-208ENST00000550267 TMEM94Q12767 1356 aa16.65■□□□□ 0.26
VPS29-208ENST00000550267 TMEM2Q9UHN6 1383 aa16.65■□□□□ 0.26
VPS29-208ENST00000550267 MYOM3Q5VTT5 1437 aa16.64■□□□□ 0.25
VPS29-208ENST00000550267 KANK4Q5T7N3 995 aaPredicted RBP16.64■□□□□ 0.25
VPS29-208ENST00000550267 TSPYL2Q9H2G4 693 aaPredicted RBP16.64■□□□□ 0.25
VPS29-208ENST00000550267 KIF15Q9NS87 1388 aa16.64■□□□□ 0.25
VPS29-208ENST00000550267 RBM33Q96EV2 1170 aaKnown RBP16.63■□□□□ 0.25
VPS29-208ENST00000550267 MS4A3Q96HJ5 214 aa16.63■□□□□ 0.25
VPS29-208ENST00000550267 ROBO1Q9Y6N7 1651 aa16.62■□□□□ 0.25
VPS29-208ENST00000550267 VPS8Q8N3P4 1428 aa16.62■□□□□ 0.25
VPS29-208ENST00000550267 MAP3K1Q13233 1512 aa16.62■□□□□ 0.25
VPS29-208ENST00000550267 PLEKHG5O94827 1062 aa16.62■□□□□ 0.25
VPS29-208ENST00000550267 RRP7BPQ9NSQ0 103 aa16.62■□□□□ 0.25
VPS29-208ENST00000550267 ERBINQ96RT1 1412 aa16.62■□□□□ 0.25
VPS29-208ENST00000550267 KCNA6P17658 529 aa16.61■□□□□ 0.25
VPS29-208ENST00000550267 PROSER2Q86WR7 435 aaPredicted RBP16.61■□□□□ 0.25
VPS29-208ENST00000550267 SLC26A8Q96RN1 970 aa16.61■□□□□ 0.25
VPS29-208ENST00000550267 EFCAB6Q5THR3 1501 aa16.6■□□□□ 0.25
VPS29-208ENST00000550267 PELP1Q8IZL8 1130 aaKnown RBP16.6■□□□□ 0.25
VPS29-208ENST00000550267 MIER1Q8N108 512 aa16.6■□□□□ 0.25
VPS29-208ENST00000550267 CCDC61Q9Y6R9 512 aa16.6■□□□□ 0.25
VPS29-208ENST00000550267 IDI1Q13907 227 aa16.59■□□□□ 0.25
VPS29-208ENST00000550267 ASTLQ6HA08 431 aaPredicted RBP16.59■□□□□ 0.25
VPS29-208ENST00000550267 ABCC5O15440 1437 aa16.59■□□□□ 0.25
VPS29-208ENST00000550267 TET3O43151 1660 aa16.59■□□□□ 0.25
VPS29-208ENST00000550267 CROCC2H7BZ55 1655 aa16.58■□□□□ 0.24
VPS29-208ENST00000550267 KDM5AP29375 1690 aaKnown RBP16.57■□□□□ 0.24
VPS29-208ENST00000550267 KANK1Q14678 1352 aa16.57■□□□□ 0.24
VPS29-208ENST00000550267 POTEB2H3BUK9 544 aa16.57■□□□□ 0.24
VPS29-208ENST00000550267 NWD1Q149M9 1564 aa16.55■□□□□ 0.24
VPS29-208ENST00000550267 SETD1AO15047 1707 aaKnown RBP16.55■□□□□ 0.24
VPS29-208ENST00000550267 LMTK2Q8IWU2 1503 aa16.55■□□□□ 0.24
VPS29-208ENST00000550267 NKTRP30414 1462 aaKnown RBP16.54■□□□□ 0.24
VPS29-208ENST00000550267 ATMINO43313 823 aaPredicted RBP16.54■□□□□ 0.24
VPS29-208ENST00000550267 OTUD5Q96G74 571 aa16.54■□□□□ 0.24
VPS29-208ENST00000550267 ADGRB3O60242 1522 aa16.54■□□□□ 0.24
VPS29-208ENST00000550267 DAPK1P53355 1430 aa16.53■□□□□ 0.24
VPS29-208ENST00000550267 MSH6P52701 1360 aa16.53■□□□□ 0.24
VPS29-208ENST00000550267 PTPN23Q9H3S7 1636 aa16.53■□□□□ 0.24
VPS29-208ENST00000550267 BCANQ96GW7 911 aa16.52■□□□□ 0.24
VPS29-208ENST00000550267 PHLPP1O60346 1717 aa16.52■□□□□ 0.24
VPS29-208ENST00000550267 NOS1P29475 1434 aa16.52■□□□□ 0.23
VPS29-208ENST00000550267 JCADQ9P266 1359 aa16.51■□□□□ 0.23
VPS29-208ENST00000550267 KIF12Q96FN5 646 aa16.51■□□□□ 0.23
VPS29-208ENST00000550267 SLAIN2Q9P270 581 aa16.51■□□□□ 0.23
VPS29-208ENST00000550267 CHIC2Q9UKJ5 165 aa16.5■□□□□ 0.23
VPS29-208ENST00000550267 LOC105371045A0A1W2PR82 267 aa16.49■□□□□ 0.23
VPS29-208ENST00000550267 SLC39A7Q92504 469 aa16.49■□□□□ 0.23
VPS29-208ENST00000550267 C7P10643 843 aa16.48■□□□□ 0.23
VPS29-208ENST00000550267 ANKRD30AQ9BXX3 1397 aa16.48■□□□□ 0.23
VPS29-208ENST00000550267 SLC52A1Q9NWF4 448 aa16.47■□□□□ 0.23
VPS29-208ENST00000550267 METRNQ9UJH8 293 aa16.47■□□□□ 0.23
VPS29-208ENST00000550267 COL16A1Q07092 1604 aaPredicted RBP16.47■□□□□ 0.23
VPS29-208ENST00000550267 LRP6O75581 1613 aa16.46■□□□□ 0.23
VPS29-208ENST00000550267 ZFYVE9O95405 1425 aa16.45■□□□□ 0.22
VPS29-208ENST00000550267 FGD6Q6ZV73 1430 aa16.45■□□□□ 0.22
VPS29-208ENST00000550267 RASEFQ8IZ41 740 aa16.45■□□□□ 0.22
VPS29-208ENST00000550267 PLEKHG1Q9ULL1 1385 aa16.45■□□□□ 0.22
VPS29-208ENST00000550267 PLCD3Q8N3E9 789 aa16.44■□□□□ 0.22
VPS29-208ENST00000550267 RIMS2Q9UQ26 1411 aa16.44■□□□□ 0.22
VPS29-208ENST00000550267 CHD2O14647 1828 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms