RNA–Protein interactions for RNA: ENST00000530546.5

USP35-207, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 1 (best)

Gene USP35, Length 2,986 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-207ENST00000530546 PPRC1Q5VV67 1664 aaKnown RBP15.49■□□□□ 0.07
USP35-207ENST00000530546 BRD4O60885 1362 aaPredicted RBP15.49■□□□□ 0.07
USP35-207ENST00000530546 RNF17Q9BXT8 1623 aaKnown RBP15.48■□□□□ 0.07
USP35-207ENST00000530546 NLRP13Q86W25 1043 aa15.48■□□□□ 0.07
USP35-207ENST00000530546 SCAF11Q99590 1463 aaKnown RBP15.48■□□□□ 0.07
USP35-207ENST00000530546 HECW2Q9P2P5 1572 aa15.48■□□□□ 0.07
USP35-207ENST00000530546 CFAP65Q6ZU64 1925 aaKnown RBP15.48■□□□□ 0.07
USP35-207ENST00000530546 FRMPD1Q5SYB0 1578 aa15.47■□□□□ 0.07
USP35-207ENST00000530546 PARD3Q8TEW0 1356 aa15.47■□□□□ 0.07
USP35-207ENST00000530546 NUTM2DQ5VT03 806 aaPredicted RBP15.46■□□□□ 0.07
USP35-207ENST00000530546 SENP3Q9H4L4 574 aaPredicted RBP15.46■□□□□ 0.07
USP35-207ENST00000530546 NPATQ14207 1427 aa15.46■□□□□ 0.07
USP35-207ENST00000530546 FAM69CQ0P6D2 419 aa15.46■□□□□ 0.07
USP35-207ENST00000530546 NOP58Q9Y2X3 529 aaKnown RBP15.45■□□□□ 0.06
USP35-207ENST00000530546 NEO1Q92859 1461 aa15.45■□□□□ 0.06
USP35-207ENST00000530546 ABCA6Q8N139 1617 aa15.45■□□□□ 0.06
USP35-207ENST00000530546 PPP4R2Q9NY27 417 aa15.45■□□□□ 0.06
USP35-207ENST00000530546 NOS1P29475 1434 aa15.44■□□□□ 0.06
USP35-207ENST00000530546 KNSTRNQ9Y448 316 aa15.44■□□□□ 0.06
USP35-207ENST00000530546 CDCA8Q53HL2 280 aa15.43■□□□□ 0.06
USP35-207ENST00000530546 LMTK2Q8IWU2 1503 aa15.43■□□□□ 0.06
USP35-207ENST00000530546 EIF3AQ14152 1382 aaKnown RBP15.43■□□□□ 0.06
USP35-207ENST00000530546 IQGAP1P46940 1657 aa15.42■□□□□ 0.06
USP35-207ENST00000530546 NUDCQ9Y266 331 aa15.42■□□□□ 0.06
USP35-207ENST00000530546 YEATS2Q9ULM3 1422 aa15.42■□□□□ 0.06
USP35-207ENST00000530546 KIF1BO60333 1816 aa15.42■□□□□ 0.06
USP35-207ENST00000530546 LRPPRCP42704 1394 aaKnown RBP15.42■□□□□ 0.06
USP35-207ENST00000530546 TRAK1Q9UPV9 953 aa15.41■□□□□ 0.06
USP35-207ENST00000530546 MROH2AA6NES4 1674 aa15.41■□□□□ 0.06
USP35-207ENST00000530546 TMEM132EQ6IEE7 984 aa15.41■□□□□ 0.06
USP35-207ENST00000530546 MAP3K4Q9Y6R4 1608 aa15.4■□□□□ 0.06
USP35-207ENST00000530546 ABCC3O15438 1527 aa15.4■□□□□ 0.06
USP35-207ENST00000530546 MYOM2P54296 1465 aa15.4■□□□□ 0.06
USP35-207ENST00000530546 SMG6Q86US8 1419 aaKnown RBP15.4■□□□□ 0.06
USP35-207ENST00000530546 DIP2CQ9Y2E4 1556 aa15.38■□□□□ 0.05
USP35-207ENST00000530546 ADGRB3O60242 1522 aa15.36■□□□□ 0.05
USP35-207ENST00000530546 RIMBP3CA6NJZ7 1639 aa15.36■□□□□ 0.05
USP35-207ENST00000530546 RIMBP3BA6NNM3 1639 aa15.36■□□□□ 0.05
USP35-207ENST00000530546 RIMBP3Q9UFD9 1639 aa15.36■□□□□ 0.05
USP35-207ENST00000530546 AMER1Q5JTC6 1135 aaPredicted RBP15.36■□□□□ 0.05
USP35-207ENST00000530546 B4GALNT3Q6L9W6 998 aa15.36■□□□□ 0.05
USP35-207ENST00000530546 NEURL4Q96JN8 1562 aa15.35■□□□□ 0.05
USP35-207ENST00000530546 IDI1Q13907 227 aa15.35■□□□□ 0.05
USP35-207ENST00000530546 PPP2R1AP30153 589 aa15.35■□□□□ 0.05
USP35-207ENST00000530546 CENPJQ9HC77 1338 aaPredicted RBP15.35■□□□□ 0.05
USP35-207ENST00000530546 NBR1Q14596 966 aa15.34■□□□□ 0.05
USP35-207ENST00000530546 C14orf93Q9H972 538 aaKnown RBP15.34■□□□□ 0.05
USP35-207ENST00000530546 RTL5Q5HYW3 569 aaPredicted RBP15.34■□□□□ 0.05
USP35-207ENST00000530546 RICTORQ6R327 1708 aa15.33■□□□□ 0.04
USP35-207ENST00000530546 KIAA1210Q9ULL0 1709 aa15.33■□□□□ 0.04
USP35-207ENST00000530546 CAMSAP1Q5T5Y3 1602 aa15.33■□□□□ 0.04
USP35-207ENST00000530546 ERVK-7P63135 1459 aa15.33■□□□□ 0.04
USP35-207ENST00000530546 UBE2Q2Q8WVN8 375 aa15.32■□□□□ 0.04
USP35-207ENST00000530546 IFT172Q9UG01 1749 aa15.32■□□□□ 0.04
USP35-207ENST00000530546 NRXN1Q9ULB1 1477 aa15.32■□□□□ 0.04
USP35-207ENST00000530546 FBXO31Q5XUX0 539 aaPredicted RBP15.32■□□□□ 0.04
USP35-207ENST00000530546 DAXXQ9UER7 740 aaPredicted RBP15.32■□□□□ 0.04
USP35-207ENST00000530546 RPGRIP1LQ68CZ1 1315 aa15.32■□□□□ 0.04
USP35-207ENST00000530546 MLECQ14165 292 aa15.31■□□□□ 0.04
USP35-207ENST00000530546 ADAMTS8Q9UP79 889 aa15.31■□□□□ 0.04
USP35-207ENST00000530546 SAFB2Q14151 953 aaKnown RBP eCLIP15.31■□□□□ 0.04
USP35-207ENST00000530546 CDCA7LQ96GN5 454 aa15.31■□□□□ 0.04
USP35-207ENST00000530546 PIK3C2GO75747 1445 aa15.31■□□□□ 0.04
USP35-207ENST00000530546 TSPOAP1O95153 1857 aa15.31■□□□□ 0.04
USP35-207ENST00000530546 VGFO15240 615 aaPredicted RBP15.3■□□□□ 0.04
USP35-207ENST00000530546 WDR43Q15061 677 aaKnown RBP eCLIP15.3■□□□□ 0.04
USP35-207ENST00000530546 SYNMO15061 1565 aa15.3■□□□□ 0.04
USP35-207ENST00000530546 SIGLEC1Q9BZZ2 1709 aa15.3■□□□□ 0.04
USP35-207ENST00000530546 CARD14Q9BXL6 1004 aa15.3■□□□□ 0.04
USP35-207ENST00000530546 STK26Q9P289 416 aa15.3■□□□□ 0.04
USP35-207ENST00000530546 PAK3O75914 559 aaPredicted RBP15.29■□□□□ 0.04
USP35-207ENST00000530546 ASXL1Q8IXJ9 1541 aa15.29■□□□□ 0.04
USP35-207ENST00000530546 GLI2P10070 1586 aa15.29■□□□□ 0.04
USP35-207ENST00000530546 KDM5AP29375 1690 aaKnown RBP15.28■□□□□ 0.04
USP35-207ENST00000530546 SLC12A5Q9H2X9 1139 aa15.28■□□□□ 0.04
USP35-207ENST00000530546 PPLO60437 1756 aa15.27■□□□□ 0.03
USP35-207ENST00000530546 IPO9Q96P70 1041 aaKnown RBP15.27■□□□□ 0.03
USP35-207ENST00000530546 SLC52A1Q9NWF4 448 aa15.27■□□□□ 0.03
USP35-207ENST00000530546 STAG3Q9UJ98 1225 aa15.27■□□□□ 0.03
USP35-207ENST00000530546 DIP2BQ9P265 1576 aa15.27■□□□□ 0.03
USP35-207ENST00000530546 MYOM1P52179 1685 aa15.26■□□□□ 0.03
USP35-207ENST00000530546 ANP32AP39687 249 aaKnown RBP15.26■□□□□ 0.03
USP35-207ENST00000530546 TNNT2P45379 298 aaPredicted RBP15.26■□□□□ 0.03
USP35-207ENST00000530546 ARHGAP31Q2M1Z3 1444 aa15.25■□□□□ 0.03
USP35-207ENST00000530546 RCAN3Q9UKA8 241 aa15.24■□□□□ 0.03
USP35-207ENST00000530546 CCDC146Q8IYE0 955 aa15.24■□□□□ 0.03
USP35-207ENST00000530546 RNF123Q5XPI4 1314 aa15.24■□□□□ 0.03
USP35-207ENST00000530546 ADGRB1O14514 1584 aa15.24■□□□□ 0.03
USP35-207ENST00000530546 BLMP54132 1417 aaPredicted RBP15.23■□□□□ 0.03
USP35-207ENST00000530546 SETBP1Q9Y6X0 1596 aa15.23■□□□□ 0.03
USP35-207ENST00000530546 PDE3BQ13370 1112 aa15.23■□□□□ 0.03
USP35-207ENST00000530546 SBNO2Q9Y2G9 1366 aa15.23■□□□□ 0.03
USP35-207ENST00000530546 NEXMIFQ5QGS0 1516 aa15.22■□□□□ 0.03
USP35-207ENST00000530546 EIF5BO60841 1220 aaKnown RBP15.22■□□□□ 0.03
USP35-207ENST00000530546 CABP2Q9NPB3 220 aa15.22■□□□□ 0.03
USP35-207ENST00000530546 PIK3C2BO00750 1634 aa15.22■□□□□ 0.03
USP35-207ENST00000530546 IL27Q8NEV9 243 aa15.21■□□□□ 0.03
USP35-207ENST00000530546 CCDC136Q96JN2 1154 aa15.21■□□□□ 0.03
USP35-207ENST00000530546 NSD3Q9BZ95 1437 aa15.21■□□□□ 0.03
USP35-207ENST00000530546 RRP1P56182 461 aaKnown RBP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms