RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 SPAG9O60271 1321 aaKnown RBP13.39□□□□□ -0.27
USP48-212ENST00000527823 KIAA1107Q9UPP5 1409 aa13.39□□□□□ -0.27
USP48-212ENST00000527823 RNF17Q9BXT8 1623 aaKnown RBP13.39□□□□□ -0.27
USP48-212ENST00000527823 STK25O00506 426 aa13.39□□□□□ -0.27
USP48-212ENST00000527823 UBTFP17480 764 aaKnown RBP13.39□□□□□ -0.27
USP48-212ENST00000527823 PLEKHH2Q8IVE3 1493 aa13.39□□□□□ -0.27
USP48-212ENST00000527823 SHANK2Q9UPX8 1470 aa13.39□□□□□ -0.27
USP48-212ENST00000527823 SYNMO15061 1565 aa13.39□□□□□ -0.27
USP48-212ENST00000527823 DEPDC5O75140 1603 aa13.39□□□□□ -0.27
USP48-212ENST00000527823 IQGAP1P46940 1657 aa13.38□□□□□ -0.27
USP48-212ENST00000527823 KDM5DQ9BY66 1539 aa13.38□□□□□ -0.27
USP48-212ENST00000527823 FAM135AQ9P2D6 1515 aa13.38□□□□□ -0.27
USP48-212ENST00000527823 HS6ST3Q8IZP7 471 aa13.37□□□□□ -0.27
USP48-212ENST00000527823 MS4A3Q96HJ5 214 aa13.37□□□□□ -0.27
USP48-212ENST00000527823 PZPP20742 1482 aa13.36□□□□□ -0.27
USP48-212ENST00000527823 PDAP1Q13442 181 aaKnown RBP13.36□□□□□ -0.27
USP48-212ENST00000527823 BBXQ8WY36 941 aaPredicted RBP13.35□□□□□ -0.27
USP48-212ENST00000527823 BCL11BQ9C0K0 894 aaPredicted RBP13.35□□□□□ -0.27
USP48-212ENST00000527823 ZNF777Q9ULD5 760 aaPredicted RBP13.35□□□□□ -0.27
USP48-212ENST00000527823 ZC3H13Q5T200 1668 aaKnown RBP13.34□□□□□ -0.27
USP48-212ENST00000527823 PSEN1P49768 467 aa13.34□□□□□ -0.27
USP48-212ENST00000527823 PIP4K2BP78356 416 aa13.34□□□□□ -0.27
USP48-212ENST00000527823 STK24Q9Y6E0 443 aa13.34□□□□□ -0.27
USP48-212ENST00000527823 HNRNPMP52272 730 aaKnown RBP eCLIP13.33□□□□□ -0.284e-7■■■■□ 25
USP48-212ENST00000527823 MED14O60244 1454 aa13.33□□□□□ -0.28
USP48-212ENST00000527823 MBD5Q9P267 1494 aa13.33□□□□□ -0.28
USP48-212ENST00000527823 TNRQ92752 1358 aa13.32□□□□□ -0.28
USP48-212ENST00000527823 GGT6Q6P531 493 aa13.32□□□□□ -0.28
USP48-212ENST00000527823 XIRP1Q702N8 1843 aaKnown RBP13.32□□□□□ -0.28
USP48-212ENST00000527823 EHBP1L1Q8N3D4 1523 aa13.31□□□□□ -0.28
USP48-212ENST00000527823 TRPC6Q9Y210 931 aa13.31□□□□□ -0.28
USP48-212ENST00000527823 UGGT1Q9NYU2 1555 aa13.31□□□□□ -0.28
USP48-212ENST00000527823 GALR2O43603 387 aaPredicted RBP13.3□□□□□ -0.28
USP48-212ENST00000527823 NPHP4O75161 1426 aaPredicted RBP13.3□□□□□ -0.28
USP48-212ENST00000527823 NLRP1Q9C000 1473 aa13.29□□□□□ -0.28
USP48-212ENST00000527823 TOM1O60784 492 aa13.29□□□□□ -0.28
USP48-212ENST00000527823 CCNB3Q8WWL7 1395 aa13.29□□□□□ -0.28
USP48-212ENST00000527823 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.29□□□□□ -0.28
USP48-212ENST00000527823 RTEL1-TNFRSF6BF6WH68 1400 aa13.29□□□□□ -0.28
USP48-212ENST00000527823 LRRC7Q96NW7 1537 aa13.29□□□□□ -0.28
USP48-212ENST00000527823 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.28□□□□□ -0.28
USP48-212ENST00000527823 CCDC141Q6ZP82 1450 aa13.27□□□□□ -0.29
USP48-212ENST00000527823 UBR1Q8IWV7 1749 aa13.27□□□□□ -0.29
USP48-212ENST00000527823 SETD1AO15047 1707 aaKnown RBP13.26□□□□□ -0.29
USP48-212ENST00000527823 CFDP1Q9UEE9 299 aaPredicted RBP13.26□□□□□ -0.29
USP48-212ENST00000527823 CEP152O94986 1710 aa13.25□□□□□ -0.29
USP48-212ENST00000527823 MROH1Q8NDA8 1641 aa13.25□□□□□ -0.29
USP48-212ENST00000527823 CAMSAP2Q08AD1 1489 aa13.25□□□□□ -0.29
USP48-212ENST00000527823 DHX29Q7Z478 1369 aaKnown RBP13.25□□□□□ -0.29
USP48-212ENST00000527823 ZNF644Q9H582 1327 aaPredicted RBP13.25□□□□□ -0.29
USP48-212ENST00000527823 FBXO31Q5XUX0 539 aaPredicted RBP13.25□□□□□ -0.29
USP48-212ENST00000527823 ABCC3O15438 1527 aa13.24□□□□□ -0.29
USP48-212ENST00000527823 PLCB2Q00722 1185 aa13.24□□□□□ -0.29
USP48-212ENST00000527823 MTUS2Q5JR59 1369 aa13.23□□□□□ -0.29
USP48-212ENST00000527823 NKX1-1Q15270 411 aaPredicted RBP13.23□□□□□ -0.29
USP48-212ENST00000527823 PAXIP1Q6ZW49 1069 aaPredicted RBP13.23□□□□□ -0.29
USP48-212ENST00000527823 CEP162Q5TB80 1403 aa13.22□□□□□ -0.29
USP48-212ENST00000527823 MIA2Q96PC5 1412 aa13.22□□□□□ -0.29
USP48-212ENST00000527823 EIF2AK4Q9P2K8 1649 aaKnown RBP13.22□□□□□ -0.29
USP48-212ENST00000527823 CFAP44Q96MT7 982 aa13.22□□□□□ -0.29
USP48-212ENST00000527823 TMEM106CQ9BVX2 250 aa13.22□□□□□ -0.29
USP48-212ENST00000527823 ARHGEF5Q12774 1597 aa13.22□□□□□ -0.29
USP48-212ENST00000527823 ERVK-7P63135 1459 aa13.22□□□□□ -0.29
USP48-212ENST00000527823 GABBR2O75899 941 aa13.21□□□□□ -0.29
USP48-212ENST00000527823 CLCN6P51797 869 aa13.21□□□□□ -0.29
USP48-212ENST00000527823 CABP2Q9NPB3 220 aa13.2□□□□□ -0.3
USP48-212ENST00000527823 ANKLE2Q86XL3 938 aa13.19□□□□□ -0.3
USP48-212ENST00000527823 RGS17Q9UGC6 210 aaPredicted RBP13.19□□□□□ -0.3
USP48-212ENST00000527823 MAST1Q9Y2H9 1570 aa13.19□□□□□ -0.3
USP48-212ENST00000527823 KIF3BO15066 747 aa13.18□□□□□ -0.3
USP48-212ENST00000527823 CFAP65Q6ZU64 1925 aaKnown RBP13.17□□□□□ -0.3
USP48-212ENST00000527823 NCOA2Q15596 1464 aa13.17□□□□□ -0.3
USP48-212ENST00000527823 SCAF11Q99590 1463 aaKnown RBP13.17□□□□□ -0.3
USP48-212ENST00000527823 SPRYD3Q8NCJ5 442 aa13.17□□□□□ -0.3
USP48-212ENST00000527823 BMP2KQ9NSY1 1161 aaPredicted RBP13.17□□□□□ -0.3
USP48-212ENST00000527823 ROBO1Q9Y6N7 1651 aa13.17□□□□□ -0.3
USP48-212ENST00000527823 SLIT1O75093 1534 aa13.17□□□□□ -0.3
USP48-212ENST00000527823 ARHGAP23Q9P227 1491 aa13.16□□□□□ -0.3
USP48-212ENST00000527823 TTLL13PA6NNM8 815 aa13.16□□□□□ -0.3
USP48-212ENST00000527823 TIE1P35590 1138 aa13.16□□□□□ -0.3
USP48-212ENST00000527823 MAP3K1Q13233 1512 aa13.16□□□□□ -0.3
USP48-212ENST00000527823 SLC24A1O60721 1099 aa13.15□□□□□ -0.3
USP48-212ENST00000527823 THEMISQ8N1K5 641 aaPredicted RBP13.15□□□□□ -0.3
USP48-212ENST00000527823 EFCAB3Q8N7B9 438 aa13.15□□□□□ -0.3
USP48-212ENST00000527823 WASHC2CQ9Y4E1 1318 aa13.14□□□□□ -0.31
USP48-212ENST00000527823 PIK3C2BO00750 1634 aa13.14□□□□□ -0.31
USP48-212ENST00000527823 PRDM15P57071 1507 aaPredicted RBP13.13□□□□□ -0.31
USP48-212ENST00000527823 SP7Q8TDD2 431 aaPredicted RBP13.12□□□□□ -0.31
USP48-212ENST00000527823 CROCC2H7BZ55 1655 aa13.12□□□□□ -0.31
USP48-212ENST00000527823 NWD1Q149M9 1564 aa13.11□□□□□ -0.31
USP48-212ENST00000527823 GTPBP6O43824 516 aaPredicted RBP13.11□□□□□ -0.31
USP48-212ENST00000527823 KDM5AP29375 1690 aaKnown RBP13.11□□□□□ -0.31
USP48-212ENST00000527823 GOLGA2Q08379 1002 aa13.1□□□□□ -0.31
USP48-212ENST00000527823 HAP1P54257 671 aaPredicted RBP13.09□□□□□ -0.31
USP48-212ENST00000527823 PHLPP1O60346 1717 aa13.08□□□□□ -0.32
USP48-212ENST00000527823 FAM135BQ49AJ0 1406 aa13.08□□□□□ -0.32
USP48-212ENST00000527823 POTEAQ6S8J7 498 aa13.08□□□□□ -0.32
USP48-212ENST00000527823 ATN1P54259 1190 aaPredicted RBP13.07□□□□□ -0.32
USP48-212ENST00000527823 MFRPQ9BY79 579 aa13.07□□□□□ -0.32
USP48-212ENST00000527823 TRIM35Q9UPQ4 493 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms