RNA–Protein interactions for RNA: ENST00000526425.1

USP35-201, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 1 (best) BASIC

Gene USP35, Length 3,770 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-201ENST00000526425 TRAK1Q9UPV9 953 aa12.99□□□□□ -0.33
USP35-201ENST00000526425 KTN1Q86UP2 1357 aaKnown RBP12.98□□□□□ -0.33
USP35-201ENST00000526425 NEO1Q92859 1461 aa12.98□□□□□ -0.33
USP35-201ENST00000526425 ZFYVE16Q7Z3T8 1539 aa12.97□□□□□ -0.33
USP35-201ENST00000526425 PLXNC1O60486 1568 aa12.97□□□□□ -0.33
USP35-201ENST00000526425 CFAP70Q5T0N1 1121 aa12.96□□□□□ -0.33
USP35-201ENST00000526425 PPP4R2Q9NY27 417 aa12.96□□□□□ -0.33
USP35-201ENST00000526425 RIMBP3CA6NJZ7 1639 aa12.96□□□□□ -0.34
USP35-201ENST00000526425 RIMBP3BA6NNM3 1639 aa12.96□□□□□ -0.34
USP35-201ENST00000526425 RIMBP3Q9UFD9 1639 aa12.96□□□□□ -0.34
USP35-201ENST00000526425 KDM5DQ9BY66 1539 aa12.95□□□□□ -0.34
USP35-201ENST00000526425 TMEM132EQ6IEE7 984 aa12.94□□□□□ -0.34
USP35-201ENST00000526425 CCDC146Q8IYE0 955 aa12.94□□□□□ -0.34
USP35-201ENST00000526425 STAC3Q96MF2 364 aa12.94□□□□□ -0.34
USP35-201ENST00000526425 RALBP1Q15311 655 aa12.93□□□□□ -0.34
USP35-201ENST00000526425 ZBED9Q6R2W3 1325 aa12.93□□□□□ -0.34
USP35-201ENST00000526425 CFAP74Q9C0B2 1584 aa12.93□□□□□ -0.34
USP35-201ENST00000526425 PAXIP1Q6ZW49 1069 aaPredicted RBP12.93□□□□□ -0.34
USP35-201ENST00000526425 NLRP13Q86W25 1043 aa12.93□□□□□ -0.34
USP35-201ENST00000526425 MYBBP1AQ9BQG0 1328 aaKnown RBP12.93□□□□□ -0.34
USP35-201ENST00000526425 AAMPQ13685 434 aa12.92□□□□□ -0.34
USP35-201ENST00000526425 KLHL34Q8N239 644 aa12.92□□□□□ -0.34
USP35-201ENST00000526425 CANXP27824 592 aaKnown RBP12.92□□□□□ -0.34
USP35-201ENST00000526425 CDCA8Q53HL2 280 aa12.92□□□□□ -0.34
USP35-201ENST00000526425 MLH3Q9UHC1 1453 aa12.91□□□□□ -0.34
USP35-201ENST00000526425 NUDCQ9Y266 331 aa12.91□□□□□ -0.34
USP35-201ENST00000526425 ARID3AQ99856 593 aa12.91□□□□□ -0.34
USP35-201ENST00000526425 PLIN1O60240 522 aa12.9□□□□□ -0.34
USP35-201ENST00000526425 CDCA7LQ96GN5 454 aa12.89□□□□□ -0.35
USP35-201ENST00000526425 PLA2R1Q13018 1463 aa12.89□□□□□ -0.35
USP35-201ENST00000526425 YEATS2Q9ULM3 1422 aa12.89□□□□□ -0.35
USP35-201ENST00000526425 VGFO15240 615 aaPredicted RBP12.89□□□□□ -0.35
USP35-201ENST00000526425 HSP90AA1P07900 732 aaKnown RBP12.89□□□□□ -0.35
USP35-201ENST00000526425 PNISRQ8TF01 805 aaKnown RBP12.89□□□□□ -0.35
USP35-201ENST00000526425 PPM1GO15355 546 aaPredicted RBP12.88□□□□□ -0.35
USP35-201ENST00000526425 UNC13BO14795 1591 aa12.88□□□□□ -0.35
USP35-201ENST00000526425 PRAG1Q86YV5 1406 aa12.87□□□□□ -0.35
USP35-201ENST00000526425 EIF3AQ14152 1382 aaKnown RBP12.87□□□□□ -0.35
USP35-201ENST00000526425 RALGAPBQ86X10 1494 aa12.87□□□□□ -0.35
USP35-201ENST00000526425 SLC52A1Q9NWF4 448 aa12.87□□□□□ -0.35
USP35-201ENST00000526425 POGKQ9P215 609 aa12.86□□□□□ -0.35
USP35-201ENST00000526425 SRPK2P78362 688 aaKnown RBP12.86□□□□□ -0.35
USP35-201ENST00000526425 HECW2Q9P2P5 1572 aa12.86□□□□□ -0.35
USP35-201ENST00000526425 IQGAP3Q86VI3 1631 aa12.86□□□□□ -0.35
USP35-201ENST00000526425 UHRF1BP1Q6BDS2 1440 aa12.86□□□□□ -0.35
USP35-201ENST00000526425 RCAN3Q9UKA8 241 aa12.86□□□□□ -0.35
USP35-201ENST00000526425 INO80Q9ULG1 1556 aaPredicted RBP12.85□□□□□ -0.35
USP35-201ENST00000526425 ATP10AO60312 1499 aa12.85□□□□□ -0.35
USP35-201ENST00000526425 FBXO31Q5XUX0 539 aaPredicted RBP12.85□□□□□ -0.35
USP35-201ENST00000526425 DISP3Q9P2K9 1392 aa12.85□□□□□ -0.35
USP35-201ENST00000526425 IDI1Q13907 227 aa12.84□□□□□ -0.35
USP35-201ENST00000526425 TSPOAP1O95153 1857 aa12.84□□□□□ -0.35
USP35-201ENST00000526425 MORC1Q86VD1 984 aa12.84□□□□□ -0.35
USP35-201ENST00000526425 IPO9Q96P70 1041 aaKnown RBP12.84□□□□□ -0.35
USP35-201ENST00000526425 ADGRF5Q8IZF2 1346 aa12.84□□□□□ -0.35
USP35-201ENST00000526425 USP35Q9P2H5 1018 aa12.84□□□□□ -0.35
USP35-201ENST00000526425 RGS3P49796 1198 aa12.83□□□□□ -0.36
USP35-201ENST00000526425 ADAMTS8Q9UP79 889 aa12.83□□□□□ -0.36
USP35-201ENST00000526425 RRP7AQ9Y3A4 280 aaKnown RBP12.83□□□□□ -0.36
USP35-201ENST00000526425 MAGI2Q86UL8 1455 aa12.83□□□□□ -0.36
USP35-201ENST00000526425 CFAP65Q6ZU64 1925 aaKnown RBP12.82□□□□□ -0.36
USP35-201ENST00000526425 NPATQ14207 1427 aa12.82□□□□□ -0.36
USP35-201ENST00000526425 EXOC6Q8TAG9 804 aa12.82□□□□□ -0.36
USP35-201ENST00000526425 CHMP4BQ9H444 224 aaKnown RBP12.81□□□□□ -0.36
USP35-201ENST00000526425 U2SURPO15042 1029 aaKnown RBP12.81□□□□□ -0.36
USP35-201ENST00000526425 SPATA31E1Q6ZUB1 1445 aa12.81□□□□□ -0.36
USP35-201ENST00000526425 KIDINS220Q9ULH0 1771 aa12.8□□□□□ -0.36
USP35-201ENST00000526425 RPGRIP1LQ68CZ1 1315 aa12.8□□□□□ -0.36
USP35-201ENST00000526425 PTPRTO14522 1441 aa12.8□□□□□ -0.36
USP35-201ENST00000526425 NOS1P29475 1434 aa12.8□□□□□ -0.36
USP35-201ENST00000526425 HDGFP51858 240 aaKnown RBP12.8□□□□□ -0.36
USP35-201ENST00000526425 BBXQ8WY36 941 aaPredicted RBP12.79□□□□□ -0.36
USP35-201ENST00000526425 FRAT1Q92837 279 aaPredicted RBP12.79□□□□□ -0.36
USP35-201ENST00000526425 PPP6R1Q9UPN7 881 aa12.79□□□□□ -0.36
USP35-201ENST00000526425 MINK1Q8N4C8 1332 aaPredicted RBP12.79□□□□□ -0.36
USP35-201ENST00000526425 SLC12A5Q9H2X9 1139 aa12.79□□□□□ -0.36
USP35-201ENST00000526425 APAF1O14727 1248 aa12.79□□□□□ -0.36
USP35-201ENST00000526425 GSE1Q14687 1217 aa12.79□□□□□ -0.36
USP35-201ENST00000526425 TRPM2O94759 1503 aa12.79□□□□□ -0.36
USP35-201ENST00000526425 KDM5CP41229 1560 aa12.78□□□□□ -0.36
USP35-201ENST00000526425 NUTM2FA1L443 756 aa12.78□□□□□ -0.36
USP35-201ENST00000526425 TESK2Q96S53 571 aa12.78□□□□□ -0.36
USP35-201ENST00000526425 CENPJQ9HC77 1338 aaPredicted RBP12.78□□□□□ -0.36
USP35-201ENST00000526425 TET3O43151 1660 aa12.77□□□□□ -0.36
USP35-201ENST00000526425 DIP2BQ9P265 1576 aa12.77□□□□□ -0.36
USP35-201ENST00000526425 PRDM15P57071 1507 aaPredicted RBP12.77□□□□□ -0.36
USP35-201ENST00000526425 GLI2P10070 1586 aa12.77□□□□□ -0.36
USP35-201ENST00000526425 UGGT1Q9NYU2 1555 aa12.77□□□□□ -0.36
USP35-201ENST00000526425 SOX12O15370 315 aa12.77□□□□□ -0.37
USP35-201ENST00000526425 BRD4O60885 1362 aaPredicted RBP12.77□□□□□ -0.37
USP35-201ENST00000526425 CABP2Q9NPB3 220 aa12.77□□□□□ -0.37
USP35-201ENST00000526425 PPP2R1AP30153 589 aa12.76□□□□□ -0.37
USP35-201ENST00000526425 EIF2AK4Q9P2K8 1649 aaKnown RBP12.76□□□□□ -0.37
USP35-201ENST00000526425 EFCAB6Q5THR3 1501 aa12.76□□□□□ -0.37
USP35-201ENST00000526425 PLCD3Q8N3E9 789 aa12.75□□□□□ -0.37
USP35-201ENST00000526425 RRP1P56182 461 aaKnown RBP12.75□□□□□ -0.37
USP35-201ENST00000526425 E9PCH4 1651 aa12.74□□□□□ -0.37
USP35-201ENST00000526425 U2AF1L5P0DN76 240 aaPredicted RBP12.74□□□□□ -0.37
USP35-201ENST00000526425 U2AF1Q01081 240 aaKnown RBP eCLIP12.74□□□□□ -0.37
USP35-201ENST00000526425 PNNQ9H307 717 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms