RNA–Protein interactions for RNA: ENST00000526425.1

USP35-201, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 1 (best) BASIC

Gene USP35, Length 3,770 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-201ENST00000526425 NISCHQ9Y2I1 1504 aa20.22■□□□□ 0.83
USP35-201ENST00000526425 DCAF8L2P0C7V8 631 aa17.64■□□□□ 0.41
USP35-201ENST00000526425 SHROOM4Q9ULL8 1493 aa17.48■□□□□ 0.39
USP35-201ENST00000526425 CCDC180Q9P1Z9 1646 aa17.3■□□□□ 0.36
USP35-201ENST00000526425 SUPT5HO00267 1087 aaKnown RBP17.18■□□□□ 0.34
USP35-201ENST00000526425 ZCCHC6Q5VYS8 1495 aaKnown RBP16.94■□□□□ 0.3
USP35-201ENST00000526425 ABCC9O60706 1549 aa16.82■□□□□ 0.28
USP35-201ENST00000526425 PELP1Q8IZL8 1130 aaKnown RBP16.52■□□□□ 0.24
USP35-201ENST00000526425 DCAF1Q9Y4B6 1507 aa16.51■□□□□ 0.23
USP35-201ENST00000526425 SCRIBQ14160 1630 aa16.3■□□□□ 0.2
USP35-201ENST00000526425 NACADO15069 1562 aa16.29■□□□□ 0.2
USP35-201ENST00000526425 MYO15BQ96JP2 1530 aa16.23■□□□□ 0.19
USP35-201ENST00000526425 EHMT2Q96KQ7 1210 aa16.23■□□□□ 0.19
USP35-201ENST00000526425 RB1CC1Q8TDY2 1594 aa16.19■□□□□ 0.18
USP35-201ENST00000526425 MYT1Q01538 1121 aa16.08■□□□□ 0.17
USP35-201ENST00000526425 PABPN1Q86U42 306 aaKnown RBP eCLIP16.08■□□□□ 0.16
USP35-201ENST00000526425 CHIC1Q5VXU3 224 aa16.07■□□□□ 0.16
USP35-201ENST00000526425 FAM9AQ8IZU1 332 aaPredicted RBP16.04■□□□□ 0.16
USP35-201ENST00000526425 PPARGC1BQ86YN6 1023 aaKnown RBP15.92■□□□□ 0.14
USP35-201ENST00000526425 LOC105371045A0A1W2PR82 267 aa15.9■□□□□ 0.14
USP35-201ENST00000526425 RSF1Q96T23 1441 aaPredicted RBP15.84■□□□□ 0.13
USP35-201ENST00000526425 PCGF6Q9BYE7 350 aa15.83■□□□□ 0.13
USP35-201ENST00000526425 TRIM41Q8WV44 630 aa15.82■□□□□ 0.12
USP35-201ENST00000526425 CECR2Q9BXF3 1484 aa15.81■□□□□ 0.12
USP35-201ENST00000526425 HRCP23327 699 aa15.78■□□□□ 0.12
USP35-201ENST00000526425 MROH2BQ7Z745 1585 aa15.67■□□□□ 0.1
USP35-201ENST00000526425 BAZ1AQ9NRL2 1556 aaPredicted RBP15.64■□□□□ 0.1
USP35-201ENST00000526425 TTBK1Q5TCY1 1321 aaPredicted RBP15.6■□□□□ 0.09
USP35-201ENST00000526425 SCAF1Q9H7N4 1312 aaKnown RBP15.57■□□□□ 0.08
USP35-201ENST00000526425 UNC13AQ9UPW8 1703 aa15.5■□□□□ 0.07
USP35-201ENST00000526425 WIZO95785 1651 aa15.49■□□□□ 0.07
USP35-201ENST00000526425 BICRAQ9NZM4 1560 aa15.49■□□□□ 0.07
USP35-201ENST00000526425 SMARCA4P51532 1647 aa15.46■□□□□ 0.07
USP35-201ENST00000526425 RANGAP1P46060 587 aaPredicted RBP15.43■□□□□ 0.06
USP35-201ENST00000526425 BAZ1BQ9UIG0 1483 aaKnown RBP15.35■□□□□ 0.05
USP35-201ENST00000526425 PRKCSHP14314 528 aaPredicted RBP15.33■□□□□ 0.04
USP35-201ENST00000526425 TOP2AP11388 1531 aaKnown RBP15.32■□□□□ 0.04
USP35-201ENST00000526425 UBTFP17480 764 aaKnown RBP15.3■□□□□ 0.04
USP35-201ENST00000526425 ATAD2BQ9ULI0 1458 aa15.3■□□□□ 0.04
USP35-201ENST00000526425 BCL11AQ9H165 835 aa15.29■□□□□ 0.04
USP35-201ENST00000526425 CCDC88BA6NC98 1476 aa15.29■□□□□ 0.04
USP35-201ENST00000526425 SMARCA2P51531 1590 aa15.27■□□□□ 0.04
USP35-201ENST00000526425 TRIM26Q12899 539 aaPredicted RBP15.25■□□□□ 0.03
USP35-201ENST00000526425 EIF4G1Q04637 1599 aaKnown RBP15.19■□□□□ 0.02
USP35-201ENST00000526425 GTF3C3Q9Y5Q9 886 aa15.11■□□□□ 0.01
USP35-201ENST00000526425 NCAPD3P42695 1498 aa15.09■□□□□ 0.01
USP35-201ENST00000526425 PEG3Q9GZU2 1588 aa15.08■□□□□ 0
USP35-201ENST00000526425 ABCC8Q09428 1581 aa15.05■□□□□ 0
USP35-201ENST00000526425 WRNQ14191 1432 aaPredicted RBP eCLIP15.04■□□□□ -0
USP35-201ENST00000526425 CCER1Q8TC90 406 aaPredicted RBP15.02□□□□□ -0.01
USP35-201ENST00000526425 CENPBP07199 599 aaPredicted RBP15.02□□□□□ -0.01
USP35-201ENST00000526425 APLP2Q06481 763 aa15.01□□□□□ -0.01
USP35-201ENST00000526425 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.97□□□□□ -0.01
USP35-201ENST00000526425 HMGXB3Q12766 1538 aa14.97□□□□□ -0.01
USP35-201ENST00000526425 CSRNP3Q8WYN3 585 aa14.97□□□□□ -0.01
USP35-201ENST00000526425 CC2D2AQ9P2K1 1620 aa14.94□□□□□ -0.02
USP35-201ENST00000526425 NEUROD1Q13562 356 aa14.94□□□□□ -0.02
USP35-201ENST00000526425 ERICH6Q7L0X2 663 aa14.89□□□□□ -0.03
USP35-201ENST00000526425 ACIN1Q9UKV3 1341 aaKnown RBP14.89□□□□□ -0.03
USP35-201ENST00000526425 CADPSQ9ULU8 1353 aa14.88□□□□□ -0.03
USP35-201ENST00000526425 SOGA1O94964 1423 aa14.88□□□□□ -0.03
USP35-201ENST00000526425 HNRNPUL2Q1KMD3 747 aaKnown RBP14.87□□□□□ -0.03
USP35-201ENST00000526425 ATP1B4Q9UN42 357 aaPredicted RBP14.87□□□□□ -0.03
USP35-201ENST00000526425 EEA1Q15075 1411 aa14.83□□□□□ -0.04
USP35-201ENST00000526425 ZEB1P37275 1124 aaPredicted RBP14.83□□□□□ -0.04
USP35-201ENST00000526425 CFTRP13569 1480 aa14.8□□□□□ -0.04
USP35-201ENST00000526425 YTHDC1Q96MU7 727 aaKnown RBP14.79□□□□□ -0.04
USP35-201ENST00000526425 ITGAEP38570 1179 aa14.75□□□□□ -0.05
USP35-201ENST00000526425 DNAJC5BQ9UF47 199 aa14.74□□□□□ -0.05
USP35-201ENST00000526425 RUSC2Q8N2Y8 1516 aa14.74□□□□□ -0.05
USP35-201ENST00000526425 SYNJ1O43426 1573 aa14.73□□□□□ -0.05
USP35-201ENST00000526425 FANCD2Q9BXW9 1451 aa14.7□□□□□ -0.06
USP35-201ENST00000526425 KIF27Q86VH2 1401 aa14.7□□□□□ -0.06
USP35-201ENST00000526425 CEP162Q5TB80 1403 aa14.69□□□□□ -0.06
USP35-201ENST00000526425 GOLGA3Q08378 1498 aa14.69□□□□□ -0.06
USP35-201ENST00000526425 NESP48681 1621 aa14.67□□□□□ -0.06
USP35-201ENST00000526425 PDS5BQ9NTI5 1447 aa14.67□□□□□ -0.06
USP35-201ENST00000526425 CEP164Q9UPV0 1460 aa14.66□□□□□ -0.06
USP35-201ENST00000526425 TNIKQ9UKE5 1360 aa14.65□□□□□ -0.06
USP35-201ENST00000526425 P3H3Q8IVL6 736 aa14.64□□□□□ -0.07
USP35-201ENST00000526425 CUX2O14529 1486 aa14.63□□□□□ -0.07
USP35-201ENST00000526425 TOP2BQ02880 1626 aa14.62□□□□□ -0.07
USP35-201ENST00000526425 CUX1P39880 1505 aa14.62□□□□□ -0.07
USP35-201ENST00000526425 CLIP1P30622 1438 aa14.56□□□□□ -0.08
USP35-201ENST00000526425 FGD5Q6ZNL6 1462 aa14.56□□□□□ -0.08
USP35-201ENST00000526425 ANP32EQ9BTT0 268 aa14.56□□□□□ -0.08
USP35-201ENST00000526425 RAPGEF2Q9Y4G8 1499 aa14.54□□□□□ -0.08
USP35-201ENST00000526425 ERCC6Q03468 1493 aa14.53□□□□□ -0.08
USP35-201ENST00000526425 LAMC3Q9Y6N6 1575 aa14.51□□□□□ -0.09
USP35-201ENST00000526425 CARMIL1Q5VZK9 1371 aa14.51□□□□□ -0.09
USP35-201ENST00000526425 TDRD9Q8NDG6 1382 aaKnown RBP14.49□□□□□ -0.09
USP35-201ENST00000526425 RAD54L2Q9Y4B4 1467 aa14.49□□□□□ -0.09
USP35-201ENST00000526425 BIVM-ERCC5R4GMW8 1640 aa14.48□□□□□ -0.09
USP35-201ENST00000526425 TOPBP1Q92547 1522 aa14.47□□□□□ -0.09
USP35-201ENST00000526425 IGF1RP08069 1367 aa14.45□□□□□ -0.1
USP35-201ENST00000526425 POLA1P09884 1462 aaPredicted RBP14.43□□□□□ -0.1
USP35-201ENST00000526425 DNMBPQ6XZF7 1577 aa14.43□□□□□ -0.1
USP35-201ENST00000526425 FAM50AQ14320 339 aaKnown RBP14.43□□□□□ -0.1
USP35-201ENST00000526425 ARID3CA6NKF2 412 aa14.43□□□□□ -0.1
USP35-201ENST00000526425 FBLN2P98095 1184 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms