RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 HSP90AA1P07900 732 aaKnown RBP10.94□□□□□ -0.66
CSMD1-213ENST00000523488 PLEKHG5O94827 1062 aa10.93□□□□□ -0.66
CSMD1-213ENST00000523488 TUBGCP6Q96RT7 1819 aa10.93□□□□□ -0.66
CSMD1-213ENST00000523488 SLC4A3P48751 1232 aa10.92□□□□□ -0.66
CSMD1-213ENST00000523488 KANK1Q14678 1352 aa10.92□□□□□ -0.66
CSMD1-213ENST00000523488 ANKRD30AQ9BXX3 1397 aa10.92□□□□□ -0.66
CSMD1-213ENST00000523488 PLA2R1Q13018 1463 aa10.91□□□□□ -0.66
CSMD1-213ENST00000523488 GPATCH8Q9UKJ3 1502 aaKnown RBP10.91□□□□□ -0.66
CSMD1-213ENST00000523488 CDC42BPBQ9Y5S2 1711 aa10.91□□□□□ -0.66
CSMD1-213ENST00000523488 NCBP3Q53F19 620 aaKnown RBP10.91□□□□□ -0.66
CSMD1-213ENST00000523488 POLR3GLQ9BT43 218 aa10.91□□□□□ -0.66
CSMD1-213ENST00000523488 TTC37Q6PGP7 1564 aa10.91□□□□□ -0.66
CSMD1-213ENST00000523488 CLEC17AQ6ZS10 378 aa10.9□□□□□ -0.66
CSMD1-213ENST00000523488 ZNF692Q9BU19 519 aaPredicted RBP10.9□□□□□ -0.66
CSMD1-213ENST00000523488 PNNQ9H307 717 aaKnown RBP10.9□□□□□ -0.66
CSMD1-213ENST00000523488 AAMPQ13685 434 aa10.89□□□□□ -0.67
CSMD1-213ENST00000523488 KDM5AP29375 1690 aaKnown RBP10.89□□□□□ -0.67
CSMD1-213ENST00000523488 TPM2P07951 284 aa10.89□□□□□ -0.67
CSMD1-213ENST00000523488 FRAT2O75474 233 aaPredicted RBP10.89□□□□□ -0.67
CSMD1-213ENST00000523488 ARXQ96QS3 562 aa10.89□□□□□ -0.67
CSMD1-213ENST00000523488 NLRP13Q86W25 1043 aa10.88□□□□□ -0.67
CSMD1-213ENST00000523488 CFAP74Q9C0B2 1584 aa10.88□□□□□ -0.67
CSMD1-213ENST00000523488 PDCL3Q9H2J4 239 aa10.87□□□□□ -0.67
CSMD1-213ENST00000523488 XRCC6P12956 609 aaKnown RBP eCLIP10.87□□□□□ -0.67
CSMD1-213ENST00000523488 A2MP01023 1474 aa10.87□□□□□ -0.67
CSMD1-213ENST00000523488 NKTRP30414 1462 aaKnown RBP10.87□□□□□ -0.67
CSMD1-213ENST00000523488 ANKRD26Q9UPS8 1709 aa10.86□□□□□ -0.67
CSMD1-213ENST00000523488 TROQ12816 1431 aaPredicted RBP10.86□□□□□ -0.67
CSMD1-213ENST00000523488 ADGRL1O94910 1474 aa10.86□□□□□ -0.67
CSMD1-213ENST00000523488 DUSP27Q5VZP5 1158 aa10.85□□□□□ -0.67
CSMD1-213ENST00000523488 PPP1R9BQ96SB3 815 aa10.85□□□□□ -0.67
CSMD1-213ENST00000523488 PLEKHH1Q9ULM0 1364 aa10.85□□□□□ -0.67
CSMD1-213ENST00000523488 ASXL1Q8IXJ9 1541 aa10.85□□□□□ -0.67
CSMD1-213ENST00000523488 VWDEQ8N2E2 1590 aa10.85□□□□□ -0.67
CSMD1-213ENST00000523488 SLC24A1O60721 1099 aa10.84□□□□□ -0.67
CSMD1-213ENST00000523488 FBLN2P98095 1184 aa10.83□□□□□ -0.68
CSMD1-213ENST00000523488 SAMD9LQ8IVG5 1584 aa10.83□□□□□ -0.68
CSMD1-213ENST00000523488 NGEFQ8N5V2 710 aa10.83□□□□□ -0.68
CSMD1-213ENST00000523488 CRBNQ96SW2 442 aa10.83□□□□□ -0.68
CSMD1-213ENST00000523488 UTP14CQ5TAP6 766 aaKnown RBP10.82□□□□□ -0.68
CSMD1-213ENST00000523488 SCAF11Q99590 1463 aaKnown RBP10.82□□□□□ -0.68
CSMD1-213ENST00000523488 ERBB4Q15303 1308 aa10.82□□□□□ -0.68
CSMD1-213ENST00000523488 A0A0U1RQG5 324 aaPredicted RBP10.82□□□□□ -0.68
CSMD1-213ENST00000523488 TMC1Q8TDI8 760 aa10.82□□□□□ -0.68
CSMD1-213ENST00000523488 TBC1D32Q96NH3 1257 aa10.82□□□□□ -0.68
CSMD1-213ENST00000523488 HS1BP3Q53T59 392 aa10.82□□□□□ -0.68
CSMD1-213ENST00000523488 POGKQ9P215 609 aa10.82□□□□□ -0.68
CSMD1-213ENST00000523488 PHF23Q9BUL5 403 aaPredicted RBP10.8□□□□□ -0.68
CSMD1-213ENST00000523488 MAPK8IP3Q9UPT6 1336 aa10.8□□□□□ -0.68
CSMD1-213ENST00000523488 TESK2Q96S53 571 aa10.8□□□□□ -0.68
CSMD1-213ENST00000523488 TRPM2O94759 1503 aa10.8□□□□□ -0.68
CSMD1-213ENST00000523488 MRE11P49959 708 aa10.8□□□□□ -0.68
CSMD1-213ENST00000523488 NRXN1Q9ULB1 1477 aa10.79□□□□□ -0.68
CSMD1-213ENST00000523488 CGNL1Q0VF96 1302 aa10.79□□□□□ -0.68
CSMD1-213ENST00000523488 SETBP1Q9Y6X0 1596 aa10.79□□□□□ -0.68
CSMD1-213ENST00000523488 SMAP1Q8IYB5 467 aaPredicted RBP10.79□□□□□ -0.68
CSMD1-213ENST00000523488 PLB1Q6P1J6 1458 aa10.78□□□□□ -0.68
CSMD1-213ENST00000523488 CDC42BPGQ6DT37 1551 aa10.78□□□□□ -0.68
CSMD1-213ENST00000523488 ERBINQ96RT1 1412 aa10.78□□□□□ -0.68
CSMD1-213ENST00000523488 N4BP2Q86UW6 1770 aaPredicted RBP10.78□□□□□ -0.68
CSMD1-213ENST00000523488 MAP7D2Q96T17 732 aa10.78□□□□□ -0.68
CSMD1-213ENST00000523488 SLFN5Q08AF3 891 aa10.76□□□□□ -0.69
CSMD1-213ENST00000523488 ANKRD50Q9ULJ7 1429 aa10.76□□□□□ -0.69
CSMD1-213ENST00000523488 PDE3AQ14432 1141 aa10.76□□□□□ -0.69
CSMD1-213ENST00000523488 OFD1O75665 1012 aa10.75□□□□□ -0.69
CSMD1-213ENST00000523488 C20orf194Q5TEA3 1177 aa10.75□□□□□ -0.69
CSMD1-213ENST00000523488 ZNF500O60304 480 aaPredicted RBP10.75□□□□□ -0.69
CSMD1-213ENST00000523488 MCM4P33991 863 aa10.75□□□□□ -0.69
CSMD1-213ENST00000523488 RIPK4P57078 832 aa10.75□□□□□ -0.69
CSMD1-213ENST00000523488 DISP3Q9P2K9 1392 aa10.75□□□□□ -0.69
CSMD1-213ENST00000523488 PDLIM2Q96JY6 352 aa10.74□□□□□ -0.69
CSMD1-213ENST00000523488 SNX21Q969T3 373 aa10.74□□□□□ -0.69
CSMD1-213ENST00000523488 ADGRB1O14514 1584 aa10.74□□□□□ -0.69
CSMD1-213ENST00000523488 MED14O60244 1454 aa10.74□□□□□ -0.69
CSMD1-213ENST00000523488 ABCA9Q8IUA7 1624 aa10.74□□□□□ -0.69
CSMD1-213ENST00000523488 TET3O43151 1660 aa10.74□□□□□ -0.69
CSMD1-213ENST00000523488 MYOM2P54296 1465 aa10.73□□□□□ -0.69
CSMD1-213ENST00000523488 GOLGA6L3A6NEY3 463 aa10.73□□□□□ -0.69
CSMD1-213ENST00000523488 ESPNB1AK53 854 aa10.73□□□□□ -0.69
CSMD1-213ENST00000523488 KLHL34Q8N239 644 aa10.73□□□□□ -0.69
CSMD1-213ENST00000523488 SKAP1Q86WV1 359 aa10.73□□□□□ -0.69
CSMD1-213ENST00000523488 CDCA7LQ96GN5 454 aa10.73□□□□□ -0.69
CSMD1-213ENST00000523488 HSP90AB1P08238 724 aaKnown RBP10.72□□□□□ -0.69
CSMD1-213ENST00000523488 BECN1Q14457 450 aa10.72□□□□□ -0.69
CSMD1-213ENST00000523488 MAP3K4Q9Y6R4 1608 aa10.72□□□□□ -0.69
CSMD1-213ENST00000523488 C9orf84Q5VXU9 1444 aa10.72□□□□□ -0.69
CSMD1-213ENST00000523488 CIZ1Q9ULV3 898 aaPredicted RBP10.72□□□□□ -0.69
CSMD1-213ENST00000523488 IFT140Q96RY7 1462 aa10.72□□□□□ -0.69
CSMD1-213ENST00000523488 RGS3P49796 1198 aa10.71□□□□□ -0.69
CSMD1-213ENST00000523488 TRIM44Q96DX7 344 aaPredicted RBP10.71□□□□□ -0.69
CSMD1-213ENST00000523488 PTPRTO14522 1441 aa10.71□□□□□ -0.69
CSMD1-213ENST00000523488 SLKQ9H2G2 1235 aaPredicted RBP10.71□□□□□ -0.69
CSMD1-213ENST00000523488 CLTCQ00610 1675 aaKnown RBP10.71□□□□□ -0.7
CSMD1-213ENST00000523488 MTERF4Q7Z6M4 381 aaKnown RBP10.71□□□□□ -0.7
CSMD1-213ENST00000523488 TBC1D2Q9BYX2 928 aa10.71□□□□□ -0.7
CSMD1-213ENST00000523488 PTMSP20962 102 aa10.7□□□□□ -0.7
CSMD1-213ENST00000523488 SMC5Q8IY18 1101 aa10.7□□□□□ -0.7
CSMD1-213ENST00000523488 SBNO2Q9Y2G9 1366 aa10.7□□□□□ -0.7
CSMD1-213ENST00000523488 GTF2F1P35269 517 aaKnown RBP eCLIP10.7□□□□□ -0.7
CSMD1-213ENST00000523488 RBM10P98175 930 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms