RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 DSTQ03001 7570 aaKnown RBP2.84□□□□□ -1.96
CSMD1-213ENST00000523488 KRTAP12-4P60329 112 aa2.82□□□□□ -1.96
CSMD1-213ENST00000523488 KRTAP4-7Q9BYR0 210 aa2.82□□□□□ -1.96
CSMD1-213ENST00000523488 SYNE1Q8NF91 8797 aaKnown RBP2.8□□□□□ -1.96
CSMD1-213ENST00000523488 MT1LQ93083 61 aa2.77□□□□□ -1.97
CSMD1-213ENST00000523488 FCGBPQ9Y6R7 5405 aaPredicted RBP2.74□□□□□ -1.97
CSMD1-213ENST00000523488 MT1AP04731 61 aa2.7□□□□□ -1.98
CSMD1-213ENST00000523488 SPRR2FQ96RM1 72 aa2.69□□□□□ -1.98
CSMD1-213ENST00000523488 KRTAP2-2Q9BYT5 123 aa2.63□□□□□ -1.99
CSMD1-213ENST00000523488 MUC12Q9UKN1 5478 aa2.62□□□□□ -1.99
CSMD1-213ENST00000523488 SSPOA2VEC9 5147 aa2.61□□□□□ -1.99
CSMD1-213ENST00000523488 LOC100996750A0A140TA64 210 aa2.6□□□□□ -1.99
CSMD1-213ENST00000523488 MT1GP13640 62 aa2.6□□□□□ -1.99
CSMD1-213ENST00000523488 SYNE2Q8WXH0 6885 aaKnown RBP2.59□□□□□ -1.99
CSMD1-213ENST00000523488 KRTAP5-5Q701N2 237 aaPredicted RBP2.59□□□□□ -2
CSMD1-213ENST00000523488 KRTAP4-3Q9BYR4 195 aa2.56□□□□□ -2
CSMD1-213ENST00000523488 KRTAP9-2Q9BYQ4 174 aa2.54□□□□□ -2
CSMD1-213ENST00000523488 LCE3BQ5TA77 95 aa2.53□□□□□ -2
CSMD1-213ENST00000523488 KRTAP4-6Q9BYQ5 205 aa2.53□□□□□ -2
CSMD1-213ENST00000523488 PRM1P04553 51 aa2.53□□□□□ -2.01
CSMD1-213ENST00000523488 KRTAP6-3Q3LI67 103 aa2.52□□□□□ -2.01
CSMD1-213ENST00000523488 KRTAP9-6A0A140TA67 174 aa2.52□□□□□ -2.01
CSMD1-213ENST00000523488 KRTAP4-9Q9BYQ8 210 aa2.5□□□□□ -2.01
CSMD1-213ENST00000523488 MT1MQ8N339 61 aa2.48□□□□□ -2.01
CSMD1-213ENST00000523488 LCE3DQ9BYE3 92 aa2.48□□□□□ -2.01
CSMD1-213ENST00000523488 LCE3EQ5T5B0 92 aa2.47□□□□□ -2.01
CSMD1-213ENST00000523488 MACF1Q9UPN3 7388 aaKnown RBP2.47□□□□□ -2.01
CSMD1-213ENST00000523488 KRTAP9-7A8MTY7 169 aa2.46□□□□□ -2.02
CSMD1-213ENST00000523488 SPRR2EP22531 72 aa2.45□□□□□ -2.02
CSMD1-213ENST00000523488 SPRR2BP35325 72 aa2.45□□□□□ -2.02
CSMD1-213ENST00000523488 SPRR2AP35326 72 aa2.45□□□□□ -2.02
CSMD1-213ENST00000523488 KRTAP19-6Q3LI70 58 aa2.42□□□□□ -2.02
CSMD1-213ENST00000523488 KRTAP19-3Q7Z4W3 81 aa2.42□□□□□ -2.02
CSMD1-213ENST00000523488 LCE5AQ5TCM9 118 aa2.4□□□□□ -2.03
CSMD1-213ENST00000523488 LCE1AQ5T7P2 110 aa2.37□□□□□ -2.03
CSMD1-213ENST00000523488 MDN1Q9NU22 5596 aa2.33□□□□□ -2.04
CSMD1-213ENST00000523488 SPRR2DP22532 72 aa2.33□□□□□ -2.04
CSMD1-213ENST00000523488 KRTAP6-2Q3LI66 62 aa2.3□□□□□ -2.04
CSMD1-213ENST00000523488 KRTAP6-1Q3LI64 71 aa2.28□□□□□ -2.05
CSMD1-213ENST00000523488 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.27□□□□□ -2.05
CSMD1-213ENST00000523488 KRTAP4-12Q9BQ66 201 aa2.26□□□□□ -2.05
CSMD1-213ENST00000523488 LCE1EQ5T753 118 aa2.22□□□□□ -2.05
CSMD1-213ENST00000523488 MT4P47944 62 aa2.2□□□□□ -2.06
CSMD1-213ENST00000523488 KRTAP9-4Q9BYQ2 154 aa2.19□□□□□ -2.06
CSMD1-213ENST00000523488 KRTAP9-9Q9BYP9 154 aa2.17□□□□□ -2.06
CSMD1-213ENST00000523488 LCE1DQ5T752 114 aa2.11□□□□□ -2.07
CSMD1-213ENST00000523488 LCE1FQ5T754 118 aa2.07□□□□□ -2.08
CSMD1-213ENST00000523488 LCE4AQ5TA78 99 aa2.07□□□□□ -2.08
CSMD1-213ENST00000523488 KRTAP5-9P26371 169 aa2.06□□□□□ -2.08
CSMD1-213ENST00000523488 MT3P25713 68 aa2.05□□□□□ -2.08
CSMD1-213ENST00000523488 MUC19Q7Z5P9 8384 aa2.01□□□□□ -2.09
CSMD1-213ENST00000523488 LCE1BQ5T7P3 118 aa1.98□□□□□ -2.09
CSMD1-213ENST00000523488 KRTAP4-2Q9BYR5 136 aa1.97□□□□□ -2.09
CSMD1-213ENST00000523488 KRTAP5-4Q6L8H1 288 aa1.96□□□□□ -2.1
CSMD1-213ENST00000523488 KRTAP5-2Q701N4 177 aa1.94□□□□□ -2.1
CSMD1-213ENST00000523488 KRTAP4-11Q9BYQ6 195 aa1.94□□□□□ -2.1
CSMD1-213ENST00000523488 NEBP20929 6669 aa1.94□□□□□ -2.1
CSMD1-213ENST00000523488 KRTAP5-1Q6L8H4 278 aa1.94□□□□□ -2.1
CSMD1-213ENST00000523488 KRTAP20-1Q3LI63 56 aa1.86□□□□□ -2.11
CSMD1-213ENST00000523488 KRTAP5-10Q6L8G5 202 aa1.85□□□□□ -2.11
CSMD1-213ENST00000523488 MUC5ACP98088 5654 aa1.81□□□□□ -2.12
CSMD1-213ENST00000523488 KRTAP21-1Q3LI58 79 aa1.8□□□□□ -2.12
CSMD1-213ENST00000523488 HMCN1Q96RW7 5635 aa1.75□□□□□ -2.13
CSMD1-213ENST00000523488 KRTAP20-2Q3LI61 65 aa1.75□□□□□ -2.13
CSMD1-213ENST00000523488 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.75□□□□□ -2.13
CSMD1-213ENST00000523488 GPR98Q8WXG9 6306 aa1.74□□□□□ -2.13
CSMD1-213ENST00000523488 KRTAP5-3Q6L8H2 238 aa1.72□□□□□ -2.13
CSMD1-213ENST00000523488 LCE1CQ5T751 118 aa1.65□□□□□ -2.15
CSMD1-213ENST00000523488 KRTAP21-2Q3LI59 83 aa1.6□□□□□ -2.15
CSMD1-213ENST00000523488 KRTAP4-4Q9BYR3 166 aa1.6□□□□□ -2.15
CSMD1-213ENST00000523488 KRTAP5-7Q6L8G8 165 aa1.55□□□□□ -2.16
CSMD1-213ENST00000523488 AHNAK2Q8IVF2 5795 aa1.52□□□□□ -2.17
CSMD1-213ENST00000523488 MUC5BQ9HC84 5762 aaPredicted RBP1.51□□□□□ -2.17
CSMD1-213ENST00000523488 KRTAP5-8O75690 187 aa1.48□□□□□ -2.17
CSMD1-213ENST00000523488 AHNAKQ09666 5890 aaKnown RBP1.44□□□□□ -2.18
CSMD1-213ENST00000523488 KRTAP5-11Q6L8G4 156 aa1.4□□□□□ -2.19
CSMD1-213ENST00000523488 PHGR1C9JFL3 82 aa1.18□□□□□ -2.22
CSMD1-213ENST00000523488 MUC16Q8WXI7 14507 aa0.98□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 62.4 ms