RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TXNDC2Q86VQ3 553 aa21.68■■□□□ 1.06
NUP54-213ENST00000513352 NCKAP5LQ9HCH0 1330 aa21.68■■□□□ 1.06
NUP54-213ENST00000513352 ARHGAP23Q9P227 1491 aa21.68■■□□□ 1.06
NUP54-213ENST00000513352 SCAF11Q99590 1463 aaKnown RBP21.67■■□□□ 1.06
NUP54-213ENST00000513352 CLSPNQ9HAW4 1339 aa21.67■■□□□ 1.06
NUP54-213ENST00000513352 HDGFP51858 240 aaKnown RBP21.67■■□□□ 1.06
NUP54-213ENST00000513352 SENP3Q9H4L4 574 aaPredicted RBP21.67■■□□□ 1.06
NUP54-213ENST00000513352 NEURL4Q96JN8 1562 aa21.66■■□□□ 1.06
NUP54-213ENST00000513352 NEXMIFQ5QGS0 1516 aa21.66■■□□□ 1.06
NUP54-213ENST00000513352 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.66■■□□□ 1.06
NUP54-213ENST00000513352 PPLO60437 1756 aa21.66■■□□□ 1.06
NUP54-213ENST00000513352 ZFYVE9O95405 1425 aa21.65■■□□□ 1.06
NUP54-213ENST00000513352 RPGRIP1LQ68CZ1 1315 aa21.64■■□□□ 1.05
NUP54-213ENST00000513352 LTKP29376 864 aa21.64■■□□□ 1.05
NUP54-213ENST00000513352 BCANQ96GW7 911 aa21.64■■□□□ 1.05
NUP54-213ENST00000513352 STRCQ7RTU9 1775 aa21.64■■□□□ 1.05
NUP54-213ENST00000513352 IFT172Q9UG01 1749 aa21.63■■□□□ 1.05
NUP54-213ENST00000513352 TONSLQ96HA7 1378 aa21.62■■□□□ 1.05
NUP54-213ENST00000513352 DCAF11Q8TEB1 546 aa21.61■■□□□ 1.05
NUP54-213ENST00000513352 KDM2AQ9Y2K7 1162 aa21.61■■□□□ 1.05
NUP54-213ENST00000513352 NPHP4O75161 1426 aaPredicted RBP21.6■■□□□ 1.05
NUP54-213ENST00000513352 VGFO15240 615 aaPredicted RBP21.59■■□□□ 1.05
NUP54-213ENST00000513352 IQGAP1P46940 1657 aa21.59■■□□□ 1.05
NUP54-213ENST00000513352 PLEKHG1Q9ULL1 1385 aa21.57■■□□□ 1.04
NUP54-213ENST00000513352 L3MBTL2Q969R5 705 aa21.56■■□□□ 1.04
NUP54-213ENST00000513352 ADGRF5Q8IZF2 1346 aa21.55■■□□□ 1.04
NUP54-213ENST00000513352 MED14O60244 1454 aa21.55■■□□□ 1.04
NUP54-213ENST00000513352 MYOM2P54296 1465 aa21.55■■□□□ 1.04
NUP54-213ENST00000513352 DMRT2Q9Y5R5 561 aa21.53■■□□□ 1.04
NUP54-213ENST00000513352 SLC26A8Q96RN1 970 aa21.51■■□□□ 1.03
NUP54-213ENST00000513352 SETBP1Q9Y6X0 1596 aa21.5■■□□□ 1.03
NUP54-213ENST00000513352 STAC3Q96MF2 364 aa21.49■■□□□ 1.03
NUP54-213ENST00000513352 NRXN3Q9Y4C0 1643 aa21.48■■□□□ 1.03
NUP54-213ENST00000513352 PIK3C2GO75747 1445 aa21.47■■□□□ 1.03
NUP54-213ENST00000513352 DIP2AQ14689 1571 aa21.47■■□□□ 1.03
NUP54-213ENST00000513352 NRXN1Q9ULB1 1477 aa21.46■■□□□ 1.03
NUP54-213ENST00000513352 ALKQ9UM73 1620 aa21.46■■□□□ 1.03
NUP54-213ENST00000513352 ADAMTS13Q76LX8 1427 aa21.46■■□□□ 1.03
NUP54-213ENST00000513352 LAMC1P11047 1609 aa21.44■■□□□ 1.02
NUP54-213ENST00000513352 PRAG1Q86YV5 1406 aa21.44■■□□□ 1.02
NUP54-213ENST00000513352 TIMELESSQ9UNS1 1208 aa21.43■■□□□ 1.02
NUP54-213ENST00000513352 CFAP70Q5T0N1 1121 aa21.42■■□□□ 1.02
NUP54-213ENST00000513352 TBX22Q9Y458 520 aa21.42■■□□□ 1.02
NUP54-213ENST00000513352 SETD1AO15047 1707 aaKnown RBP21.41■■□□□ 1.02
NUP54-213ENST00000513352 C14orf93Q9H972 538 aaKnown RBP21.39■■□□□ 1.01
NUP54-213ENST00000513352 METP08581 1390 aa21.38■■□□□ 1.01
NUP54-213ENST00000513352 ZNF335Q9H4Z2 1342 aaPredicted RBP21.38■■□□□ 1.01
NUP54-213ENST00000513352 KIAA1210Q9ULL0 1709 aa21.38■■□□□ 1.01
NUP54-213ENST00000513352 NBPF8Q3BBV2 869 aa21.37■■□□□ 1.01
NUP54-213ENST00000513352 TMEM132EQ6IEE7 984 aa21.37■■□□□ 1.01
NUP54-213ENST00000513352 TRPM1Q7Z4N2 1603 aa21.37■■□□□ 1.01
NUP54-213ENST00000513352 CHD2O14647 1828 aaKnown RBP21.36■■□□□ 1.01
NUP54-213ENST00000513352 STK26Q9P289 416 aa21.35■■□□□ 1.01
NUP54-213ENST00000513352 PIK3R4Q99570 1358 aa21.35■■□□□ 1.01
NUP54-213ENST00000513352 ASXL1Q8IXJ9 1541 aa21.34■■□□□ 1.01
NUP54-213ENST00000513352 PTPRUQ92729 1446 aa21.33■■□□□ 1.01
NUP54-213ENST00000513352 ROCK2O75116 1388 aaKnown RBP21.33■■□□□ 1
NUP54-213ENST00000513352 STRCP1A6NGW2 1772 aa21.33■■□□□ 1
NUP54-213ENST00000513352 KCNA6P17658 529 aa21.32■■□□□ 1
NUP54-213ENST00000513352 NBPF1Q3BBV0 1214 aa21.32■■□□□ 1
NUP54-213ENST00000513352 AMOTL2Q9Y2J4 779 aa21.32■■□□□ 1
NUP54-213ENST00000513352 NWD1Q149M9 1564 aa21.31■■□□□ 1
NUP54-213ENST00000513352 YTHDC2Q9H6S0 1430 aaKnown RBP21.3■■□□□ 1
NUP54-213ENST00000513352 XRN1Q8IZH2 1706 aaKnown RBP21.3■■□□□ 1
NUP54-213ENST00000513352 RALGAPBQ86X10 1494 aa21.3■■□□□ 1
NUP54-213ENST00000513352 ADGRB1O14514 1584 aa21.3■■□□□ 1
NUP54-213ENST00000513352 LRPPRCP42704 1394 aaKnown RBP21.28■■□□□ 1
NUP54-213ENST00000513352 TRAK1Q9UPV9 953 aa21.27■■□□□ 1
NUP54-213ENST00000513352 KNDC1Q76NI1 1749 aa21.26■□□□□ 0.99
NUP54-213ENST00000513352 NKTRP30414 1462 aaKnown RBP21.26■□□□□ 0.99
NUP54-213ENST00000513352 CPS1P31327 1500 aa21.26■□□□□ 0.99
NUP54-213ENST00000513352 PROSER2Q86WR7 435 aaPredicted RBP21.26■□□□□ 0.99
NUP54-213ENST00000513352 CARD11Q9BXL7 1154 aa21.26■□□□□ 0.99
NUP54-213ENST00000513352 LTBP4Q8N2S1 1624 aa21.24■□□□□ 0.99
NUP54-213ENST00000513352 RBM33Q96EV2 1170 aaKnown RBP21.23■□□□□ 0.99
NUP54-213ENST00000513352 ABCC11Q96J66 1382 aa21.23■□□□□ 0.99
NUP54-213ENST00000513352 ROBO2Q9HCK4 1378 aa21.23■□□□□ 0.99
NUP54-213ENST00000513352 PTCH1Q13635 1447 aa21.22■□□□□ 0.99
NUP54-213ENST00000513352 C14orf37Q86TY3 774 aa21.22■□□□□ 0.99
NUP54-213ENST00000513352 ZEB1P37275 1124 aaPredicted RBP21.21■□□□□ 0.99
NUP54-213ENST00000513352 POGKQ9P215 609 aa21.21■□□□□ 0.99
NUP54-213ENST00000513352 GPRASP1Q5JY77 1395 aa21.21■□□□□ 0.99
NUP54-213ENST00000513352 ARHGEF28Q8N1W1 1705 aaKnown RBP21.21■□□□□ 0.99
NUP54-213ENST00000513352 TECPR2O15040 1411 aa21.21■□□□□ 0.99
NUP54-213ENST00000513352 LRRC7Q96NW7 1537 aa21.2■□□□□ 0.98
NUP54-213ENST00000513352 SAFB2Q14151 953 aaKnown RBP eCLIP21.2■□□□□ 0.98
NUP54-213ENST00000513352 DLC1Q96QB1 1528 aa21.19■□□□□ 0.98
NUP54-213ENST00000513352 WAPLQ7Z5K2 1190 aa21.19■□□□□ 0.98
NUP54-213ENST00000513352 PRAM1Q96QH2 718 aa21.19■□□□□ 0.98
NUP54-213ENST00000513352 TMEM94Q12767 1356 aa21.19■□□□□ 0.98
NUP54-213ENST00000513352 EIF3AQ14152 1382 aaKnown RBP21.18■□□□□ 0.98
NUP54-213ENST00000513352 XIRP1Q702N8 1843 aaKnown RBP21.16■□□□□ 0.98
NUP54-213ENST00000513352 FAM135BQ49AJ0 1406 aa21.16■□□□□ 0.98
NUP54-213ENST00000513352 PLEKHH1Q9ULM0 1364 aa21.16■□□□□ 0.98
NUP54-213ENST00000513352 PHF23Q9BUL5 403 aaPredicted RBP21.16■□□□□ 0.98
NUP54-213ENST00000513352 NALCNQ8IZF0 1738 aa21.13■□□□□ 0.97
NUP54-213ENST00000513352 QRICH2Q9H0J4 1663 aa21.13■□□□□ 0.97
NUP54-213ENST00000513352 SIRT1Q96EB6 747 aa21.13■□□□□ 0.97
NUP54-213ENST00000513352 USP47Q96K76 1375 aa21.12■□□□□ 0.97
NUP54-213ENST00000513352 CENPJQ9HC77 1338 aaPredicted RBP21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms