RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	SHANK2	Q9UPX8	1470 aa		13.79	□□□□□ -0.2
USP4-213	ENST00000488520	CPS1	P31327	1500 aa		13.79	□□□□□ -0.2
USP4-213	ENST00000488520	IQGAP1	P46940	1657 aa		13.79	□□□□□ -0.2
USP4-213	ENST00000488520	PZP	P20742	1482 aa		13.78	□□□□□ -0.2
USP4-213	ENST00000488520	CCDC141	Q6ZP82	1450 aa		13.78	□□□□□ -0.2
USP4-213	ENST00000488520	TOM1	O60784	492 aa		13.77	□□□□□ -0.21
USP4-213	ENST00000488520	CEP162	Q5TB80	1403 aa		13.77	□□□□□ -0.21
USP4-213	ENST00000488520	VWDE	Q8N2E2	1590 aa		13.77	□□□□□ -0.21
USP4-213	ENST00000488520	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.77	□□□□□ -0.21
USP4-213	ENST00000488520	UGGT1	Q9NYU2	1555 aa		13.77	□□□□□ -0.21
USP4-213	ENST00000488520	WASHC2C	Q9Y4E1	1318 aa		13.77	□□□□□ -0.21
USP4-213	ENST00000488520	DEPDC5	O75140	1603 aa		13.76	□□□□□ -0.21
USP4-213	ENST00000488520	SPOCK2	Q92563	424 aa		13.76	□□□□□ -0.21
USP4-213	ENST00000488520	NCOA2	Q15596	1464 aa		13.75	□□□□□ -0.21
USP4-213	ENST00000488520	ANKLE2	Q86XL3	938 aa		13.75	□□□□□ -0.21
USP4-213	ENST00000488520	ZC3H13	Q5T200	1668 aa	Known RBP	13.74	□□□□□ -0.21
USP4-213	ENST00000488520	ALK	Q9UM73	1620 aa		13.74	□□□□□ -0.21
USP4-213	ENST00000488520	FAM135A	Q9P2D6	1515 aa		13.74	□□□□□ -0.21
USP4-213	ENST00000488520	XIRP1	Q702N8	1843 aa	Known RBP	13.74	□□□□□ -0.21
USP4-213	ENST00000488520	DCAF8	Q5TAQ9	597 aa		13.73	□□□□□ -0.21
USP4-213	ENST00000488520	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.73	□□□□□ -0.21
USP4-213	ENST00000488520	ARHGEF5	Q12774	1597 aa		13.73	□□□□□ -0.21
USP4-213	ENST00000488520	UBR1	Q8IWV7	1749 aa		13.73	□□□□□ -0.21
USP4-213	ENST00000488520	NPHP4	O75161	1426 aa	Predicted RBP	13.73	□□□□□ -0.21
USP4-213	ENST00000488520	MIA2	Q96PC5	1412 aa		13.73	□□□□□ -0.21
USP4-213	ENST00000488520	RNF17	Q9BXT8	1623 aa	Known RBP	13.72	□□□□□ -0.21
USP4-213	ENST00000488520	GALR2	O43603	387 aa	Predicted RBP	13.72	□□□□□ -0.21
USP4-213	ENST00000488520	NLRP1	Q9C000	1473 aa		13.72	□□□□□ -0.21
USP4-213	ENST00000488520	MED14	O60244	1454 aa		13.7	□□□□□ -0.22
USP4-213	ENST00000488520	TSPY4	P0CV99	314 aa		13.7	□□□□□ -0.22
USP4-213	ENST00000488520	TSPY10	P0CW01	314 aa		13.7	□□□□□ -0.22
USP4-213	ENST00000488520	KIF12	Q96FN5	646 aa		13.7	□□□□□ -0.22
USP4-213	ENST00000488520	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.69	□□□□□ -0.22
USP4-213	ENST00000488520	RSPH4A	Q5TD94	716 aa		13.69	□□□□□ -0.22
USP4-213	ENST00000488520	ABCC3	O15438	1527 aa		13.69	□□□□□ -0.22
USP4-213	ENST00000488520	GSE1	Q14687	1217 aa		13.68	□□□□□ -0.22
USP4-213	ENST00000488520	MS4A3	Q96HJ5	214 aa		13.68	□□□□□ -0.22
USP4-213	ENST00000488520	SYNM	O15061	1565 aa		13.67	□□□□□ -0.22
USP4-213	ENST00000488520	MAST1	Q9Y2H9	1570 aa		13.67	□□□□□ -0.22
USP4-213	ENST00000488520	MROH1	Q8NDA8	1641 aa		13.67	□□□□□ -0.22
USP4-213	ENST00000488520	LRRC7	Q96NW7	1537 aa		13.66	□□□□□ -0.22
USP4-213	ENST00000488520	ERVK-7	P63135	1459 aa		13.65	□□□□□ -0.22
USP4-213	ENST00000488520	MAP3K13	O43283	966 aa		13.64	□□□□□ -0.23
USP4-213	ENST00000488520	DCBLD2	Q96PD2	775 aa		13.64	□□□□□ -0.23
USP4-213	ENST00000488520	CROCC2	H7BZ55	1655 aa		13.63	□□□□□ -0.23
USP4-213	ENST00000488520	PIK3C2B	O00750	1634 aa		13.63	□□□□□ -0.23
USP4-213	ENST00000488520	LRRC9	Q6ZRR7	1453 aa		13.62	□□□□□ -0.23
USP4-213	ENST00000488520	MYO5B	Q9ULV0	1848 aa		13.61	□□□□□ -0.23
USP4-213	ENST00000488520	SGIP1	Q9BQI5	828 aa		13.6	□□□□□ -0.23
USP4-213	ENST00000488520	SCAF11	Q99590	1463 aa	Known RBP	13.6	□□□□□ -0.23
USP4-213	ENST00000488520	PYGB	P11216	843 aa		13.59	□□□□□ -0.23
USP4-213	ENST00000488520	LTK	P29376	864 aa		13.59	□□□□□ -0.23
USP4-213	ENST00000488520	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.59	□□□□□ -0.23
USP4-213	ENST00000488520	DUOX2	Q9NRD8	1548 aa		13.59	□□□□□ -0.23
USP4-213	ENST00000488520	POTEI	P0CG38	1075 aa		13.58	□□□□□ -0.24
USP4-213	ENST00000488520	KANK4	Q5T7N3	995 aa	Predicted RBP	13.58	□□□□□ -0.24
USP4-213	ENST00000488520	TXNDC2	Q86VQ3	553 aa		13.58	□□□□□ -0.24
USP4-213	ENST00000488520	PCDHB13	Q9Y5F0	798 aa		13.58	□□□□□ -0.24
USP4-213	ENST00000488520	VPS8	Q8N3P4	1428 aa		13.56	□□□□□ -0.24
USP4-213	ENST00000488520	SLIT1	O75093	1534 aa		13.56	□□□□□ -0.24
USP4-213	ENST00000488520	PTPN23	Q9H3S7	1636 aa		13.56	□□□□□ -0.24
USP4-213	ENST00000488520	MYOM3	Q5VTT5	1437 aa		13.56	□□□□□ -0.24
USP4-213	ENST00000488520	ARHGAP23	Q9P227	1491 aa		13.55	□□□□□ -0.24
USP4-213	ENST00000488520	PRDM15	P57071	1507 aa	Predicted RBP	13.55	□□□□□ -0.24
USP4-213	ENST00000488520	ROBO1	Q9Y6N7	1651 aa		13.55	□□□□□ -0.24
USP4-213	ENST00000488520	RRP7BP	Q9NSQ0	103 aa		13.54	□□□□□ -0.24
USP4-213	ENST00000488520	KDM5A	P29375	1690 aa	Known RBP	13.53	□□□□□ -0.24
USP4-213	ENST00000488520	RGS17	Q9UGC6	210 aa	Predicted RBP	13.53	□□□□□ -0.24
USP4-213	ENST00000488520	EID1	Q9Y6B2	187 aa		13.53	□□□□□ -0.24
USP4-213	ENST00000488520	KIF15	Q9NS87	1388 aa		13.53	□□□□□ -0.24
USP4-213	ENST00000488520	SETD1A	O15047	1707 aa	Known RBP	13.52	□□□□□ -0.25
USP4-213	ENST00000488520	PHLPP1	O60346	1717 aa		13.51	□□□□□ -0.25
USP4-213	ENST00000488520	CHRM1	P11229	460 aa	Predicted RBP	13.51	□□□□□ -0.25
USP4-213	ENST00000488520	RBM33	Q96EV2	1170 aa	Known RBP	13.51	□□□□□ -0.25
USP4-213	ENST00000488520	CHD2	O14647	1828 aa	Known RBP	13.5	□□□□□ -0.25
USP4-213	ENST00000488520	MAP3K1	Q13233	1512 aa		13.5	□□□□□ -0.25
USP4-213	ENST00000488520	EFCAB6	Q5THR3	1501 aa		13.5	□□□□□ -0.25
USP4-213	ENST00000488520	ABCC5	O15440	1437 aa		13.5	□□□□□ -0.25
USP4-213	ENST00000488520	ARHGAP31	Q2M1Z3	1444 aa		13.5	□□□□□ -0.25
USP4-213	ENST00000488520	IFNL1	Q8IU54	200 aa		13.5	□□□□□ -0.25
USP4-213	ENST00000488520	GCC2	Q8IWJ2	1684 aa		13.5	□□□□□ -0.25
USP4-213	ENST00000488520	ERBIN	Q96RT1	1412 aa		13.49	□□□□□ -0.25
USP4-213	ENST00000488520	TRPC6	Q9Y210	931 aa		13.49	□□□□□ -0.25
USP4-213	ENST00000488520	KANK1	Q14678	1352 aa		13.48	□□□□□ -0.25
USP4-213	ENST00000488520	TMEM2	Q9UHN6	1383 aa		13.48	□□□□□ -0.25
USP4-213	ENST00000488520	TET3	O43151	1660 aa		13.48	□□□□□ -0.25
USP4-213	ENST00000488520	SLC26A8	Q96RN1	970 aa		13.48	□□□□□ -0.25
USP4-213	ENST00000488520	CHIC2	Q9UKJ5	165 aa		13.48	□□□□□ -0.25
USP4-213	ENST00000488520	TMEM94	Q12767	1356 aa		13.47	□□□□□ -0.25
USP4-213	ENST00000488520	TIE1	P35590	1138 aa		13.47	□□□□□ -0.25
USP4-213	ENST00000488520	IDI1	Q13907	227 aa		13.47	□□□□□ -0.25
USP4-213	ENST00000488520	ASTL	Q6HA08	431 aa	Predicted RBP	13.47	□□□□□ -0.25
USP4-213	ENST00000488520	PROSER2	Q86WR7	435 aa	Predicted RBP	13.47	□□□□□ -0.25
USP4-213	ENST00000488520	DAPK1	P53355	1430 aa		13.47	□□□□□ -0.25
USP4-213	ENST00000488520	FAM135B	Q49AJ0	1406 aa		13.47	□□□□□ -0.25
USP4-213	ENST00000488520	POTEA	Q6S8J7	498 aa		13.46	□□□□□ -0.25
USP4-213	ENST00000488520	ATMIN	O43313	823 aa	Predicted RBP	13.45	□□□□□ -0.26
USP4-213	ENST00000488520	BCAN	Q96GW7	911 aa		13.45	□□□□□ -0.26
USP4-213	ENST00000488520	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.45	□□□□□ -0.26
USP4-213	ENST00000488520	ADGRB3	O60242	1522 aa		13.44	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms