RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 PLPPR3Q6T4P5 718 aa11.75□□□□□ -0.53
HPS4-206ENST00000439453 TNRQ92752 1358 aa11.74□□□□□ -0.53
HPS4-206ENST00000439453 NLRP1Q9C000 1473 aa11.74□□□□□ -0.53
HPS4-206ENST00000439453 TMEM131LA2VDJ0 1609 aa11.74□□□□□ -0.53
HPS4-206ENST00000439453 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.74□□□□□ -0.536e-6■□□□□ 8.2
HPS4-206ENST00000439453 CLTCL1P53675 1640 aa11.73□□□□□ -0.53
HPS4-206ENST00000439453 KANK1Q14678 1352 aa11.73□□□□□ -0.53
HPS4-206ENST00000439453 ADGRB3O60242 1522 aa11.72□□□□□ -0.53
HPS4-206ENST00000439453 PLA2R1Q13018 1463 aa11.72□□□□□ -0.53
HPS4-206ENST00000439453 ESF1Q9H501 851 aaKnown RBP11.72□□□□□ -0.53
HPS4-206ENST00000439453 PTPRTO14522 1441 aa11.72□□□□□ -0.53
HPS4-206ENST00000439453 NUP155O75694 1391 aa11.72□□□□□ -0.53
HPS4-206ENST00000439453 TRPM2O94759 1503 aa11.72□□□□□ -0.53
HPS4-206ENST00000439453 HSPA2P54652 639 aa11.7□□□□□ -0.54
HPS4-206ENST00000439453 SLIT1O75093 1534 aa11.7□□□□□ -0.54
HPS4-206ENST00000439453 ARHGAP23Q9P227 1491 aa11.69□□□□□ -0.54
HPS4-206ENST00000439453 B4GALNT3Q6L9W6 998 aa11.69□□□□□ -0.54
HPS4-206ENST00000439453 NOP58Q9Y2X3 529 aaKnown RBP11.69□□□□□ -0.54
HPS4-206ENST00000439453 KIF1BO60333 1816 aa11.68□□□□□ -0.54
HPS4-206ENST00000439453 PRKCSHP14314 528 aaPredicted RBP11.68□□□□□ -0.54
HPS4-206ENST00000439453 IFT172Q9UG01 1749 aa11.68□□□□□ -0.54
HPS4-206ENST00000439453 IQGAP1P46940 1657 aa11.67□□□□□ -0.54
HPS4-206ENST00000439453 WASHC2AQ641Q2 1341 aa11.67□□□□□ -0.54
HPS4-206ENST00000439453 STRCP1A6NGW2 1772 aa11.66□□□□□ -0.54
HPS4-206ENST00000439453 MED14O60244 1454 aa11.65□□□□□ -0.54
HPS4-206ENST00000439453 NBR1Q14596 966 aa11.65□□□□□ -0.54
HPS4-206ENST00000439453 CCDC184Q52MB2 194 aa11.65□□□□□ -0.54
HPS4-206ENST00000439453 HSPA5P11021 654 aaKnown RBP11.65□□□□□ -0.55
HPS4-206ENST00000439453 PPLO60437 1756 aa11.64□□□□□ -0.55
HPS4-206ENST00000439453 ZFYVE9O95405 1425 aa11.64□□□□□ -0.55
HPS4-206ENST00000439453 PAK3O75914 559 aaPredicted RBP11.64□□□□□ -0.55
HPS4-206ENST00000439453 NRXN3Q9Y4C0 1643 aa11.64□□□□□ -0.55
HPS4-206ENST00000439453 IDI1Q13907 227 aa11.63□□□□□ -0.55
HPS4-206ENST00000439453 SETD1AO15047 1707 aaKnown RBP11.63□□□□□ -0.55
HPS4-206ENST00000439453 ZBED9Q6R2W3 1325 aa11.62□□□□□ -0.55
HPS4-206ENST00000439453 NEXMIFQ5QGS0 1516 aa11.62□□□□□ -0.55
HPS4-206ENST00000439453 FAM9BQ8IZU0 186 aa11.61□□□□□ -0.55
HPS4-206ENST00000439453 LTBP4Q8N2S1 1624 aa11.61□□□□□ -0.55
HPS4-206ENST00000439453 PKD2Q13563 968 aa11.6□□□□□ -0.55
HPS4-206ENST00000439453 XIRP1Q702N8 1843 aaKnown RBP11.6□□□□□ -0.55
HPS4-206ENST00000439453 TMEM2Q9UHN6 1383 aa11.59□□□□□ -0.55
HPS4-206ENST00000439453 NCKAP5LQ9HCH0 1330 aa11.59□□□□□ -0.55
HPS4-206ENST00000439453 EIF4G2P78344 907 aaKnown RBP eCLIP11.59□□□□□ -0.55
HPS4-206ENST00000439453 FOXD1Q16676 465 aa11.59□□□□□ -0.55
HPS4-206ENST00000439453 MPHOSPH9Q99550 1183 aa11.59□□□□□ -0.55
HPS4-206ENST00000439453 PRKRIP1Q9H875 184 aaPredicted RBP11.59□□□□□ -0.55
HPS4-206ENST00000439453 SCAF11Q99590 1463 aaKnown RBP11.59□□□□□ -0.55
HPS4-206ENST00000439453 MRS2Q9HD23 443 aa11.59□□□□□ -0.55
HPS4-206ENST00000439453 SLC52A1Q9NWF4 448 aa11.58□□□□□ -0.56
HPS4-206ENST00000439453 SLC4A1APQ9BWU0 796 aaKnown RBP11.57□□□□□ -0.56
HPS4-206ENST00000439453 SPATA31E1Q6ZUB1 1445 aa11.57□□□□□ -0.56
HPS4-206ENST00000439453 LTKP29376 864 aa11.57□□□□□ -0.56
HPS4-206ENST00000439453 IPO9Q96P70 1041 aaKnown RBP11.57□□□□□ -0.56
HPS4-206ENST00000439453 CHD2O14647 1828 aaKnown RBP11.57□□□□□ -0.56
HPS4-206ENST00000439453 ANP32AP39687 249 aaKnown RBP11.56□□□□□ -0.56
HPS4-206ENST00000439453 NPHP4O75161 1426 aaPredicted RBP11.56□□□□□ -0.56
HPS4-206ENST00000439453 RTL5Q5HYW3 569 aaPredicted RBP11.56□□□□□ -0.56
HPS4-206ENST00000439453 SETBP1Q9Y6X0 1596 aa11.55□□□□□ -0.56
HPS4-206ENST00000439453 ANKRD30BQ9BXX2 1392 aa11.55□□□□□ -0.56
HPS4-206ENST00000439453 CCDC7Q96M83 1385 aa11.55□□□□□ -0.56
HPS4-206ENST00000439453 NWD1Q149M9 1564 aa11.55□□□□□ -0.56
HPS4-206ENST00000439453 THEMISQ8N1K5 641 aaPredicted RBP11.55□□□□□ -0.56
HPS4-206ENST00000439453 RIMS2Q9UQ26 1411 aa11.55□□□□□ -0.56
HPS4-206ENST00000439453 C11orf95C9JLR9 678 aaPredicted RBP11.54□□□□□ -0.56
HPS4-206ENST00000439453 ANO8Q9HCE9 1232 aaPredicted RBP11.54□□□□□ -0.56
HPS4-206ENST00000439453 ZBTB47Q9UFB7 747 aaPredicted RBP11.54□□□□□ -0.56
HPS4-206ENST00000439453 SMG6Q86US8 1419 aaKnown RBP11.53□□□□□ -0.56
HPS4-206ENST00000439453 DIP2AQ14689 1571 aa11.52□□□□□ -0.56
HPS4-206ENST00000439453 CCDC136Q96JN2 1154 aa11.52□□□□□ -0.56
HPS4-206ENST00000439453 ADAMTS13Q76LX8 1427 aa11.52□□□□□ -0.57
HPS4-206ENST00000439453 XRN1Q8IZH2 1706 aaKnown RBP11.52□□□□□ -0.57
HPS4-206ENST00000439453 PLEKHG1Q9ULL1 1385 aa11.51□□□□□ -0.57
HPS4-206ENST00000439453 CCDC144AA2RUR9 1427 aa11.5□□□□□ -0.57
HPS4-206ENST00000439453 ALKQ9UM73 1620 aa11.5□□□□□ -0.57
HPS4-206ENST00000439453 RNF123Q5XPI4 1314 aa11.5□□□□□ -0.57
HPS4-206ENST00000439453 ANKLE2Q86XL3 938 aa11.5□□□□□ -0.57
HPS4-206ENST00000439453 NRXN1Q9ULB1 1477 aa11.5□□□□□ -0.57
HPS4-206ENST00000439453 L3MBTL2Q969R5 705 aa11.49□□□□□ -0.57
HPS4-206ENST00000439453 NUDCQ9Y266 331 aa11.49□□□□□ -0.57
HPS4-206ENST00000439453 ASXL1Q8IXJ9 1541 aa11.49□□□□□ -0.57
HPS4-206ENST00000439453 ZNF335Q9H4Z2 1342 aaPredicted RBP11.48□□□□□ -0.57
HPS4-206ENST00000439453 TXNDC2Q86VQ3 553 aa11.48□□□□□ -0.57
HPS4-206ENST00000439453 SALL2Q9Y467 1007 aaPredicted RBP11.48□□□□□ -0.57
HPS4-206ENST00000439453 MYOM2P54296 1465 aa11.47□□□□□ -0.57
HPS4-206ENST00000439453 DMRT2Q9Y5R5 561 aa11.47□□□□□ -0.57
HPS4-206ENST00000439453 KIF7Q2M1P5 1343 aa11.47□□□□□ -0.57
HPS4-206ENST00000439453 CPS1P31327 1500 aa11.46□□□□□ -0.57
HPS4-206ENST00000439453 IL27Q8NEV9 243 aa11.46□□□□□ -0.57
HPS4-206ENST00000439453 PTPRUQ92729 1446 aa11.46□□□□□ -0.57
HPS4-206ENST00000439453 KNDC1Q76NI1 1749 aa11.46□□□□□ -0.58
HPS4-206ENST00000439453 LRRC7Q96NW7 1537 aa11.45□□□□□ -0.58
HPS4-206ENST00000439453 LAMC1P11047 1609 aa11.45□□□□□ -0.58
HPS4-206ENST00000439453 NUTM2DQ5VT03 806 aaPredicted RBP11.45□□□□□ -0.58
HPS4-206ENST00000439453 PIK3C2GO75747 1445 aa11.45□□□□□ -0.58
HPS4-206ENST00000439453 IQSEC2Q5JU85 1478 aa11.45□□□□□ -0.58
HPS4-206ENST00000439453 STAG3Q9UJ98 1225 aa11.44□□□□□ -0.58
HPS4-206ENST00000439453 NBPF8Q3BBV2 869 aa11.44□□□□□ -0.58
HPS4-206ENST00000439453 CHGAP10645 457 aaKnown RBP11.43□□□□□ -0.58
HPS4-206ENST00000439453 PRAG1Q86YV5 1406 aa11.43□□□□□ -0.58
HPS4-206ENST00000439453 EID1Q9Y6B2 187 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms