RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 PRAG1Q86YV5 1406 aa12.9□□□□□ -0.34
CUX1-206ENST00000437600 RALGAPBQ86X10 1494 aa12.9□□□□□ -0.34
CUX1-206ENST00000437600 CLTCQ00610 1675 aaKnown RBP12.9□□□□□ -0.34
CUX1-206ENST00000437600 CAMSAP1Q5T5Y3 1602 aa12.89□□□□□ -0.35
CUX1-206ENST00000437600 CLTCL1P53675 1640 aa12.89□□□□□ -0.35
CUX1-206ENST00000437600 CEBPAP49715 358 aaPredicted RBP12.89□□□□□ -0.35
CUX1-206ENST00000437600 B4GALNT3Q6L9W6 998 aa12.89□□□□□ -0.35
CUX1-206ENST00000437600 CC2D1BQ5T0F9 858 aaKnown RBP12.87□□□□□ -0.35
CUX1-206ENST00000437600 ESF1Q9H501 851 aaKnown RBP12.87□□□□□ -0.35
CUX1-206ENST00000437600 RBM19Q9Y4C8 960 aaKnown RBP12.86□□□□□ -0.35
CUX1-206ENST00000437600 TRPM2O94759 1503 aa12.85□□□□□ -0.35
CUX1-206ENST00000437600 LMTK2Q8IWU2 1503 aa12.83□□□□□ -0.35
CUX1-206ENST00000437600 PTPRTO14522 1441 aa12.83□□□□□ -0.36
CUX1-206ENST00000437600 MROH2AA6NES4 1674 aa12.83□□□□□ -0.36
CUX1-206ENST00000437600 IDI1Q13907 227 aa12.83□□□□□ -0.36
CUX1-206ENST00000437600 CFAP70Q5T0N1 1121 aa12.83□□□□□ -0.36
CUX1-206ENST00000437600 REREQ9P2R6 1566 aa12.83□□□□□ -0.36
CUX1-206ENST00000437600 AGLP35573 1532 aa12.83□□□□□ -0.36
CUX1-206ENST00000437600 PNISRQ8TF01 805 aaKnown RBP12.83□□□□□ -0.36
CUX1-206ENST00000437600 ADGRF5Q8IZF2 1346 aa12.82□□□□□ -0.36
CUX1-206ENST00000437600 SYNMO15061 1565 aa12.82□□□□□ -0.36
CUX1-206ENST00000437600 MYO5BQ9ULV0 1848 aa12.82□□□□□ -0.36
CUX1-206ENST00000437600 ZBED9Q6R2W3 1325 aa12.81□□□□□ -0.36
CUX1-206ENST00000437600 PREX1Q8TCU6 1659 aa12.81□□□□□ -0.36
CUX1-206ENST00000437600 ZMYM3Q14202 1370 aa12.81□□□□□ -0.36
CUX1-206ENST00000437600 KIF1BO60333 1816 aa12.81□□□□□ -0.36
CUX1-206ENST00000437600 TRPM1Q7Z4N2 1603 aa12.8□□□□□ -0.36
CUX1-206ENST00000437600 DISP3Q9P2K9 1392 aa12.8□□□□□ -0.36
CUX1-206ENST00000437600 ZC3H13Q5T200 1668 aaKnown RBP12.8□□□□□ -0.36
CUX1-206ENST00000437600 TESK2Q96S53 571 aa12.8□□□□□ -0.36
CUX1-206ENST00000437600 PANK3Q9H999 370 aa12.8□□□□□ -0.36
CUX1-206ENST00000437600 DAXXQ9UER7 740 aaPredicted RBP12.78□□□□□ -0.36
CUX1-206ENST00000437600 NOS1P29475 1434 aa12.78□□□□□ -0.36
CUX1-206ENST00000437600 STAG3Q9UJ98 1225 aa12.78□□□□□ -0.36
CUX1-206ENST00000437600 FER1L4A9Z1Z3 1794 aa12.77□□□□□ -0.37
CUX1-206ENST00000437600 TMEM132EQ6IEE7 984 aa12.77□□□□□ -0.37
CUX1-206ENST00000437600 ERVK-7P63135 1459 aa12.76□□□□□ -0.37
CUX1-206ENST00000437600 GPRASP1Q5JY77 1395 aa12.76□□□□□ -0.37
CUX1-206ENST00000437600 PER1O15534 1290 aaPredicted RBP12.75□□□□□ -0.37
CUX1-206ENST00000437600 ARHGAP31Q2M1Z3 1444 aa12.75□□□□□ -0.37
CUX1-206ENST00000437600 CDCA7LQ96GN5 454 aa12.75□□□□□ -0.37
CUX1-206ENST00000437600 PPP4R2Q9NY27 417 aa12.75□□□□□ -0.37
CUX1-206ENST00000437600 MADDQ8WXG6 1647 aa12.75□□□□□ -0.37
CUX1-206ENST00000437600 TMF1P82094 1093 aa12.74□□□□□ -0.37
CUX1-206ENST00000437600 TRAK1Q9UPV9 953 aa12.74□□□□□ -0.37
CUX1-206ENST00000437600 POLR1AO95602 1720 aaPredicted RBP12.74□□□□□ -0.37
CUX1-206ENST00000437600 C3P01024 1663 aa12.73□□□□□ -0.37
CUX1-206ENST00000437600 RIMS1Q86UR5 1692 aaKnown RBP12.73□□□□□ -0.37
CUX1-206ENST00000437600 PIK3C2BO00750 1634 aa12.73□□□□□ -0.37
CUX1-206ENST00000437600 ADGRB3O60242 1522 aa12.72□□□□□ -0.37
CUX1-206ENST00000437600 NUDCQ9Y266 331 aa12.72□□□□□ -0.37
CUX1-206ENST00000437600 MYBBP1AQ9BQG0 1328 aaKnown RBP12.72□□□□□ -0.37
CUX1-206ENST00000437600 SAFB2Q14151 953 aaKnown RBP eCLIP12.71□□□□□ -0.37
CUX1-206ENST00000437600 PPP6R1Q9UPN7 881 aa12.71□□□□□ -0.37
CUX1-206ENST00000437600 SLC52A1Q9NWF4 448 aa12.7□□□□□ -0.38
CUX1-206ENST00000437600 RALBP1Q15311 655 aa12.7□□□□□ -0.38
CUX1-206ENST00000437600 SPATA31D1Q6ZQQ2 1576 aa12.69□□□□□ -0.38
CUX1-206ENST00000437600 TMEM131LA2VDJ0 1609 aa12.69□□□□□ -0.38
CUX1-206ENST00000437600 PLIN1O60240 522 aa12.69□□□□□ -0.38
CUX1-206ENST00000437600 TNRQ92752 1358 aa12.69□□□□□ -0.38
CUX1-206ENST00000437600 PPLO60437 1756 aa12.69□□□□□ -0.38
CUX1-206ENST00000437600 IFT172Q9UG01 1749 aa12.69□□□□□ -0.38
CUX1-206ENST00000437600 STK26Q9P289 416 aa12.68□□□□□ -0.38
CUX1-206ENST00000437600 MSH5O43196 834 aa12.67□□□□□ -0.38
CUX1-206ENST00000437600 NLRP13Q86W25 1043 aa12.67□□□□□ -0.38
CUX1-206ENST00000437600 SCAF11Q99590 1463 aaKnown RBP12.67□□□□□ -0.38
CUX1-206ENST00000437600 KTN1Q86UP2 1357 aaKnown RBP12.67□□□□□ -0.38
CUX1-206ENST00000437600 CCDC136Q96JN2 1154 aa12.67□□□□□ -0.38
CUX1-206ENST00000437600 NEXMIFQ5QGS0 1516 aa12.66□□□□□ -0.38
CUX1-206ENST00000437600 ADAMTS8Q9UP79 889 aa12.66□□□□□ -0.38
CUX1-206ENST00000437600 A2ML1A8K2U0 1454 aa12.65□□□□□ -0.38
CUX1-206ENST00000437600 KNSTRNQ9Y448 316 aa12.65□□□□□ -0.38
CUX1-206ENST00000437600 TNNT2P45379 298 aaPredicted RBP12.64□□□□□ -0.39
CUX1-206ENST00000437600 EIF5BO60841 1220 aaKnown RBP12.64□□□□□ -0.39
CUX1-206ENST00000437600 SKAP1Q86WV1 359 aa12.64□□□□□ -0.39
CUX1-206ENST00000437600 EXOC6Q8TAG9 804 aa12.64□□□□□ -0.39
CUX1-206ENST00000437600 ADAMTSL3P82987 1691 aa12.63□□□□□ -0.39
CUX1-206ENST00000437600 STAC3Q96MF2 364 aa12.63□□□□□ -0.39
CUX1-206ENST00000437600 BRD4O60885 1362 aaPredicted RBP12.62□□□□□ -0.39
CUX1-206ENST00000437600 CCDC146Q8IYE0 955 aa12.62□□□□□ -0.39
CUX1-206ENST00000437600 C14orf93Q9H972 538 aaKnown RBP12.62□□□□□ -0.39
CUX1-206ENST00000437600 VGFO15240 615 aaPredicted RBP12.62□□□□□ -0.39
CUX1-206ENST00000437600 SMG6Q86US8 1419 aaKnown RBP12.62□□□□□ -0.39
CUX1-206ENST00000437600 EIF3AQ14152 1382 aaKnown RBP12.62□□□□□ -0.39
CUX1-206ENST00000437600 LTKP29376 864 aa12.62□□□□□ -0.39
CUX1-206ENST00000437600 PIK3C2GO75747 1445 aa12.61□□□□□ -0.39
CUX1-206ENST00000437600 UBR1Q8IWV7 1749 aa12.61□□□□□ -0.39
CUX1-206ENST00000437600 RIMS2Q9UQ26 1411 aa12.61□□□□□ -0.39
CUX1-206ENST00000437600 MYOM2P54296 1465 aa12.61□□□□□ -0.39
CUX1-206ENST00000437600 CENPJQ9HC77 1338 aaPredicted RBP12.61□□□□□ -0.39
CUX1-206ENST00000437600 IQGAP1P46940 1657 aa12.61□□□□□ -0.39
CUX1-206ENST00000437600 RCAN3Q9UKA8 241 aa12.61□□□□□ -0.39
CUX1-206ENST00000437600 LAMC1P11047 1609 aa12.61□□□□□ -0.39
CUX1-206ENST00000437600 PARD3Q8TEW0 1356 aa12.6□□□□□ -0.39
CUX1-206ENST00000437600 LRPPRCP42704 1394 aaKnown RBP12.6□□□□□ -0.39
CUX1-206ENST00000437600 SLC12A5Q9H2X9 1139 aa12.59□□□□□ -0.39
CUX1-206ENST00000437600 SLC26A8Q96RN1 970 aa12.59□□□□□ -0.39
CUX1-206ENST00000437600 PPP2R1AP30153 589 aa12.59□□□□□ -0.39
CUX1-206ENST00000437600 CDCA8Q53HL2 280 aa12.59□□□□□ -0.39
CUX1-206ENST00000437600 MYO3AQ8NEV4 1616 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms