RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 COL17A1Q9UMD9 1497 aaPredicted RBP14.91□□□□□ -0.02
TCOF1-203ENST00000394269 BRD4O60885 1362 aaPredicted RBP14.91□□□□□ -0.02
TCOF1-203ENST00000394269 CENPJQ9HC77 1338 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-203ENST00000394269 VGFO15240 615 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-203ENST00000394269 SLC12A5Q9H2X9 1139 aa14.9□□□□□ -0.02
TCOF1-203ENST00000394269 WDR43Q15061 677 aaKnown RBP eCLIP14.89□□□□□ -0.037e-6■■■■■ 27.3
TCOF1-203ENST00000394269 TET3O43151 1660 aa14.89□□□□□ -0.03
TCOF1-203ENST00000394269 NUDCQ9Y266 331 aa14.88□□□□□ -0.03
TCOF1-203ENST00000394269 NEO1Q92859 1461 aa14.88□□□□□ -0.03
TCOF1-203ENST00000394269 CDCA7LQ96GN5 454 aa14.88□□□□□ -0.03
TCOF1-203ENST00000394269 TSHZ2Q9NRE2 1034 aa14.88□□□□□ -0.03
TCOF1-203ENST00000394269 ADAMTS8Q9UP79 889 aa14.88□□□□□ -0.03
TCOF1-203ENST00000394269 SPHKAPQ2M3C7 1700 aa14.88□□□□□ -0.03
TCOF1-203ENST00000394269 C14orf93Q9H972 538 aaKnown RBP14.87□□□□□ -0.03
TCOF1-203ENST00000394269 PPP2R1AP30153 589 aa14.87□□□□□ -0.03
TCOF1-203ENST00000394269 PARD3Q8TEW0 1356 aa14.87□□□□□ -0.03
TCOF1-203ENST00000394269 EIF2AK4Q9P2K8 1649 aaKnown RBP14.87□□□□□ -0.03
TCOF1-203ENST00000394269 MROH1Q8NDA8 1641 aa14.86□□□□□ -0.03
TCOF1-203ENST00000394269 EFCAB6Q5THR3 1501 aa14.86□□□□□ -0.03
TCOF1-203ENST00000394269 CCDC146Q8IYE0 955 aa14.86□□□□□ -0.03
TCOF1-203ENST00000394269 HECW2Q9P2P5 1572 aa14.86□□□□□ -0.03
TCOF1-203ENST00000394269 AMER1Q5JTC6 1135 aaPredicted RBP14.86□□□□□ -0.03
TCOF1-203ENST00000394269 CABP2Q9NPB3 220 aa14.85□□□□□ -0.03
TCOF1-203ENST00000394269 PPRC1Q5VV67 1664 aaKnown RBP14.85□□□□□ -0.03
TCOF1-203ENST00000394269 DEPDC5O75140 1603 aa14.85□□□□□ -0.03
TCOF1-203ENST00000394269 POGKQ9P215 609 aa14.85□□□□□ -0.03
TCOF1-203ENST00000394269 FRMPD1Q5SYB0 1578 aa14.84□□□□□ -0.03
TCOF1-203ENST00000394269 CEP152O94986 1710 aa14.84□□□□□ -0.03
TCOF1-203ENST00000394269 POLR1AO95602 1720 aaPredicted RBP14.84□□□□□ -0.03
TCOF1-203ENST00000394269 TSPOAP1O95153 1857 aa14.84□□□□□ -0.03
TCOF1-203ENST00000394269 SRPK2P78362 688 aaKnown RBP14.84□□□□□ -0.03
TCOF1-203ENST00000394269 CARD14Q9BXL6 1004 aa14.84□□□□□ -0.03
TCOF1-203ENST00000394269 VWDEQ8N2E2 1590 aa14.84□□□□□ -0.03
TCOF1-203ENST00000394269 MADDQ8WXG6 1647 aa14.83□□□□□ -0.03
TCOF1-203ENST00000394269 SLC52A1Q9NWF4 448 aa14.83□□□□□ -0.04
TCOF1-203ENST00000394269 MINK1Q8N4C8 1332 aaPredicted RBP14.83□□□□□ -0.04
TCOF1-203ENST00000394269 ABCA6Q8N139 1617 aa14.83□□□□□ -0.04
TCOF1-203ENST00000394269 RNF17Q9BXT8 1623 aaKnown RBP14.83□□□□□ -0.04
TCOF1-203ENST00000394269 RIMBP3CA6NJZ7 1639 aa14.82□□□□□ -0.04
TCOF1-203ENST00000394269 RIMBP3BA6NNM3 1639 aa14.82□□□□□ -0.04
TCOF1-203ENST00000394269 RIMBP3Q9UFD9 1639 aa14.82□□□□□ -0.04
TCOF1-203ENST00000394269 PPP4R2Q9NY27 417 aa14.82□□□□□ -0.04
TCOF1-203ENST00000394269 ABCC3O15438 1527 aa14.81□□□□□ -0.04
TCOF1-203ENST00000394269 RPGRIP1LQ68CZ1 1315 aa14.81□□□□□ -0.04
TCOF1-203ENST00000394269 MORC1Q86VD1 984 aa14.8□□□□□ -0.04
TCOF1-203ENST00000394269 NEUROD2Q15784 382 aa14.8□□□□□ -0.04
TCOF1-203ENST00000394269 CFAP74Q9C0B2 1584 aa14.8□□□□□ -0.04
TCOF1-203ENST00000394269 PLEKHG5O94827 1062 aa14.79□□□□□ -0.04
TCOF1-203ENST00000394269 PRAM1Q96QH2 718 aa14.79□□□□□ -0.04
TCOF1-203ENST00000394269 LRPPRCP42704 1394 aaKnown RBP14.78□□□□□ -0.04
TCOF1-203ENST00000394269 PLIN1O60240 522 aa14.78□□□□□ -0.04
TCOF1-203ENST00000394269 CCDC136Q96JN2 1154 aa14.77□□□□□ -0.04
TCOF1-203ENST00000394269 RCAN3Q9UKA8 241 aa14.77□□□□□ -0.04
TCOF1-203ENST00000394269 DIP2CQ9Y2E4 1556 aa14.77□□□□□ -0.05
TCOF1-203ENST00000394269 SMG6Q86US8 1419 aaKnown RBP14.76□□□□□ -0.05
TCOF1-203ENST00000394269 KIF1BO60333 1816 aa14.76□□□□□ -0.05
TCOF1-203ENST00000394269 EVC2Q86UK5 1308 aa14.76□□□□□ -0.05
TCOF1-203ENST00000394269 LMTK2Q8IWU2 1503 aa14.75□□□□□ -0.05
TCOF1-203ENST00000394269 MAP3K4Q9Y6R4 1608 aa14.75□□□□□ -0.05
TCOF1-203ENST00000394269 APAF1O14727 1248 aa14.75□□□□□ -0.05
TCOF1-203ENST00000394269 WAPLQ7Z5K2 1190 aa14.75□□□□□ -0.05
TCOF1-203ENST00000394269 ERVK-7P63135 1459 aa14.74□□□□□ -0.05
TCOF1-203ENST00000394269 MYOM2P54296 1465 aa14.74□□□□□ -0.05
TCOF1-203ENST00000394269 PIK3C2GO75747 1445 aa14.74□□□□□ -0.05
TCOF1-203ENST00000394269 CEBPAP49715 358 aaPredicted RBP14.73□□□□□ -0.05
TCOF1-203ENST00000394269 MROH2AA6NES4 1674 aa14.73□□□□□ -0.05
TCOF1-203ENST00000394269 RRP7AQ9Y3A4 280 aaKnown RBP14.72□□□□□ -0.05
TCOF1-203ENST00000394269 NSD3Q9BZ95 1437 aa14.72□□□□□ -0.05
TCOF1-203ENST00000394269 GGNBP2Q9H3C7 697 aa14.72□□□□□ -0.05
TCOF1-203ENST00000394269 LAMC1P11047 1609 aa14.71□□□□□ -0.05
TCOF1-203ENST00000394269 ADGRB3O60242 1522 aa14.71□□□□□ -0.05
TCOF1-203ENST00000394269 PPM1GO15355 546 aaPredicted RBP14.71□□□□□ -0.05
TCOF1-203ENST00000394269 MTHFSP49914 203 aa14.7□□□□□ -0.06
TCOF1-203ENST00000394269 EXOC6Q8TAG9 804 aa14.7□□□□□ -0.06
TCOF1-203ENST00000394269 RBM19Q9Y4C8 960 aaKnown RBP14.7□□□□□ -0.06
TCOF1-203ENST00000394269 NUTM2FA1L443 756 aa14.7□□□□□ -0.06
TCOF1-203ENST00000394269 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.7□□□□□ -0.06
TCOF1-203ENST00000394269 ASXL1Q8IXJ9 1541 aa14.69□□□□□ -0.06
TCOF1-203ENST00000394269 RRP1P56182 461 aaKnown RBP14.69□□□□□ -0.06
TCOF1-203ENST00000394269 TXNDC2Q86VQ3 553 aa14.69□□□□□ -0.06
TCOF1-203ENST00000394269 CGNL1Q0VF96 1302 aa14.69□□□□□ -0.06
TCOF1-203ENST00000394269 PDE3BQ13370 1112 aa14.69□□□□□ -0.06
TCOF1-203ENST00000394269 IQGAP1P46940 1657 aa14.68□□□□□ -0.06
TCOF1-203ENST00000394269 DIP2BQ9P265 1576 aa14.68□□□□□ -0.06
TCOF1-203ENST00000394269 CDK19Q9BWU1 502 aa14.68□□□□□ -0.06
TCOF1-203ENST00000394269 CABP1Q9NZU7 370 aa14.68□□□□□ -0.06
TCOF1-203ENST00000394269 ERICH6BQ5W0A0 696 aa14.67□□□□□ -0.06
TCOF1-203ENST00000394269 CAMSAP1Q5T5Y3 1602 aa14.67□□□□□ -0.06
TCOF1-203ENST00000394269 RICTORQ6R327 1708 aa14.67□□□□□ -0.06
TCOF1-203ENST00000394269 U2SURPO15042 1029 aaKnown RBP14.67□□□□□ -0.06
TCOF1-203ENST00000394269 FBLN1P23142 703 aa14.67□□□□□ -0.06
TCOF1-203ENST00000394269 GOLGA2Q08379 1002 aa14.67□□□□□ -0.06
TCOF1-203ENST00000394269 SYNMO15061 1565 aa14.67□□□□□ -0.06
TCOF1-203ENST00000394269 SIGLEC1Q9BZZ2 1709 aa14.66□□□□□ -0.06
TCOF1-203ENST00000394269 U2AF1L5P0DN76 240 aaPredicted RBP14.66□□□□□ -0.06
TCOF1-203ENST00000394269 U2AF1Q01081 240 aaKnown RBP eCLIP14.66□□□□□ -0.06
TCOF1-203ENST00000394269 ARHGAP31Q2M1Z3 1444 aa14.66□□□□□ -0.06
TCOF1-203ENST00000394269 NRXN1Q9ULB1 1477 aa14.65□□□□□ -0.06
TCOF1-203ENST00000394269 ZMYM3Q14202 1370 aa14.65□□□□□ -0.06
TCOF1-203ENST00000394269 PLEKHH1Q9ULM0 1364 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms