RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 NISCHQ9Y2I1 1504 aa23.58■■□□□ 1.36
TCOF1-203ENST00000394269 DCAF8L2P0C7V8 631 aa20.37■□□□□ 0.85
TCOF1-203ENST00000394269 SHROOM4Q9ULL8 1493 aa20.3■□□□□ 0.84
TCOF1-203ENST00000394269 CCDC180Q9P1Z9 1646 aa19.97■□□□□ 0.79
TCOF1-203ENST00000394269 SUPT5HO00267 1087 aaKnown RBP19.8■□□□□ 0.76
TCOF1-203ENST00000394269 ZCCHC6Q5VYS8 1495 aaKnown RBP19.79■□□□□ 0.76
TCOF1-203ENST00000394269 ABCC9O60706 1549 aa19.35■□□□□ 0.69
TCOF1-203ENST00000394269 DCAF1Q9Y4B6 1507 aa19.14■□□□□ 0.65
TCOF1-203ENST00000394269 SCRIBQ14160 1630 aa19■□□□□ 0.63
TCOF1-203ENST00000394269 CHIC1Q5VXU3 224 aa18.82■□□□□ 0.6
TCOF1-203ENST00000394269 NACADO15069 1562 aa18.72■□□□□ 0.59
TCOF1-203ENST00000394269 MYO15BQ96JP2 1530 aa18.7■□□□□ 0.58
TCOF1-203ENST00000394269 PABPN1Q86U42 306 aaKnown RBP eCLIP18.61■□□□□ 0.57
TCOF1-203ENST00000394269 RSF1Q96T23 1441 aaPredicted RBP18.61■□□□□ 0.57
TCOF1-203ENST00000394269 CECR2Q9BXF3 1484 aa18.56■□□□□ 0.56
TCOF1-203ENST00000394269 RB1CC1Q8TDY2 1594 aa18.55■□□□□ 0.56
TCOF1-203ENST00000394269 LOC105371045A0A1W2PR82 267 aa18.42■□□□□ 0.54
TCOF1-203ENST00000394269 EHMT2Q96KQ7 1210 aa18.4■□□□□ 0.54
TCOF1-203ENST00000394269 FAM9AQ8IZU1 332 aaPredicted RBP18.39■□□□□ 0.53
TCOF1-203ENST00000394269 MROH2BQ7Z745 1585 aa18.38■□□□□ 0.53
TCOF1-203ENST00000394269 TRIM41Q8WV44 630 aa18.37■□□□□ 0.53
TCOF1-203ENST00000394269 WIZO95785 1651 aa18.22■□□□□ 0.51
TCOF1-203ENST00000394269 BAZ1AQ9NRL2 1556 aaPredicted RBP18.13■□□□□ 0.49
TCOF1-203ENST00000394269 UNC13AQ9UPW8 1703 aa18.07■□□□□ 0.48
TCOF1-203ENST00000394269 PCGF6Q9BYE7 350 aa18.04■□□□□ 0.48
TCOF1-203ENST00000394269 BICRAQ9NZM4 1560 aa17.99■□□□□ 0.47
TCOF1-203ENST00000394269 SMARCA4P51532 1647 aa17.98■□□□□ 0.47
TCOF1-203ENST00000394269 CCDC88BA6NC98 1476 aa17.92■□□□□ 0.46
TCOF1-203ENST00000394269 TOP2AP11388 1531 aaKnown RBP17.85■□□□□ 0.45
TCOF1-203ENST00000394269 ABCC8Q09428 1581 aa17.78■□□□□ 0.44
TCOF1-203ENST00000394269 PPARGC1BQ86YN6 1023 aaKnown RBP17.78■□□□□ 0.44
TCOF1-203ENST00000394269 SMARCA2P51531 1590 aa17.76■□□□□ 0.43
TCOF1-203ENST00000394269 ATAD2BQ9ULI0 1458 aa17.73■□□□□ 0.43
TCOF1-203ENST00000394269 BAZ1BQ9UIG0 1483 aaKnown RBP17.72■□□□□ 0.43
TCOF1-203ENST00000394269 TTBK1Q5TCY1 1321 aaPredicted RBP17.65■□□□□ 0.42
TCOF1-203ENST00000394269 UBTFP17480 764 aaKnown RBP17.64■□□□□ 0.41
TCOF1-203ENST00000394269 SOGA1O94964 1423 aa17.61■□□□□ 0.41
TCOF1-203ENST00000394269 TRIM26Q12899 539 aaPredicted RBP17.6■□□□□ 0.41
TCOF1-203ENST00000394269 RANGAP1P46060 587 aaPredicted RBP17.6■□□□□ 0.41
TCOF1-203ENST00000394269 CSRNP3Q8WYN3 585 aa17.56■□□□□ 0.4
TCOF1-203ENST00000394269 WRNQ14191 1432 aaPredicted RBP eCLIP17.55■□□□□ 0.4
TCOF1-203ENST00000394269 EIF4G1Q04637 1599 aaKnown RBP17.54■□□□□ 0.4
TCOF1-203ENST00000394269 HRCP23327 699 aa17.54■□□□□ 0.4
TCOF1-203ENST00000394269 RUSC2Q8N2Y8 1516 aa17.52■□□□□ 0.4
TCOF1-203ENST00000394269 PEG3Q9GZU2 1588 aa17.51■□□□□ 0.39
TCOF1-203ENST00000394269 NCAPD3P42695 1498 aa17.41■□□□□ 0.38
TCOF1-203ENST00000394269 SYNJ1O43426 1573 aa17.34■□□□□ 0.37
TCOF1-203ENST00000394269 DNAJC5BQ9UF47 199 aa17.3■□□□□ 0.36
TCOF1-203ENST00000394269 CEP162Q5TB80 1403 aa17.3■□□□□ 0.36
TCOF1-203ENST00000394269 EEA1Q15075 1411 aa17.26■□□□□ 0.35
TCOF1-203ENST00000394269 TNIKQ9UKE5 1360 aa17.25■□□□□ 0.35
TCOF1-203ENST00000394269 HMGXB3Q12766 1538 aa17.25■□□□□ 0.35
TCOF1-203ENST00000394269 GOLGA3Q08378 1498 aa17.21■□□□□ 0.34
TCOF1-203ENST00000394269 CC2D2AQ9P2K1 1620 aa17.2■□□□□ 0.34
TCOF1-203ENST00000394269 CADPSQ9ULU8 1353 aa17.17■□□□□ 0.34
TCOF1-203ENST00000394269 CFTRP13569 1480 aa17.17■□□□□ 0.34
TCOF1-203ENST00000394269 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.16■□□□□ 0.34
TCOF1-203ENST00000394269 APLP2Q06481 763 aa17.16■□□□□ 0.34
TCOF1-203ENST00000394269 RAPGEF2Q9Y4G8 1499 aa17.14■□□□□ 0.34
TCOF1-203ENST00000394269 CEP164Q9UPV0 1460 aa17.14■□□□□ 0.33
TCOF1-203ENST00000394269 CLIP1P30622 1438 aa17.1■□□□□ 0.33
TCOF1-203ENST00000394269 CUX1P39880 1505 aa17.1■□□□□ 0.33
TCOF1-203ENST00000394269 CCER1Q8TC90 406 aaPredicted RBP17.09■□□□□ 0.33
TCOF1-203ENST00000394269 TOP2BQ02880 1626 aa17.08■□□□□ 0.33
TCOF1-203ENST00000394269 NESP48681 1621 aa17.05■□□□□ 0.32
TCOF1-203ENST00000394269 KIF27Q86VH2 1401 aa17.05■□□□□ 0.32
TCOF1-203ENST00000394269 HNRNPUL2Q1KMD3 747 aaKnown RBP17.04■□□□□ 0.32
TCOF1-203ENST00000394269 CUX2O14529 1486 aa17.01■□□□□ 0.31
TCOF1-203ENST00000394269 FANCD2Q9BXW9 1451 aa16.99■□□□□ 0.31
TCOF1-203ENST00000394269 ZEB1P37275 1124 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-203ENST00000394269 ATP1B4Q9UN42 357 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-203ENST00000394269 P3H3Q8IVL6 736 aa16.98■□□□□ 0.31
TCOF1-203ENST00000394269 FGD5Q6ZNL6 1462 aa16.93■□□□□ 0.3
TCOF1-203ENST00000394269 KIF21BO75037 1637 aa16.93■□□□□ 0.3
TCOF1-203ENST00000394269 BIVM-ERCC5R4GMW8 1640 aa16.93■□□□□ 0.3
TCOF1-203ENST00000394269 IGF1RP08069 1367 aa16.91■□□□□ 0.3
TCOF1-203ENST00000394269 RAD54L2Q9Y4B4 1467 aa16.9■□□□□ 0.3
TCOF1-203ENST00000394269 PRXQ9BXM0 1461 aa16.9■□□□□ 0.3
TCOF1-203ENST00000394269 CARMIL1Q5VZK9 1371 aa16.88■□□□□ 0.29
TCOF1-203ENST00000394269 VPS8Q8N3P4 1428 aa16.88■□□□□ 0.29
TCOF1-203ENST00000394269 KANK4Q5T7N3 995 aaPredicted RBP16.84■□□□□ 0.29
TCOF1-203ENST00000394269 ITGAEP38570 1179 aa16.84■□□□□ 0.29
TCOF1-203ENST00000394269 TDRD9Q8NDG6 1382 aaKnown RBP16.84■□□□□ 0.29
TCOF1-203ENST00000394269 TOPBP1Q92547 1522 aa16.77■□□□□ 0.28
TCOF1-203ENST00000394269 POLA1P09884 1462 aaPredicted RBP16.77■□□□□ 0.27
TCOF1-203ENST00000394269 PDS5BQ9NTI5 1447 aa16.76■□□□□ 0.27
TCOF1-203ENST00000394269 ARAP1Q96P48 1450 aa16.76■□□□□ 0.27
TCOF1-203ENST00000394269 ERICH3Q5RHP9 1530 aa16.75■□□□□ 0.27
TCOF1-203ENST00000394269 URB2Q14146 1524 aaKnown RBP16.7■□□□□ 0.26
TCOF1-203ENST00000394269 ARHGAP35Q9NRY4 1499 aa16.69■□□□□ 0.26
TCOF1-203ENST00000394269 DNMBPQ6XZF7 1577 aa16.69■□□□□ 0.26
TCOF1-203ENST00000394269 PRDM2Q13029 1718 aa16.67■□□□□ 0.26
TCOF1-203ENST00000394269 LAMC3Q9Y6N6 1575 aa16.65■□□□□ 0.26
TCOF1-203ENST00000394269 FBLN2P98095 1184 aa16.63■□□□□ 0.25
TCOF1-203ENST00000394269 ARID3CA6NKF2 412 aa16.63■□□□□ 0.25
TCOF1-203ENST00000394269 ABCA10Q8WWZ4 1543 aa16.62■□□□□ 0.25
TCOF1-203ENST00000394269 FAM50AQ14320 339 aaKnown RBP16.62■□□□□ 0.25
TCOF1-203ENST00000394269 FHOD3Q2V2M9 1422 aa16.6■□□□□ 0.25
TCOF1-203ENST00000394269 AQRO60306 1485 aaKnown RBP eCLIP16.58■□□□□ 0.252e-7■■■■■ 42.7
TCOF1-203ENST00000394269 GAPVD1Q14C86 1478 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms