RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 FKBP5Q13451 457 aaPredicted RBP9.11□□□□□ -0.95
VPS13A-202ENST00000357409 EXOC6Q8TAG9 804 aa9.11□□□□□ -0.95
VPS13A-202ENST00000357409 ZC3H6P61129 1189 aaKnown RBP9.11□□□□□ -0.95
VPS13A-202ENST00000357409 SF3B2Q13435 895 aaKnown RBP9.11□□□□□ -0.95
VPS13A-202ENST00000357409 CALD1Q05682 793 aaKnown RBP9.11□□□□□ -0.95
VPS13A-202ENST00000357409 CCAR1Q8IX12 1150 aaKnown RBP9.11□□□□□ -0.95
VPS13A-202ENST00000357409 RWDD1Q9H446 243 aaPredicted RBP9.1□□□□□ -0.95
VPS13A-202ENST00000357409 SOGA1O94964 1423 aa9.1□□□□□ -0.95
VPS13A-202ENST00000357409 MS4A1P11836 297 aa9.1□□□□□ -0.95
VPS13A-202ENST00000357409 CEBPZQ03701 1054 aaKnown RBP9.1□□□□□ -0.95
VPS13A-202ENST00000357409 RIPK4P57078 832 aa9.1□□□□□ -0.95
VPS13A-202ENST00000357409 TMEM132AQ24JP5 1023 aa9.1□□□□□ -0.95
VPS13A-202ENST00000357409 NRDCO43847 1150 aa9.1□□□□□ -0.95
VPS13A-202ENST00000357409 SIL1Q9H173 461 aa9.1□□□□□ -0.95
VPS13A-202ENST00000357409 TXNDC2Q86VQ3 553 aa9.1□□□□□ -0.95
VPS13A-202ENST00000357409 CHAF1AQ13111 956 aaPredicted RBP9.09□□□□□ -0.95
VPS13A-202ENST00000357409 PAF1Q8N7H5 531 aa9.09□□□□□ -0.95
VPS13A-202ENST00000357409 NOL10Q9BSC4 688 aaKnown RBP9.09□□□□□ -0.95
VPS13A-202ENST00000357409 ANO2Q9NQ90 1003 aa9.09□□□□□ -0.95
VPS13A-202ENST00000357409 E9PSI1 815 aa9.09□□□□□ -0.95
VPS13A-202ENST00000357409 DNAJC2Q99543 621 aaKnown RBP9.09□□□□□ -0.95
VPS13A-202ENST00000357409 NLRP6P59044 892 aa9.09□□□□□ -0.95
VPS13A-202ENST00000357409 TERF2IPQ9NYB0 399 aa9.09□□□□□ -0.95
VPS13A-202ENST00000357409 TSPYL4Q9UJ04 414 aa9.09□□□□□ -0.95
VPS13A-202ENST00000357409 CARMIL1Q5VZK9 1371 aa9.09□□□□□ -0.95
VPS13A-202ENST00000357409 LNPKQ9C0E8 428 aa9.09□□□□□ -0.95
VPS13A-202ENST00000357409 ZSCAN29Q8IWY8 852 aaPredicted RBP9.08□□□□□ -0.96
VPS13A-202ENST00000357409 CUX2O14529 1486 aa9.08□□□□□ -0.96
VPS13A-202ENST00000357409 ABTB2Q8N961 1025 aa9.08□□□□□ -0.96
VPS13A-202ENST00000357409 TTC16Q8NEE8 873 aa9.08□□□□□ -0.96
VPS13A-202ENST00000357409 GPATCH3Q96I76 525 aa9.08□□□□□ -0.96
VPS13A-202ENST00000357409 RAPGEF4Q8WZA2 1011 aa9.08□□□□□ -0.96
VPS13A-202ENST00000357409 SYNE3Q6ZMZ3 975 aa9.07□□□□□ -0.96
VPS13A-202ENST00000357409 PLCD3Q8N3E9 789 aa9.07□□□□□ -0.96
VPS13A-202ENST00000357409 PPM1FP49593 454 aaPredicted RBP9.07□□□□□ -0.96
VPS13A-202ENST00000357409 BRPF1P55201 1214 aaPredicted RBP9.06□□□□□ -0.96
VPS13A-202ENST00000357409 ZNF644Q9H582 1327 aaPredicted RBP9.06□□□□□ -0.96
VPS13A-202ENST00000357409 ZHX3Q9H4I2 956 aa9.06□□□□□ -0.96
VPS13A-202ENST00000357409 KIF16BQ96L93 1317 aa9.06□□□□□ -0.96
VPS13A-202ENST00000357409 KTN1Q86UP2 1357 aaKnown RBP9.06□□□□□ -0.96
VPS13A-202ENST00000357409 NAP1L1P55209 391 aaKnown RBP9.06□□□□□ -0.96
VPS13A-202ENST00000357409 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.06□□□□□ -0.963e-8■■■■■ 129
VPS13A-202ENST00000357409 IFIT2P09913 472 aaKnown RBP9.06□□□□□ -0.96
VPS13A-202ENST00000357409 CENPJQ9HC77 1338 aaPredicted RBP9.06□□□□□ -0.96
VPS13A-202ENST00000357409 STK3Q13188 491 aa9.06□□□□□ -0.96
VPS13A-202ENST00000357409 CHMP4BQ9H444 224 aaKnown RBP9.06□□□□□ -0.96
VPS13A-202ENST00000357409 PROSER2Q86WR7 435 aaPredicted RBP9.06□□□□□ -0.96
VPS13A-202ENST00000357409 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.05□□□□□ -0.96
VPS13A-202ENST00000357409 WRNQ14191 1432 aaPredicted RBP eCLIP9.05□□□□□ -0.96
VPS13A-202ENST00000357409 PODXL2Q9NZ53 605 aa9.05□□□□□ -0.96
VPS13A-202ENST00000357409 MIS18AQ9NYP9 233 aa9.05□□□□□ -0.96
VPS13A-202ENST00000357409 CCDC43Q96MW1 224 aaKnown RBP9.05□□□□□ -0.96
VPS13A-202ENST00000357409 VPS37CA5D8V6 355 aaPredicted RBP9.05□□□□□ -0.96
VPS13A-202ENST00000357409 TIMELESSQ9UNS1 1208 aa9.05□□□□□ -0.96
VPS13A-202ENST00000357409 TPM4P67936 248 aa9.05□□□□□ -0.96
VPS13A-202ENST00000357409 TOM1L2Q6ZVM7 507 aa9.05□□□□□ -0.96
VPS13A-202ENST00000357409 PTMSP20962 102 aa9.04□□□□□ -0.96
VPS13A-202ENST00000357409 NEXNQ0ZGT2 675 aa9.04□□□□□ -0.96
VPS13A-202ENST00000357409 DDX49Q9Y6V7 483 aaKnown RBP9.04□□□□□ -0.96
VPS13A-202ENST00000357409 PHF14O94880 888 aa9.04□□□□□ -0.96
VPS13A-202ENST00000357409 AMOTL1Q8IY63 956 aa9.03□□□□□ -0.96
VPS13A-202ENST00000357409 ZBTB9Q96C00 473 aa9.03□□□□□ -0.96
VPS13A-202ENST00000357409 FMNL2Q96PY5 1086 aa9.03□□□□□ -0.96
VPS13A-202ENST00000357409 PTCD1O75127 700 aaKnown RBP9.03□□□□□ -0.96
VPS13A-202ENST00000357409 JARID2Q92833 1246 aaPredicted RBP9.03□□□□□ -0.96
VPS13A-202ENST00000357409 WDR78Q5VTH9 848 aa9.03□□□□□ -0.96
VPS13A-202ENST00000357409 DIAPH3Q9NSV4 1193 aa9.02□□□□□ -0.97
VPS13A-202ENST00000357409 TRIM29Q14134 588 aa9.02□□□□□ -0.97
VPS13A-202ENST00000357409 USHBP1Q8N6Y0 703 aa9.02□□□□□ -0.97
VPS13A-202ENST00000357409 CNNM1Q9NRU3 951 aa9.02□□□□□ -0.97
VPS13A-202ENST00000357409 KIF27Q86VH2 1401 aa9.02□□□□□ -0.97
VPS13A-202ENST00000357409 BECN2A8MW95 431 aa9.02□□□□□ -0.97
VPS13A-202ENST00000357409 DIAPH1O60610 1272 aaKnown RBP9.02□□□□□ -0.97
VPS13A-202ENST00000357409 G3BP1Q13283 466 aaKnown RBP eCLIP9.01□□□□□ -0.97
VPS13A-202ENST00000357409 AFAP1Q8N556 730 aa9.01□□□□□ -0.97
VPS13A-202ENST00000357409 ERICH2A1L162 156 aa9.01□□□□□ -0.97
VPS13A-202ENST00000357409 HMMRO75330 724 aa9.01□□□□□ -0.97
VPS13A-202ENST00000357409 BICD2Q8TD16 824 aa9.01□□□□□ -0.97
VPS13A-202ENST00000357409 LARP6Q9BRS8 491 aaKnown RBP9.01□□□□□ -0.97
VPS13A-202ENST00000357409 GOLGA3Q08378 1498 aa9.01□□□□□ -0.97
VPS13A-202ENST00000357409 OSCARQ8IYS5 282 aa9.01□□□□□ -0.97
VPS13A-202ENST00000357409 GBP4Q96PP9 640 aa9.01□□□□□ -0.97
VPS13A-202ENST00000357409 PANK1Q8TE04 598 aa9.01□□□□□ -0.97
VPS13A-202ENST00000357409 GOLGA6L19H0YKK7 550 aa9.01□□□□□ -0.97
VPS13A-202ENST00000357409 PPFIA3O75145 1194 aa9.01□□□□□ -0.97
VPS13A-202ENST00000357409 CEBPAP49715 358 aaPredicted RBP9.01□□□□□ -0.97
VPS13A-202ENST00000357409 CPLX1O14810 134 aa9.01□□□□□ -0.97
VPS13A-202ENST00000357409 TPM3P06753 285 aa9□□□□□ -0.97
VPS13A-202ENST00000357409 CDCA7LQ96GN5 454 aa9□□□□□ -0.97
VPS13A-202ENST00000357409 TNNT3P45378 269 aaPredicted RBP9□□□□□ -0.97
VPS13A-202ENST00000357409 RNF214Q8ND24 703 aa9□□□□□ -0.97
VPS13A-202ENST00000357409 PDILTQ8N807 584 aa9□□□□□ -0.97
VPS13A-202ENST00000357409 RRS1Q15050 365 aaKnown RBP9□□□□□ -0.97
VPS13A-202ENST00000357409 TRDNQ13061 729 aa8.99□□□□□ -0.97
VPS13A-202ENST00000357409 USP5P45974 858 aa8.99□□□□□ -0.97
VPS13A-202ENST00000357409 SKAP1Q86WV1 359 aa8.99□□□□□ -0.97
VPS13A-202ENST00000357409 GOLGA6L3A6NEY3 463 aa8.99□□□□□ -0.97
VPS13A-202ENST00000357409 DCTN1Q14203 1278 aa8.99□□□□□ -0.97
VPS13A-202ENST00000357409 CCDC82Q8N4S0 544 aa8.99□□□□□ -0.97
VPS13A-202ENST00000357409 FKBP4Q02790 459 aaKnown RBP eCLIP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms