RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 ABCC1P33527 1531 aa8.75□□□□□ -1.01
ZNF540-201ENST00000316433 HNRNPUQ00839 825 aaKnown RBP eCLIP8.75□□□□□ -1.01
ZNF540-201ENST00000316433 NPM2Q86SE8 214 aaKnown RBP8.75□□□□□ -1.01
ZNF540-201ENST00000316433 KIF7Q2M1P5 1343 aa8.75□□□□□ -1.01
ZNF540-201ENST00000316433 ABCA9Q8IUA7 1624 aa8.74□□□□□ -1.01
ZNF540-201ENST00000316433 PDE3BQ13370 1112 aa8.74□□□□□ -1.01
ZNF540-201ENST00000316433 SETBP1Q9Y6X0 1596 aa8.74□□□□□ -1.01
ZNF540-201ENST00000316433 CLCN1P35523 988 aa8.73□□□□□ -1.01
ZNF540-201ENST00000316433 USP47Q96K76 1375 aa8.73□□□□□ -1.01
ZNF540-201ENST00000316433 MYOM2P54296 1465 aa8.73□□□□□ -1.01
ZNF540-201ENST00000316433 PTPRTO14522 1441 aa8.73□□□□□ -1.01
ZNF540-201ENST00000316433 NRXN1Q9ULB1 1477 aa8.72□□□□□ -1.01
ZNF540-201ENST00000316433 RALBP1Q15311 655 aa8.72□□□□□ -1.01
ZNF540-201ENST00000316433 L3MBTL2Q969R5 705 aa8.72□□□□□ -1.01
ZNF540-201ENST00000316433 BRD2P25440 801 aaKnown RBP8.72□□□□□ -1.01
ZNF540-201ENST00000316433 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.71□□□□□ -1.01
ZNF540-201ENST00000316433 CNGB1Q14028 1251 aaPredicted RBP8.71□□□□□ -1.01
ZNF540-201ENST00000316433 TAOK2Q9UL54 1235 aa8.71□□□□□ -1.01
ZNF540-201ENST00000316433 PRG4Q92954 1404 aaPredicted RBP8.7□□□□□ -1.02
ZNF540-201ENST00000316433 NUDCQ9Y266 331 aa8.7□□□□□ -1.02
ZNF540-201ENST00000316433 CHD1O14646 1710 aa8.7□□□□□ -1.02
ZNF540-201ENST00000316433 PLB1Q6P1J6 1458 aa8.7□□□□□ -1.02
ZNF540-201ENST00000316433 PLA2R1Q13018 1463 aa8.69□□□□□ -1.02
ZNF540-201ENST00000316433 CFAP74Q9C0B2 1584 aa8.69□□□□□ -1.02
ZNF540-201ENST00000316433 A2MP01023 1474 aa8.69□□□□□ -1.02
ZNF540-201ENST00000316433 NBPF8Q3BBV2 869 aa8.69□□□□□ -1.02
ZNF540-201ENST00000316433 PIK3C2GO75747 1445 aa8.68□□□□□ -1.02
ZNF540-201ENST00000316433 KDM5AP29375 1690 aaKnown RBP8.68□□□□□ -1.02
ZNF540-201ENST00000316433 MS4A1P11836 297 aa8.68□□□□□ -1.02
ZNF540-201ENST00000316433 DHX37Q8IY37 1157 aaKnown RBP8.68□□□□□ -1.02
ZNF540-201ENST00000316433 ZFYVE16Q7Z3T8 1539 aa8.68□□□□□ -1.02
ZNF540-201ENST00000316433 TPM2P07951 284 aa8.68□□□□□ -1.02
ZNF540-201ENST00000316433 DDRGK1Q96HY6 314 aa8.68□□□□□ -1.02
ZNF540-201ENST00000316433 NCLP19338 710 aaKnown RBP8.67□□□□□ -1.02
ZNF540-201ENST00000316433 MROH1Q8NDA8 1641 aa8.67□□□□□ -1.02
ZNF540-201ENST00000316433 SBNO2Q9Y2G9 1366 aa8.67□□□□□ -1.02
ZNF540-201ENST00000316433 ZCCHC11Q5TAX3 1644 aaKnown RBP8.67□□□□□ -1.02
ZNF540-201ENST00000316433 MYBBP1AQ9BQG0 1328 aaKnown RBP8.67□□□□□ -1.02
ZNF540-201ENST00000316433 NGEFQ8N5V2 710 aa8.67□□□□□ -1.02
ZNF540-201ENST00000316433 CHMP4AQ9BY43 222 aa8.66□□□□□ -1.02
ZNF540-201ENST00000316433 L1TD1Q5T7N2 865 aaKnown RBP8.66□□□□□ -1.02
ZNF540-201ENST00000316433 PNISRQ8TF01 805 aaKnown RBP8.66□□□□□ -1.02
ZNF540-201ENST00000316433 SMAP1Q8IYB5 467 aaPredicted RBP8.65□□□□□ -1.02
ZNF540-201ENST00000316433 EIF3AQ14152 1382 aaKnown RBP8.65□□□□□ -1.02
ZNF540-201ENST00000316433 ABCA6Q8N139 1617 aa8.65□□□□□ -1.02
ZNF540-201ENST00000316433 MAP3K4Q9Y6R4 1608 aa8.65□□□□□ -1.02
ZNF540-201ENST00000316433 NINLQ9Y2I6 1382 aa8.65□□□□□ -1.03
ZNF540-201ENST00000316433 FANCAO15360 1455 aa8.64□□□□□ -1.03
ZNF540-201ENST00000316433 PIK3C2BO00750 1634 aa8.64□□□□□ -1.03
ZNF540-201ENST00000316433 SYCP2Q9BX26 1530 aa8.64□□□□□ -1.03
ZNF540-201ENST00000316433 ZFP91Q96JP5 570 aaPredicted RBP8.64□□□□□ -1.03
ZNF540-201ENST00000316433 FTSJ3Q8IY81 847 aaKnown RBP8.64□□□□□ -1.03
ZNF540-201ENST00000316433 ANKRD26Q9UPS8 1709 aa8.63□□□□□ -1.03
ZNF540-201ENST00000316433 PDE4AP27815 886 aa8.63□□□□□ -1.03
ZNF540-201ENST00000316433 TCERG1O14776 1098 aaKnown RBP8.62□□□□□ -1.03
ZNF540-201ENST00000316433 FRAT2O75474 233 aaPredicted RBP8.62□□□□□ -1.03
ZNF540-201ENST00000316433 ZHX1Q9UKY1 873 aaPredicted RBP8.62□□□□□ -1.03
ZNF540-201ENST00000316433 ADGRL1O94910 1474 aa8.62□□□□□ -1.03
ZNF540-201ENST00000316433 PLCH2O75038 1416 aa8.62□□□□□ -1.03
ZNF540-201ENST00000316433 CLTCL1P53675 1640 aa8.62□□□□□ -1.03
ZNF540-201ENST00000316433 BACH2Q9BYV9 841 aa8.62□□□□□ -1.03
ZNF540-201ENST00000316433 KIF1BO60333 1816 aa8.62□□□□□ -1.03
ZNF540-201ENST00000316433 CLTCQ00610 1675 aaKnown RBP8.62□□□□□ -1.03
ZNF540-201ENST00000316433 FOXD1Q16676 465 aa8.62□□□□□ -1.03
ZNF540-201ENST00000316433 SHPRHQ149N8 1683 aa8.61□□□□□ -1.03
ZNF540-201ENST00000316433 PPLO60437 1756 aa8.61□□□□□ -1.03
ZNF540-201ENST00000316433 TEX2Q8IWB9 1127 aa8.61□□□□□ -1.03
ZNF540-201ENST00000316433 EFCAB6Q5THR3 1501 aa8.61□□□□□ -1.03
ZNF540-201ENST00000316433 ASXL1Q8IXJ9 1541 aa8.61□□□□□ -1.03
ZNF540-201ENST00000316433 ADGRB3O60242 1522 aa8.6□□□□□ -1.03
ZNF540-201ENST00000316433 TMEM51Q9NW97 253 aa8.6□□□□□ -1.03
ZNF540-201ENST00000316433 P3H3Q8IVL6 736 aa8.6□□□□□ -1.03
ZNF540-201ENST00000316433 ZNF830Q96NB3 372 aaPredicted RBP8.6□□□□□ -1.03
ZNF540-201ENST00000316433 MAP7D2Q96T17 732 aa8.6□□□□□ -1.03
ZNF540-201ENST00000316433 ADGRB2O60241 1585 aa8.6□□□□□ -1.03
ZNF540-201ENST00000316433 ZNF518AQ6AHZ1 1483 aa8.59□□□□□ -1.03
ZNF540-201ENST00000316433 UTP14CQ5TAP6 766 aaKnown RBP8.59□□□□□ -1.03
ZNF540-201ENST00000316433 SCAF11Q99590 1463 aaKnown RBP8.59□□□□□ -1.03
ZNF540-201ENST00000316433 CHRM1P11229 460 aaPredicted RBP8.59□□□□□ -1.03
ZNF540-201ENST00000316433 PLCD3Q8N3E9 789 aa8.59□□□□□ -1.03
ZNF540-201ENST00000316433 SLC4A1APQ9BWU0 796 aaKnown RBP8.59□□□□□ -1.03
ZNF540-201ENST00000316433 PER1O15534 1290 aaPredicted RBP8.58□□□□□ -1.04
ZNF540-201ENST00000316433 NLRP13Q86W25 1043 aa8.58□□□□□ -1.04
ZNF540-201ENST00000316433 RRP7BPQ9NSQ0 103 aa8.58□□□□□ -1.04
ZNF540-201ENST00000316433 REREQ9P2R6 1566 aa8.58□□□□□ -1.04
ZNF540-201ENST00000316433 NUP155O75694 1391 aa8.58□□□□□ -1.04
ZNF540-201ENST00000316433 CFDP1Q9UEE9 299 aaPredicted RBP8.58□□□□□ -1.04
ZNF540-201ENST00000316433 ZNF521Q96K83 1311 aa8.58□□□□□ -1.04
ZNF540-201ENST00000316433 KANK1Q14678 1352 aa8.58□□□□□ -1.04
ZNF540-201ENST00000316433 UGGT1Q9NYU2 1555 aa8.58□□□□□ -1.04
ZNF540-201ENST00000316433 SAMD1Q6SPF0 538 aaPredicted RBP8.57□□□□□ -1.04
ZNF540-201ENST00000316433 SECISBP2LQ93073 1101 aaKnown RBP8.57□□□□□ -1.04
ZNF540-201ENST00000316433 MRS2Q9HD23 443 aa8.57□□□□□ -1.04
ZNF540-201ENST00000316433 POGKQ9P215 609 aa8.57□□□□□ -1.04
ZNF540-201ENST00000316433 PUS7Q96PZ0 661 aaKnown RBP8.57□□□□□ -1.04
ZNF540-201ENST00000316433 CDC42BPGQ6DT37 1551 aa8.57□□□□□ -1.04
ZNF540-201ENST00000316433 HECW2Q9P2P5 1572 aa8.57□□□□□ -1.04
ZNF540-201ENST00000316433 DMTNQ08495 405 aa8.56□□□□□ -1.04
ZNF540-201ENST00000316433 TPRNQ4KMQ1 711 aa8.56□□□□□ -1.04
ZNF540-201ENST00000316433 PPP4R3BQ5MIZ7 849 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms