RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 TRAPPC8Q9Y2L5 1435 aa10□□□□□ -0.81
DEPDC4-201ENST00000299185 ADGRL1O94910 1474 aa10□□□□□ -0.81
DEPDC4-201ENST00000299185 TCOF1Q13428 1488 aaKnown RBP10□□□□□ -0.81
DEPDC4-201ENST00000299185 COL17A1Q9UMD9 1497 aaPredicted RBP10□□□□□ -0.81
DEPDC4-201ENST00000299185 CFDP1Q9UEE9 299 aaPredicted RBP10□□□□□ -0.81
DEPDC4-201ENST00000299185 ARAP3Q8WWN8 1544 aa10□□□□□ -0.81
DEPDC4-201ENST00000299185 AKNAQ7Z591 1439 aa9.99□□□□□ -0.81
DEPDC4-201ENST00000299185 RRBP1Q9P2E9 1410 aaKnown RBP9.99□□□□□ -0.81
DEPDC4-201ENST00000299185 LMTK3Q96Q04 1460 aa9.99□□□□□ -0.81
DEPDC4-201ENST00000299185 FAM50AQ14320 339 aaKnown RBP9.99□□□□□ -0.81
DEPDC4-201ENST00000299185 ANKRD13DQ6ZTN6 518 aa9.99□□□□□ -0.81
DEPDC4-201ENST00000299185 CFAP74Q9C0B2 1584 aa9.99□□□□□ -0.81
DEPDC4-201ENST00000299185 ITGAEP38570 1179 aa9.98□□□□□ -0.81
DEPDC4-201ENST00000299185 TEX14Q8IWB6 1497 aa9.98□□□□□ -0.81
DEPDC4-201ENST00000299185 NEO1Q92859 1461 aa9.98□□□□□ -0.81
DEPDC4-201ENST00000299185 CROCC2H7BZ55 1655 aa9.97□□□□□ -0.81
DEPDC4-201ENST00000299185 ARSIQ5FYB1 569 aa9.97□□□□□ -0.81
DEPDC4-201ENST00000299185 MS4A4AQ96JQ5 239 aa9.97□□□□□ -0.81
DEPDC4-201ENST00000299185 PTPRKQ15262 1439 aa9.97□□□□□ -0.81
DEPDC4-201ENST00000299185 POGZQ7Z3K3 1410 aa9.97□□□□□ -0.81
DEPDC4-201ENST00000299185 MIA2Q96PC5 1412 aa9.97□□□□□ -0.81
DEPDC4-201ENST00000299185 SCAPERQ9BY12 1400 aa9.97□□□□□ -0.81
DEPDC4-201ENST00000299185 DNMT1P26358 1616 aaKnown RBP9.96□□□□□ -0.81
DEPDC4-201ENST00000299185 ZNF316A6NFI3 1004 aaPredicted RBP9.96□□□□□ -0.82
DEPDC4-201ENST00000299185 RIOK3O14730 519 aaKnown RBP9.96□□□□□ -0.82
DEPDC4-201ENST00000299185 HNRNPMP52272 730 aaKnown RBP eCLIP9.96□□□□□ -0.82
DEPDC4-201ENST00000299185 MBD5Q9P267 1494 aa9.96□□□□□ -0.82
DEPDC4-201ENST00000299185 KDM6BO15054 1643 aa9.96□□□□□ -0.82
DEPDC4-201ENST00000299185 RICTORQ6R327 1708 aa9.96□□□□□ -0.82
DEPDC4-201ENST00000299185 SOCS7O14512 581 aa9.95□□□□□ -0.82
DEPDC4-201ENST00000299185 EFCAB2Q5VUJ9 269 aa9.95□□□□□ -0.82
DEPDC4-201ENST00000299185 ABCC5O15440 1437 aa9.95□□□□□ -0.82
DEPDC4-201ENST00000299185 DAPK1P53355 1430 aa9.95□□□□□ -0.82
DEPDC4-201ENST00000299185 ARHGEF5Q12774 1597 aa9.94□□□□□ -0.82
DEPDC4-201ENST00000299185 ZFYVE16Q7Z3T8 1539 aa9.94□□□□□ -0.82
DEPDC4-201ENST00000299185 DENND4BO75064 1496 aaPredicted RBP9.94□□□□□ -0.82
DEPDC4-201ENST00000299185 CCDC141Q6ZP82 1450 aa9.94□□□□□ -0.82
DEPDC4-201ENST00000299185 RAPGEF3O95398 923 aa9.94□□□□□ -0.82
DEPDC4-201ENST00000299185 LSM11P83369 360 aaKnown RBP eCLIP9.94□□□□□ -0.82
DEPDC4-201ENST00000299185 PHF8Q9UPP1 1060 aa9.94□□□□□ -0.82
DEPDC4-201ENST00000299185 INO80Q9ULG1 1556 aaPredicted RBP9.93□□□□□ -0.82
DEPDC4-201ENST00000299185 VGFO15240 615 aaPredicted RBP9.93□□□□□ -0.82
DEPDC4-201ENST00000299185 ABCA6Q8N139 1617 aa9.93□□□□□ -0.82
DEPDC4-201ENST00000299185 KDM5CP41229 1560 aa9.92□□□□□ -0.82
DEPDC4-201ENST00000299185 PLEKHH2Q8IVE3 1493 aa9.92□□□□□ -0.82
DEPDC4-201ENST00000299185 YEATS2Q9ULM3 1422 aa9.92□□□□□ -0.82
DEPDC4-201ENST00000299185 PBX2P40425 430 aa9.92□□□□□ -0.82
DEPDC4-201ENST00000299185 AFAP1Q8N556 730 aa9.92□□□□□ -0.82
DEPDC4-201ENST00000299185 CHIC2Q9UKJ5 165 aa9.92□□□□□ -0.82
DEPDC4-201ENST00000299185 HECW2Q9P2P5 1572 aa9.92□□□□□ -0.82
DEPDC4-201ENST00000299185 C9orf84Q5VXU9 1444 aa9.91□□□□□ -0.82
DEPDC4-201ENST00000299185 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.91□□□□□ -0.82
DEPDC4-201ENST00000299185 KHSRPQ92945 711 aaKnown RBP eCLIP9.91□□□□□ -0.82
DEPDC4-201ENST00000299185 ZFP91Q96JP5 570 aaPredicted RBP9.91□□□□□ -0.82
DEPDC4-201ENST00000299185 ATP7AQ04656 1500 aa9.91□□□□□ -0.82
DEPDC4-201ENST00000299185 ZMYM4Q5VZL5 1548 aa9.91□□□□□ -0.82
DEPDC4-201ENST00000299185 ARHGEF40Q8TER5 1519 aa9.91□□□□□ -0.82
DEPDC4-201ENST00000299185 KIAA1107Q9UPP5 1409 aa9.9□□□□□ -0.82
DEPDC4-201ENST00000299185 SIGLEC1Q9BZZ2 1709 aa9.9□□□□□ -0.82
DEPDC4-201ENST00000299185 ADGBQ8N7X0 1667 aa9.9□□□□□ -0.82
DEPDC4-201ENST00000299185 DIP2CQ9Y2E4 1556 aa9.9□□□□□ -0.82
DEPDC4-201ENST00000299185 NLRP6P59044 892 aa9.9□□□□□ -0.82
DEPDC4-201ENST00000299185 RNF25Q96BH1 459 aaPredicted RBP9.9□□□□□ -0.82
DEPDC4-201ENST00000299185 KIDINS220Q9ULH0 1771 aa9.9□□□□□ -0.82
DEPDC4-201ENST00000299185 ZNF518AQ6AHZ1 1483 aa9.9□□□□□ -0.83
DEPDC4-201ENST00000299185 SHANK2Q9UPX8 1470 aa9.9□□□□□ -0.83
DEPDC4-201ENST00000299185 MAST1Q9Y2H9 1570 aa9.88□□□□□ -0.83
DEPDC4-201ENST00000299185 RRP7BPQ9NSQ0 103 aa9.87□□□□□ -0.83
DEPDC4-201ENST00000299185 TAOK2Q9UL54 1235 aa9.87□□□□□ -0.83
DEPDC4-201ENST00000299185 SPAG9O60271 1321 aaKnown RBP9.86□□□□□ -0.83
DEPDC4-201ENST00000299185 PLXNC1O60486 1568 aa9.86□□□□□ -0.83
DEPDC4-201ENST00000299185 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.86□□□□□ -0.83
DEPDC4-201ENST00000299185 ADGRL2O95490 1459 aa9.85□□□□□ -0.83
DEPDC4-201ENST00000299185 HCSTQ9UBK5 93 aa9.85□□□□□ -0.83
DEPDC4-201ENST00000299185 GCC2Q8IWJ2 1684 aa9.85□□□□□ -0.83
DEPDC4-201ENST00000299185 KIF15Q9NS87 1388 aa9.85□□□□□ -0.83
DEPDC4-201ENST00000299185 PCGF6Q9BYE7 350 aa9.84□□□□□ -0.83
DEPDC4-201ENST00000299185 MLH3Q9UHC1 1453 aa9.84□□□□□ -0.83
DEPDC4-201ENST00000299185 TRIM26Q12899 539 aaPredicted RBP9.83□□□□□ -0.84
DEPDC4-201ENST00000299185 ILDR2Q71H61 639 aa9.83□□□□□ -0.84
DEPDC4-201ENST00000299185 PLA2G2EQ9NZK7 142 aa9.83□□□□□ -0.84
DEPDC4-201ENST00000299185 NAIPQ13075 1403 aa9.82□□□□□ -0.84
DEPDC4-201ENST00000299185 NCOA1Q15788 1441 aa9.82□□□□□ -0.84
DEPDC4-201ENST00000299185 A2MP01023 1474 aa9.81□□□□□ -0.84
DEPDC4-201ENST00000299185 ANKRD30AQ9BXX3 1397 aa9.8□□□□□ -0.84
DEPDC4-201ENST00000299185 SLC34A2O95436 690 aa9.8□□□□□ -0.84
DEPDC4-201ENST00000299185 NUDT7P0C024 238 aa9.8□□□□□ -0.84
DEPDC4-201ENST00000299185 FBXO22Q8NEZ5 403 aa9.8□□□□□ -0.84
DEPDC4-201ENST00000299185 MROH1Q8NDA8 1641 aa9.8□□□□□ -0.84
DEPDC4-201ENST00000299185 HFM1A2PYH4 1435 aa9.8□□□□□ -0.84
DEPDC4-201ENST00000299185 RTEL1-TNFRSF6BF6WH68 1400 aa9.8□□□□□ -0.84
DEPDC4-201ENST00000299185 ROCK1Q13464 1354 aa9.79□□□□□ -0.84
DEPDC4-201ENST00000299185 DUOX2Q9NRD8 1548 aa9.79□□□□□ -0.84
DEPDC4-201ENST00000299185 KIF3CO14782 793 aa9.79□□□□□ -0.84
DEPDC4-201ENST00000299185 TSPY4P0CV99 314 aa9.79□□□□□ -0.84
DEPDC4-201ENST00000299185 TSPY10P0CW01 314 aa9.79□□□□□ -0.84
DEPDC4-201ENST00000299185 ATP10AO60312 1499 aa9.79□□□□□ -0.84
DEPDC4-201ENST00000299185 DISP3Q9P2K9 1392 aa9.78□□□□□ -0.84
DEPDC4-201ENST00000299185 PSDA5PKW4 1024 aaPredicted RBP9.78□□□□□ -0.84
DEPDC4-201ENST00000299185 MAGI2Q86UL8 1455 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms