RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 SLC52A1Q9NWF4 448 aa13.87□□□□□ -0.19
HMGN1-201ENST00000288344 MED14O60244 1454 aa13.87□□□□□ -0.19
HMGN1-201ENST00000288344 KDM5AP29375 1690 aaKnown RBP13.86□□□□□ -0.19
HMGN1-201ENST00000288344 NEURL4Q96JN8 1562 aa13.86□□□□□ -0.19
HMGN1-201ENST00000288344 POLA2Q14181 598 aa13.86□□□□□ -0.19
HMGN1-201ENST00000288344 PIK3C2BO00750 1634 aa13.85□□□□□ -0.19
HMGN1-201ENST00000288344 SLIT1O75093 1534 aa13.85□□□□□ -0.19
HMGN1-201ENST00000288344 LTKP29376 864 aa13.85□□□□□ -0.19
HMGN1-201ENST00000288344 LTBP4Q8N2S1 1624 aa13.82□□□□□ -0.2
HMGN1-201ENST00000288344 ANKLE2Q86XL3 938 aa13.82□□□□□ -0.2
HMGN1-201ENST00000288344 TMEM2Q9UHN6 1383 aa13.81□□□□□ -0.2
HMGN1-201ENST00000288344 TMEM131LA2VDJ0 1609 aa13.8□□□□□ -0.2
HMGN1-201ENST00000288344 HRCP23327 699 aa13.8□□□□□ -0.2
HMGN1-201ENST00000288344 SETD5Q9C0A6 1442 aa13.79□□□□□ -0.2
HMGN1-201ENST00000288344 ZFYVE9O95405 1425 aa13.78□□□□□ -0.2
HMGN1-201ENST00000288344 POLR1AO95602 1720 aaPredicted RBP13.78□□□□□ -0.2
HMGN1-201ENST00000288344 ADGRB3O60242 1522 aa13.77□□□□□ -0.2
HMGN1-201ENST00000288344 TXNDC2Q86VQ3 553 aa13.76□□□□□ -0.21
HMGN1-201ENST00000288344 MPHOSPH9Q99550 1183 aa13.76□□□□□ -0.21
HMGN1-201ENST00000288344 NPHP4O75161 1426 aaPredicted RBP13.76□□□□□ -0.21
HMGN1-201ENST00000288344 SCAF11Q99590 1463 aaKnown RBP13.76□□□□□ -0.21
HMGN1-201ENST00000288344 MYO5BQ9ULV0 1848 aa13.75□□□□□ -0.21
HMGN1-201ENST00000288344 CERKQ8TCT0 537 aa13.75□□□□□ -0.21
HMGN1-201ENST00000288344 RAB3GAP2Q9H2M9 1393 aa13.75□□□□□ -0.21
HMGN1-201ENST00000288344 SPHKAPQ2M3C7 1700 aa13.75□□□□□ -0.21
HMGN1-201ENST00000288344 ZNF335Q9H4Z2 1342 aaPredicted RBP13.74□□□□□ -0.21
HMGN1-201ENST00000288344 ACIN1Q9UKV3 1341 aaKnown RBP13.74□□□□□ -0.21
HMGN1-201ENST00000288344 TRPM2O94759 1503 aa13.73□□□□□ -0.21
HMGN1-201ENST00000288344 TRIM52Q96A61 297 aa13.73□□□□□ -0.21
HMGN1-201ENST00000288344 IQGAP1P46940 1657 aa13.72□□□□□ -0.21
HMGN1-201ENST00000288344 CLTCL1P53675 1640 aa13.71□□□□□ -0.21
HMGN1-201ENST00000288344 STRCP1A6NGW2 1772 aa13.71□□□□□ -0.22
HMGN1-201ENST00000288344 ILDR1Q86SU0 546 aaPredicted RBP13.7□□□□□ -0.22
HMGN1-201ENST00000288344 RIMS2Q9UQ26 1411 aa13.69□□□□□ -0.22
HMGN1-201ENST00000288344 EID1Q9Y6B2 187 aa13.68□□□□□ -0.22
HMGN1-201ENST00000288344 PLEKHG1Q9ULL1 1385 aa13.68□□□□□ -0.22
HMGN1-201ENST00000288344 IQSEC2Q5JU85 1478 aa13.67□□□□□ -0.22
HMGN1-201ENST00000288344 FBXO41Q8TF61 875 aa13.67□□□□□ -0.22
HMGN1-201ENST00000288344 STAG3Q9UJ98 1225 aa13.67□□□□□ -0.22
HMGN1-201ENST00000288344 ADAMTS13Q76LX8 1427 aa13.67□□□□□ -0.22
HMGN1-201ENST00000288344 RTN4Q9NQC3 1192 aaKnown RBP13.66□□□□□ -0.22
HMGN1-201ENST00000288344 ZBTB12Q9Y330 459 aaPredicted RBP13.66□□□□□ -0.22
HMGN1-201ENST00000288344 SPATA31E1Q6ZUB1 1445 aa13.66□□□□□ -0.22
HMGN1-201ENST00000288344 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.65□□□□□ -0.22
HMGN1-201ENST00000288344 TBX22Q9Y458 520 aa13.65□□□□□ -0.22
HMGN1-201ENST00000288344 ANKRD30BQ9BXX2 1392 aa13.65□□□□□ -0.22
HMGN1-201ENST00000288344 NEXMIFQ5QGS0 1516 aa13.64□□□□□ -0.23
HMGN1-201ENST00000288344 CPS1P31327 1500 aa13.64□□□□□ -0.23
HMGN1-201ENST00000288344 HDGFP51858 240 aaKnown RBP13.64□□□□□ -0.23
HMGN1-201ENST00000288344 SLC26A8Q96RN1 970 aa13.64□□□□□ -0.23
HMGN1-201ENST00000288344 LRRC7Q96NW7 1537 aa13.63□□□□□ -0.23
HMGN1-201ENST00000288344 NRXN3Q9Y4C0 1643 aa13.63□□□□□ -0.23
HMGN1-201ENST00000288344 CHGAP10645 457 aaKnown RBP13.63□□□□□ -0.23
HMGN1-201ENST00000288344 KCNA6P17658 529 aa13.63□□□□□ -0.23
HMGN1-201ENST00000288344 ALKQ9UM73 1620 aa13.62□□□□□ -0.23
HMGN1-201ENST00000288344 KIF1BO60333 1816 aa13.62□□□□□ -0.23
HMGN1-201ENST00000288344 NUTM2DQ5VT03 806 aaPredicted RBP13.62□□□□□ -0.23
HMGN1-201ENST00000288344 RPGRIP1LQ68CZ1 1315 aa13.61□□□□□ -0.23
HMGN1-201ENST00000288344 SETBP1Q9Y6X0 1596 aa13.61□□□□□ -0.23
HMGN1-201ENST00000288344 CHD2O14647 1828 aaKnown RBP13.61□□□□□ -0.23
HMGN1-201ENST00000288344 XIRP1Q702N8 1843 aaKnown RBP13.6□□□□□ -0.23
HMGN1-201ENST00000288344 PTPRUQ92729 1446 aa13.59□□□□□ -0.23
HMGN1-201ENST00000288344 NWD1Q149M9 1564 aa13.59□□□□□ -0.23
HMGN1-201ENST00000288344 PIK3R4Q99570 1358 aa13.59□□□□□ -0.23
HMGN1-201ENST00000288344 CCDC144AA2RUR9 1427 aa13.58□□□□□ -0.24
HMGN1-201ENST00000288344 MKRN4PQ13434 485 aaPredicted RBP13.58□□□□□ -0.24
HMGN1-201ENST00000288344 PPLO60437 1756 aa13.57□□□□□ -0.24
HMGN1-201ENST00000288344 METP08581 1390 aa13.56□□□□□ -0.24
HMGN1-201ENST00000288344 VGFO15240 615 aaPredicted RBP13.56□□□□□ -0.24
HMGN1-201ENST00000288344 SETD1AO15047 1707 aaKnown RBP13.56□□□□□ -0.24
HMGN1-201ENST00000288344 IFT172Q9UG01 1749 aa13.56□□□□□ -0.24
HMGN1-201ENST00000288344 DIP2AQ14689 1571 aa13.55□□□□□ -0.24
HMGN1-201ENST00000288344 TRIM26Q12899 539 aaPredicted RBP13.55□□□□□ -0.24
HMGN1-201ENST00000288344 ZNF326Q5BKZ1 582 aaKnown RBP13.55□□□□□ -0.24
HMGN1-201ENST00000288344 AMER1Q5JTC6 1135 aaPredicted RBP13.55□□□□□ -0.24
HMGN1-201ENST00000288344 ADGRF5Q8IZF2 1346 aa13.55□□□□□ -0.24
HMGN1-201ENST00000288344 PPP1R15AO75807 674 aaPredicted RBP13.54□□□□□ -0.24
HMGN1-201ENST00000288344 NKTRP30414 1462 aaKnown RBP13.53□□□□□ -0.24
HMGN1-201ENST00000288344 NRXN1Q9ULB1 1477 aa13.53□□□□□ -0.24
HMGN1-201ENST00000288344 TMEM94Q12767 1356 aa13.53□□□□□ -0.24
HMGN1-201ENST00000288344 PRAG1Q86YV5 1406 aa13.53□□□□□ -0.24
HMGN1-201ENST00000288344 RGL3Q3MIN7 710 aa13.52□□□□□ -0.25
HMGN1-201ENST00000288344 AMOTL2Q9Y2J4 779 aa13.52□□□□□ -0.25
HMGN1-201ENST00000288344 DHX57Q6P158 1386 aaKnown RBP13.52□□□□□ -0.25
HMGN1-201ENST00000288344 NCOA3Q9Y6Q9 1424 aa13.52□□□□□ -0.25
HMGN1-201ENST00000288344 XRN1Q8IZH2 1706 aaKnown RBP13.51□□□□□ -0.25
HMGN1-201ENST00000288344 RBM33Q96EV2 1170 aaKnown RBP13.5□□□□□ -0.25
HMGN1-201ENST00000288344 PIK3C2GO75747 1445 aa13.49□□□□□ -0.25
HMGN1-201ENST00000288344 PROSER2Q86WR7 435 aaPredicted RBP13.49□□□□□ -0.25
HMGN1-201ENST00000288344 C14orf93Q9H972 538 aaKnown RBP13.49□□□□□ -0.25
HMGN1-201ENST00000288344 UBAP1LF5GYI3 381 aa13.48□□□□□ -0.25
HMGN1-201ENST00000288344 BCANQ96GW7 911 aa13.48□□□□□ -0.25
HMGN1-201ENST00000288344 MYOM2P54296 1465 aa13.48□□□□□ -0.25
HMGN1-201ENST00000288344 TOM1O60784 492 aa13.47□□□□□ -0.25
HMGN1-201ENST00000288344 RBM42Q9BTD8 480 aaKnown RBP13.47□□□□□ -0.25
HMGN1-201ENST00000288344 STAC3Q96MF2 364 aa13.46□□□□□ -0.25
HMGN1-201ENST00000288344 ASXL1Q8IXJ9 1541 aa13.46□□□□□ -0.25
HMGN1-201ENST00000288344 ROBO2Q9HCK4 1378 aa13.45□□□□□ -0.26
HMGN1-201ENST00000288344 TECPR2O15040 1411 aa13.44□□□□□ -0.26
HMGN1-201ENST00000288344 ABCC11Q96J66 1382 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms