RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX4	YMR067C	YPL229W	Q99395	206 aa		0.9	□□□□□ -2.27
UBX4	YMR067C	DOP1	Q03921	1698 aa		0.9	□□□□□ -2.27
UBX4	YMR067C	USO1	P25386	1790 aa		0.9	□□□□□ -2.27
UBX4	YMR067C	TY1B-DR3	Q99231	1755 aa		0.89	□□□□□ -2.27
UBX4	YMR067C	YER188C-A	P0C0V2	99 aa		0.89	□□□□□ -2.27
UBX4	YMR067C	TFC1	P32367	649 aa		0.89	□□□□□ -2.27
UBX4	YMR067C	RIO2	P40160	425 aa	Known RBP	0.89	□□□□□ -2.27
UBX4	YMR067C	YRB2	P40517	327 aa		0.89	□□□□□ -2.27
UBX4	YMR067C	RPL37A	P49166	88 aa	Known RBP	0.89	□□□□□ -2.27
UBX4	YMR067C	SAY1	P53324	424 aa		0.89	□□□□□ -2.27
UBX4	YMR067C	CUS2	P53830	285 aa	Predicted RBP	0.89	□□□□□ -2.27
UBX4	YMR067C	YNL010W	P53981	241 aa	Known RBP	0.89	□□□□□ -2.27
UBX4	YMR067C	SPG3	Q04398	127 aa	Predicted RBP	0.89	□□□□□ -2.27
UBX4	YMR067C	SLH1	P53327	1967 aa	Known RBP	0.88	□□□□□ -2.27
UBX4	YMR067C	TY1B-JR2	P47100	1755 aa	Known RBP	0.88	□□□□□ -2.27
UBX4	YMR067C	TY1B-ER2	Q03619	1755 aa		0.88	□□□□□ -2.27
UBX4	YMR067C	TY1B-MR1	Q04214	1755 aa		0.88	□□□□□ -2.27
UBX4	YMR067C	TY1B-MR2	Q04670	1755 aa	Known RBP	0.88	□□□□□ -2.27
UBX4	YMR067C	TY1B-LR1	Q12088	1755 aa	Known RBP	0.88	□□□□□ -2.27
UBX4	YMR067C	TY1B-NL1	Q12112	1755 aa		0.88	□□□□□ -2.27
UBX4	YMR067C	TY1B-GR1	Q12141	1755 aa		0.88	□□□□□ -2.27
UBX4	YMR067C	TY1B-BL	Q12490	1755 aa		0.88	□□□□□ -2.27
UBX4	YMR067C	YET1	P35723	206 aa		0.88	□□□□□ -2.27
UBX4	YMR067C	VPS21	P36017	210 aa	Known RBP	0.88	□□□□□ -2.27
UBX4	YMR067C	RIB1	P38066	345 aa		0.88	□□□□□ -2.27
UBX4	YMR067C	YDL180W	Q12301	547 aa		0.88	□□□□□ -2.27
UBX4	YMR067C	SIN3	P22579	1536 aa		0.88	□□□□□ -2.27
UBX4	YMR067C	SKI3	P17883	1432 aa	Known RBP	0.88	□□□□□ -2.27
UBX4	YMR067C	MSB2	P32334	1306 aa		0.88	□□□□□ -2.27
UBX4	YMR067C	SPO14	P36126	1683 aa		0.88	□□□□□ -2.27
UBX4	YMR067C	CHD1	P32657	1468 aa		0.87	□□□□□ -2.27
UBX4	YMR067C	UFD4	P33202	1483 aa		0.87	□□□□□ -2.27
UBX4	YMR067C	RPO21	P04050	1733 aa	Known RBP	0.87	□□□□□ -2.27
UBX4	YMR067C	DRS2	P39524	1355 aa		0.87	□□□□□ -2.27
UBX4	YMR067C	REP2	P03872	296 aa		0.87	□□□□□ -2.27
UBX4	YMR067C	MRPS28	P21771	286 aa		0.87	□□□□□ -2.27
UBX4	YMR067C	MSH5	Q12175	901 aa		0.87	□□□□□ -2.27
UBX4	YMR067C	NUP170	P38181	1502 aa		0.87	□□□□□ -2.27
UBX4	YMR067C	DNF3	Q12674	1656 aa		0.87	□□□□□ -2.27
UBX4	YMR067C	VPS15	P22219	1454 aa		0.86	□□□□□ -2.27
UBX4	YMR067C	YPK9	Q12697	1472 aa		0.86	□□□□□ -2.27
UBX4	YMR067C	PDR15	Q04182	1529 aa	Known RBP	0.86	□□□□□ -2.27
UBX4	YMR067C	UMP1	P38293	148 aa		0.86	□□□□□ -2.27
UBX4	YMR067C	ERJ5	P43613	295 aa	Predicted RBP	0.86	□□□□□ -2.27
UBX4	YMR067C	MCM22	P47167	239 aa		0.86	□□□□□ -2.27
UBX4	YMR067C	YMD8	Q03697	442 aa		0.86	□□□□□ -2.27
UBX4	YMR067C	LSO2	Q3E772	92 aa	Known RBP	0.86	□□□□□ -2.27
UBX4	YMR067C	YNL146C-A	Q3E7Z1	64 aa		0.86	□□□□□ -2.27
UBX4	YMR067C	SCC2	Q04002	1493 aa		0.86	□□□□□ -2.27
UBX4	YMR067C	CHC1	P22137	1653 aa	Known RBP	0.85	□□□□□ -2.27
UBX4	YMR067C	YPR170W-B	P0C5R9	85 aa		0.85	□□□□□ -2.27
UBX4	YMR067C	OM45	P16547	393 aa		0.85	□□□□□ -2.27
UBX4	YMR067C	PEX17	P40155	199 aa		0.85	□□□□□ -2.27
UBX4	YMR067C	HOC1	P47124	396 aa		0.85	□□□□□ -2.27
UBX4	YMR067C	POP3	P53833	195 aa	Predicted RBP	0.85	□□□□□ -2.27
UBX4	YMR067C	NOP13	P53883	403 aa	Known RBP RIP-Chip data	0.85	□□□□□ -2.27	not detected
UBX4	YMR067C	YLR126C	Q12288	251 aa		0.85	□□□□□ -2.27
UBX4	YMR067C	ULS1	Q08562	1619 aa		0.85	□□□□□ -2.27
UBX4	YMR067C	NUP159	P40477	1460 aa		0.85	□□□□□ -2.27
UBX4	YMR067C	PDR18	P53756	1333 aa		0.85	□□□□□ -2.27
UBX4	YMR067C	MLP2	P40457	1679 aa		0.84	□□□□□ -2.27
UBX4	YMR067C	TRM732	Q03496	1420 aa		0.84	□□□□□ -2.27
UBX4	YMR067C	YHR139C-A	O13536	103 aa		0.84	□□□□□ -2.27
UBX4	YMR067C	YEL067C	P39978	195 aa		0.84	□□□□□ -2.27
UBX4	YMR067C	IRC22	P40006	225 aa		0.84	□□□□□ -2.27
UBX4	YMR067C	YJR149W	P47177	404 aa		0.84	□□□□□ -2.27
UBX4	YMR067C	KRE28	Q04431	385 aa		0.84	□□□□□ -2.27
UBX4	YMR067C	MMS22	Q06164	1454 aa		0.84	□□□□□ -2.28
UBX4	YMR067C	PDR10	P51533	1564 aa		0.83	□□□□□ -2.28
UBX4	YMR067C	ACC1	Q00955	2233 aa	Known RBP	0.83	□□□□□ -2.28
UBX4	YMR067C	SRB4	P32569	687 aa		0.83	□□□□□ -2.28
UBX4	YMR067C	SNC2	P33328	115 aa		0.83	□□□□□ -2.28
UBX4	YMR067C	YBR209W	P38311	105 aa		0.83	□□□□□ -2.28
UBX4	YMR067C	RTT105	P40063	208 aa		0.83	□□□□□ -2.28
UBX4	YMR067C	HUA1	P40325	198 aa		0.83	□□□□□ -2.28
UBX4	YMR067C	YNR077C	P53758	84 aa		0.83	□□□□□ -2.28
UBX4	YMR067C	YDR248C	Q03786	193 aa		0.83	□□□□□ -2.28
UBX4	YMR067C	TY1B-NL2	Q99337	1749 aa	Known RBP	0.83	□□□□□ -2.28
UBX4	YMR067C	ARO1	P08566	1588 aa	Known RBP	0.83	□□□□□ -2.28
UBX4	YMR067C	AQY2	P0CD90	149 aa		0.82	□□□□□ -2.28
UBX4	YMR067C	TCP1	P12612	559 aa	Known RBP	0.82	□□□□□ -2.28
UBX4	YMR067C	ATG22	P25568	528 aa		0.82	□□□□□ -2.28
UBX4	YMR067C	PBN1	P25580	416 aa		0.82	□□□□□ -2.28
UBX4	YMR067C	DOG2	P38773	246 aa		0.82	□□□□□ -2.28
UBX4	YMR067C	RPL37B	P51402	88 aa	Known RBP	0.82	□□□□□ -2.28
UBX4	YMR067C	MRPL50	P53724	139 aa		0.82	□□□□□ -2.28
UBX4	YMR067C	LPP1	Q04396	274 aa		0.82	□□□□□ -2.28
UBX4	YMR067C	TSC3	Q3E790	80 aa		0.82	□□□□□ -2.28
UBX4	YMR067C	BUD3	P25558	1636 aa		0.82	□□□□□ -2.28
UBX4	YMR067C	YBT1	P32386	1661 aa		0.81	□□□□□ -2.28
UBX4	YMR067C	YRF1-2	P40105	1681 aa		0.81	□□□□□ -2.28
UBX4	YMR067C	TOP2	P06786	1428 aa	Known RBP	0.81	□□□□□ -2.28
UBX4	YMR067C	TRM3	Q07527	1436 aa		0.81	□□□□□ -2.28
UBX4	YMR067C	SEC7	P11075	2009 aa	Known RBP	0.81	□□□□□ -2.28
UBX4	YMR067C	VTH1	P40438	1549 aa		0.81	□□□□□ -2.28
UBX4	YMR067C	VTH2	P40890	1549 aa		0.81	□□□□□ -2.28
UBX4	YMR067C	GDB1	Q06625	1536 aa		0.81	□□□□□ -2.28
UBX4	YMR067C	MRPL28	P36527	147 aa		0.81	□□□□□ -2.28
UBX4	YMR067C	POP4	P38336	279 aa		0.81	□□□□□ -2.28
UBX4	YMR067C	KNH1	P50112	268 aa		0.81	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 118.5 ms