RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	SAS5	Q99314	248 aa		3.21	□□□□□ -1.9
NUP85	YJR042W	PHO2	P07269	559 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	YCR025C	P25352	136 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	OAC1	P32332	324 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	TCA17	P32613	152 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	MRPL3	P36516	390 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	ECM33	P38248	429 aa	Known RBP	3.2	□□□□□ -1.9
NUP85	YJR042W	APS3	P47064	194 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	YGL034C	P53186	121 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	SHY1	P53266	389 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	ABF2	Q02486	183 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	SDC1	Q03323	175 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	NHP10	Q03435	203 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	GAS3	Q03655	524 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	RRP42	Q12277	265 aa	Predicted RBP	3.2	□□□□□ -1.9
NUP85	YJR042W	RAX2	Q12465	1220 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	WIP1	Q2V2P8	89 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	CCA1	P21269	546 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	RNA14	P25298	677 aa	Known RBP	3.2	□□□□□ -1.9
NUP85	YJR042W	GLC7	P32598	312 aa	Known RBP	3.2	□□□□□ -1.9
NUP85	YJR042W	TKL2	P33315	681 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	RFS1	P38234	210 aa	Known RBP	3.2	□□□□□ -1.9
NUP85	YJR042W	CHL4	P38907	458 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	YJL043W	P47053	257 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	TIM44	Q01852	431 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	RMI1	Q02685	241 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	PRM4	Q12498	284 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	YPL247C	Q12523	523 aa		3.2	□□□□□ -1.9
NUP85	YJR042W	SEC4	P07560	215 aa	Known RBP	3.19	□□□□□ -1.9
NUP85	YJR042W	RPS28B	P0C0X0	67 aa	Known RBP	3.19	□□□□□ -1.9
NUP85	YJR042W	RSA4	P25382	515 aa	Known RBP	3.19	□□□□□ -1.9
NUP85	YJR042W	BUD23	P25627	275 aa	Predicted RBP	3.19	□□□□□ -1.9
NUP85	YJR042W	BUB2	P26448	306 aa	Predicted RBP	3.19	□□□□□ -1.9
NUP85	YJR042W	RTS2	P40962	232 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	BOL2	P53082	120 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	MPA43	P53583	542 aa	Predicted RBP	3.19	□□□□□ -1.9
NUP85	YJR042W	SWP1	Q02795	286 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	CTL1	Q03220	320 aa	Known RBP	3.19	□□□□□ -1.9
NUP85	YJR042W	SWC7	Q06707	132 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	HEM25	Q07534	307 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	YLR036C	Q07986	203 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	YLR050C	Q12155	161 aa	Known RBP	3.19	□□□□□ -1.9
NUP85	YJR042W	YLR361C-A	Q3E795	98 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	RPS28A	Q3E7X9	67 aa	Predicted RBP	3.19	□□□□□ -1.9
NUP85	YJR042W	COX5A	P00424	153 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	MRS3	P10566	314 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	URE2	P23202	354 aa	Known RBP	3.19	□□□□□ -1.9
NUP85	YJR042W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	3.19	□□□□□ -1.9	not detected
NUP85	YJR042W	MBA1	P38300	278 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	AVT6	P40074	448 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	YIA6	P40556	373 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	YGR201C	P42936	225 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	PRM8	P53174	237 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	GPI17	Q04080	534 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	YPD1	Q07688	167 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	YLR031W	Q07978	186 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	RIB3	Q99258	208 aa		3.19	□□□□□ -1.9
NUP85	YJR042W	YAL064W-B	O13512	126 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	CDC28	P00546	298 aa	Known RBP	3.18	□□□□□ -1.9
NUP85	YJR042W	YAR066W	P0CX18	203 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	YHR214W	P0CX19	203 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	ERD2	P18414	219 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	TOD6	P34219	525 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	TRM7	P38238	310 aa	Known RBP	3.18	□□□□□ -1.9
NUP85	YJR042W	WSC4	P38739	605 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	YHL026C	P38740	315 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	VMA22	P38784	181 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	CLD1	P53264	445 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	YNL046W	P53956	172 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	TDA1	Q03533	586 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	YMR206W	Q03695	313 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	TRM12	Q04235	462 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	GAL83	Q04739	417 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	YHC1	Q05900	231 aa	Known RBP	3.18	□□□□□ -1.9
NUP85	YJR042W	BSP1	Q06604	576 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	LDB18	Q07887	179 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	RPN8	Q08723	338 aa	Known RBP	3.18	□□□□□ -1.9
NUP85	YJR042W	RRS1	Q08746	203 aa	Known RBP	3.18	□□□□□ -1.9
NUP85	YJR042W	TRM10	Q12400	293 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	MED11	Q99278	115 aa		3.18	□□□□□ -1.9
NUP85	YJR042W	RPL23A	P0CX41	137 aa	Known RBP	3.17	□□□□□ -1.9
NUP85	YJR042W	RPL23B	P0CX42	137 aa	Known RBP	3.17	□□□□□ -1.9
NUP85	YJR042W	NSP1	P14907	823 aa	Known RBP	3.17	□□□□□ -1.9
NUP85	YJR042W	TAH1	P25638	111 aa	Predicted RBP	3.17	□□□□□ -1.9
NUP85	YJR042W	AGA1	P32323	725 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	PTM1	P32857	523 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	RPS1A	P33442	255 aa	Known RBP	3.17	□□□□□ -1.9
NUP85	YJR042W	KTI12	P34253	313 aa	Known RBP	3.17	□□□□□ -1.9
NUP85	YJR042W	ANR2	P36090	516 aa	Predicted RBP	3.17	□□□□□ -1.9
NUP85	YJR042W	TRS20	P38334	175 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	ECM14	P38836	430 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	BUD13	P46947	266 aa	Predicted RBP	3.17	□□□□□ -1.9
NUP85	YJR042W	ORM1	P53224	222 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	CRZ1	P53968	678 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	TSA2	Q04120	196 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	SPG3	Q04398	127 aa	Predicted RBP	3.17	□□□□□ -1.9
NUP85	YJR042W	TIR4	Q12218	487 aa	Predicted RBP	3.17	□□□□□ -1.9
NUP85	YJR042W	SNU23	Q12368	194 aa	Predicted RBP	3.17	□□□□□ -1.9
NUP85	YJR042W	UBR1	P19812	1950 aa		3.17	□□□□□ -1.9
NUP85	YJR042W	HAP2	P06774	265 aa		3.17	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 62.4 ms