RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeastyeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHR3YDL212W HMLALPHA1P0CY07 175 aa2.07□□□□□ -2.08
SHR3YDL212W YCR016WP25617 290 aaKnown RBP2.07□□□□□ -2.08
SHR3YDL212W MSN4P33749 630 aa2.07□□□□□ -2.08
SHR3YDL212W MSA2P36157 363 aa2.07□□□□□ -2.08
SHR3YDL212W YEL075CP39972 122 aa2.07□□□□□ -2.08
SHR3YDL212W YLR283WQ05867 314 aa2.07□□□□□ -2.08
SHR3YDL212W SAS5Q99314 248 aa2.07□□□□□ -2.08
SHR3YDL212W SMD3P43321 101 aaKnown RBP2.06□□□□□ -2.08
SHR3YDL212W LIA1P47120 325 aaKnown RBP2.06□□□□□ -2.08
SHR3YDL212W YGL159WP53110 370 aa2.06□□□□□ -2.08
SHR3YDL212W YLR030WQ07967 263 aa2.06□□□□□ -2.08
SHR3YDL212W YLR126CQ12288 251 aa2.06□□□□□ -2.08
SHR3YDL212W ERD2P18414 219 aa2.05□□□□□ -2.08
SHR3YDL212W COS8P38723 381 aa2.05□□□□□ -2.08
SHR3YDL212W FAR8Q05040 523 aa2.05□□□□□ -2.08
SHR3YDL212W YPR172WQ06608 200 aa2.05□□□□□ -2.08
SHR3YDL212W MSA1Q08471 629 aa2.05□□□□□ -2.08
SHR3YDL212W RUD3Q12234 484 aaKnown RBP2.05□□□□□ -2.08
SHR3YDL212W MRPL25P23369 157 aa2.04□□□□□ -2.08
SHR3YDL212W ERG24P32462 438 aaKnown RBP2.04□□□□□ -2.08
SHR3YDL212W SCM4P32564 187 aa2.04□□□□□ -2.08
SHR3YDL212W DOA4P32571 926 aa2.04□□□□□ -2.08
SHR3YDL212W YER085CP40058 173 aa2.04□□□□□ -2.08
SHR3YDL212W NOP13P53883 403 aaKnown RBP RIP-Chip data2.04□□□□□ -2.08not detected
SHR3YDL212W INM2Q05533 292 aa2.04□□□□□ -2.08
SHR3YDL212W SAC3P46674 1301 aa2.03□□□□□ -2.08
SHR3YDL212W YHR139C-AO13536 103 aa2.03□□□□□ -2.08
SHR3YDL212W COX5AP00424 153 aa2.03□□□□□ -2.08
SHR3YDL212W Q0255P03881 472 aa2.03□□□□□ -2.08
SHR3YDL212W YHR032W-AP0C5N6 59 aa2.03□□□□□ -2.08
SHR3YDL212W CCA1P21269 546 aa2.03□□□□□ -2.08
SHR3YDL212W NTG1P31378 399 aa2.03□□□□□ -2.08
SHR3YDL212W SRB4P32569 687 aa2.03□□□□□ -2.08
SHR3YDL212W YHR125WP38831 101 aa2.03□□□□□ -2.08
SHR3YDL212W CTR2P38865 189 aa2.03□□□□□ -2.08
SHR3YDL212W ARC15P40518 154 aaRIP-Chip data2.03□□□□□ -2.08not detected
SHR3YDL212W SNX4P47057 423 aa2.03□□□□□ -2.08
SHR3YDL212W RPC17P47076 161 aa2.03□□□□□ -2.08
SHR3YDL212W YJR149WP47177 404 aa2.03□□□□□ -2.08
SHR3YDL212W GTR2P53290 341 aa2.03□□□□□ -2.08
SHR3YDL212W SNA3P14359 133 aa2.02□□□□□ -2.09
SHR3YDL212W NTF2P33331 125 aaKnown RBP2.02□□□□□ -2.09
SHR3YDL212W VPS21P36017 210 aaKnown RBP2.02□□□□□ -2.09
SHR3YDL212W YFR054CP43622 192 aa2.02□□□□□ -2.09
SHR3YDL212W IPP1P00817 287 aaKnown RBP2.01□□□□□ -2.09
SHR3YDL212W RHO1P06780 209 aaKnown RBP2.01□□□□□ -2.09
SHR3YDL212W YPT52P36018 234 aaKnown RBP2.01□□□□□ -2.09
SHR3YDL212W CUE1P38428 203 aa2.01□□□□□ -2.09
SHR3YDL212W TCD1P38756 429 aa2.01□□□□□ -2.09
SHR3YDL212W LSM4P40070 187 aaKnown RBP2.01□□□□□ -2.09
SHR3YDL212W YMR144WP40214 342 aaKnown RBP2.01□□□□□ -2.09
SHR3YDL212W RPA43P46669 326 aa2.01□□□□□ -2.09
SHR3YDL212W TRM9P49957 279 aa2.01□□□□□ -2.09
SHR3YDL212W TOS8P53147 276 aa2.01□□□□□ -2.09
SHR3YDL212W FKS1P38631 1876 aaKnown RBP2.01□□□□□ -2.09
SHR3YDL212W DSF1P0CX08 502 aa2□□□□□ -2.09
SHR3YDL212W YNR073CP0CX09 502 aa2□□□□□ -2.09
SHR3YDL212W YKT6P36015 200 aaKnown RBP2□□□□□ -2.09
SHR3YDL212W RTR1P40084 226 aaPredicted RBP2□□□□□ -2.09
SHR3YDL212W CAT5P41735 233 aa2□□□□□ -2.09
SHR3YDL212W MCM22P47167 239 aa2□□□□□ -2.09
SHR3YDL212W RMR1P53060 241 aa2□□□□□ -2.09
SHR3YDL212W NIP7Q08962 181 aaKnown RBP2□□□□□ -2.09
SHR3YDL212W YPL257WQ08974 193 aa2□□□□□ -2.09
SHR3YDL212W AKR2Q12013 749 aa2□□□□□ -2.09
SHR3YDL212W HTL1Q9URQ5 78 aa2□□□□□ -2.09
SHR3YDL212W CHD1P32657 1468 aa2□□□□□ -2.09
SHR3YDL212W SIR4P11978 1358 aa1.99□□□□□ -2.09
SHR3YDL212W BCY1P07278 416 aaKnown RBP1.99□□□□□ -2.09
SHR3YDL212W MER1P16523 270 aa1.99□□□□□ -2.09
SHR3YDL212W CDC10P25342 322 aaKnown RBP1.99□□□□□ -2.09
SHR3YDL212W PEX17P40155 199 aa1.99□□□□□ -2.09
SHR3YDL212W HAM1P47119 197 aaKnown RBP1.99□□□□□ -2.09
SHR3YDL212W YMR279CQ03263 540 aa1.99□□□□□ -2.09
SHR3YDL212W RAS2P01120 322 aaKnown RBP1.98□□□□□ -2.09
SHR3YDL212W RPB4P20433 221 aaPredicted RBP1.98□□□□□ -2.09
SHR3YDL212W BMH2P34730 273 aaKnown RBP1.98□□□□□ -2.09
SHR3YDL212W RIB1P38066 345 aa1.98□□□□□ -2.09
SHR3YDL212W RPF1P38805 295 aaKnown RBP1.98□□□□□ -2.09
SHR3YDL212W FIS1P40515 155 aa1.98□□□□□ -2.09
SHR3YDL212W GCN20P43535 752 aaKnown RBP1.98□□□□□ -2.09
SHR3YDL212W OTU1P43558 301 aa1.98□□□□□ -2.09
SHR3YDL212W CGR1P53188 120 aa1.98□□□□□ -2.09
SHR3YDL212W YGR026WP53217 278 aa1.98□□□□□ -2.09
SHR3YDL212W ATG38Q05789 226 aaKnown RBP1.98□□□□□ -2.09
SHR3YDL212W THP2O13539 261 aaKnown RBP1.97□□□□□ -2.09
SHR3YDL212W SPT3P06844 337 aa1.97□□□□□ -2.09
SHR3YDL212W PUT1P09368 476 aa1.97□□□□□ -2.09
SHR3YDL212W VMA6P32366 345 aaKnown RBP1.97□□□□□ -2.09
SHR3YDL212W MIC12P38341 106 aa1.97□□□□□ -2.09
SHR3YDL212W URA8P38627 578 aaPredicted RBP1.97□□□□□ -2.09
SHR3YDL212W RTC3P38804 111 aaPredicted RBP1.97□□□□□ -2.09
SHR3YDL212W YJR056CP47115 236 aa1.97□□□□□ -2.09
SHR3YDL212W ILM1P47155 203 aa1.97□□□□□ -2.09
SHR3YDL212W ERV29P53337 310 aa1.97□□□□□ -2.09
SHR3YDL212W GIM3P53900 129 aa1.97□□□□□ -2.09
SHR3YDL212W ATG39Q06159 398 aa1.97□□□□□ -2.09
SHR3YDL212W TPO4Q12256 659 aa1.97□□□□□ -2.09
SHR3YDL212W GIS3Q12418 502 aa1.97□□□□□ -2.09
SHR3YDL212W MHT1Q12525 324 aa1.97□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 39.6 ms