RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C SDS23P53172 527 aa1.12□□□□□ -2.23
VPS54YDR027C YGR018CP53211 109 aa1.12□□□□□ -2.23
VPS54YDR027C YNR066CP53752 436 aa1.12□□□□□ -2.23
VPS54YDR027C YNL134CP53912 376 aaKnown RBP1.12□□□□□ -2.23
VPS54YDR027C YPL077CQ02831 240 aa1.12□□□□□ -2.23
VPS54YDR027C INP2Q03824 705 aa1.12□□□□□ -2.23
VPS54YDR027C ATC1Q04005 294 aa1.12□□□□□ -2.23
VPS54YDR027C YMR244WQ04018 355 aa1.12□□□□□ -2.23
VPS54YDR027C DTD1Q07648 150 aaKnown RBP1.12□□□□□ -2.23
VPS54YDR027C ADH1P00330 348 aaKnown RBP1.12□□□□□ -2.23
VPS54YDR027C TIP20P33891 701 aa1.12□□□□□ -2.23
VPS54YDR027C YKL063CP35725 167 aa1.12□□□□□ -2.23
VPS54YDR027C GGC1P38988 300 aa1.12□□□□□ -2.23
VPS54YDR027C PRM9P39551 298 aa1.12□□□□□ -2.23
VPS54YDR027C MRX5P47007 382 aa1.12□□□□□ -2.23
VPS54YDR027C VEL1P53058 206 aa1.12□□□□□ -2.23
VPS54YDR027C TIM11P81449 96 aaPredicted RBP1.12□□□□□ -2.23
VPS54YDR027C OST6Q03723 332 aa1.12□□□□□ -2.23
VPS54YDR027C VBA1Q04301 562 aa1.12□□□□□ -2.23
VPS54YDR027C DPP1Q05521 289 aa1.12□□□□□ -2.23
VPS54YDR027C PEX30Q06169 523 aa1.12□□□□□ -2.23
VPS54YDR027C GMC2Q06201 188 aa1.12□□□□□ -2.23
VPS54YDR027C TIR4Q12218 487 aaPredicted RBP1.12□□□□□ -2.23
VPS54YDR027C YPR064WQ12492 139 aa1.12□□□□□ -2.23
VPS54YDR027C FOL3Q12676 427 aaPredicted RBP1.12□□□□□ -2.23
VPS54YDR027C YAL067W-AQ8TGK6 75 aa1.12□□□□□ -2.23
VPS54YDR027C ILV1P00927 576 aaKnown RBP1.11□□□□□ -2.23
VPS54YDR027C RPL24AP04449 155 aaKnown RBP1.11□□□□□ -2.23
VPS54YDR027C ASP3-2P0CX77 362 aa1.11□□□□□ -2.23
VPS54YDR027C ASP3-3P0CX78 362 aa1.11□□□□□ -2.23
VPS54YDR027C ASP3-4P0CX79 362 aa1.11□□□□□ -2.23
VPS54YDR027C ASP3-1P0CZ17 362 aa1.11□□□□□ -2.23
VPS54YDR027C TFS1P14306 219 aa1.11□□□□□ -2.23
VPS54YDR027C MET16P18408 261 aaPredicted RBP1.11□□□□□ -2.23
VPS54YDR027C EPT1P22140 391 aa1.11□□□□□ -2.23
VPS54YDR027C POF1P25576 258 aa1.11□□□□□ -2.23
VPS54YDR027C MRPL6P32904 214 aa1.11□□□□□ -2.23
VPS54YDR027C RFT1P38206 574 aaPredicted RBP1.11□□□□□ -2.23
VPS54YDR027C SHE3P38272 425 aaKnown RBP1.11□□□□□ -2.23
VPS54YDR027C RRG9P40156 214 aa1.11□□□□□ -2.23
VPS54YDR027C AGX1P43567 385 aa1.11□□□□□ -2.23
VPS54YDR027C HIT1P46973 164 aa1.11□□□□□ -2.23
VPS54YDR027C NBP1P52919 319 aaPredicted RBP1.11□□□□□ -2.23
VPS54YDR027C KAP114P53067 1004 aa1.11□□□□□ -2.23
VPS54YDR027C FMP48P53233 369 aa1.11□□□□□ -2.23
VPS54YDR027C CPD1P53314 239 aa1.11□□□□□ -2.23
VPS54YDR027C INP1Q03694 420 aa1.11□□□□□ -2.23
VPS54YDR027C SEC13Q04491 297 aaKnown RBP1.11□□□□□ -2.23
VPS54YDR027C ARV1Q06541 321 aa1.11□□□□□ -2.23
VPS54YDR027C GPN3Q06543 272 aa1.11□□□□□ -2.23
VPS54YDR027C RRP42Q12277 265 aaPredicted RBP1.11□□□□□ -2.23
VPS54YDR027C TFC7Q12415 435 aa1.11□□□□□ -2.23
VPS54YDR027C YOL085CQ99345 113 aa1.11□□□□□ -2.23
VPS54YDR027C CWP1P28319 239 aa1.11□□□□□ -2.23
VPS54YDR027C SPS19P32573 292 aaKnown RBP1.11□□□□□ -2.23
VPS54YDR027C FMT1P32785 401 aa1.11□□□□□ -2.23
VPS54YDR027C CDC13P32797 924 aaKnown RBP1.11□□□□□ -2.23
VPS54YDR027C SKG6P32900 734 aaPredicted RBP1.11□□□□□ -2.23
VPS54YDR027C YKL187CP34231 750 aa1.11□□□□□ -2.23
VPS54YDR027C HMT1P38074 348 aa1.11□□□□□ -2.23
VPS54YDR027C YHR045WP38775 560 aa1.11□□□□□ -2.23
VPS54YDR027C TDA11P38854 504 aa1.11□□□□□ -2.23
VPS54YDR027C SMC2P38989 1170 aaKnown RBP1.11□□□□□ -2.23
VPS54YDR027C YAR1P46683 200 aa1.11□□□□□ -2.23
VPS54YDR027C YPT32P51996 222 aaKnown RBP1.11□□□□□ -2.23
VPS54YDR027C TPN1P53099 579 aa1.11□□□□□ -2.23
VPS54YDR027C PEX31P53203 462 aa1.11□□□□□ -2.23
VPS54YDR027C YMR209CQ03648 457 aa1.11□□□□□ -2.23
VPS54YDR027C YLR173WQ06247 608 aa1.11□□□□□ -2.23
VPS54YDR027C YOR292CQ08743 309 aa1.11□□□□□ -2.23
VPS54YDR027C RPS3P05750 240 aaKnown RBP1.1□□□□□ -2.23
VPS54YDR027C PET494P07390 489 aaPredicted RBP1.1□□□□□ -2.23
VPS54YDR027C ZRT3P34240 503 aa1.1□□□□□ -2.23
VPS54YDR027C MBA1P38300 278 aa1.1□□□□□ -2.23
VPS54YDR027C BIG1P38813 335 aa1.1□□□□□ -2.23
VPS54YDR027C PET100P38958 111 aa1.1□□□□□ -2.23
VPS54YDR027C YIL012WP40551 113 aa1.1□□□□□ -2.23
VPS54YDR027C BNA6P43619 295 aa1.1□□□□□ -2.23
VPS54YDR027C MCH1Q07376 486 aa1.1□□□□□ -2.23
VPS54YDR027C BTS1Q12051 335 aa1.1□□□□□ -2.23
VPS54YDR027C YPL245WQ12179 454 aaKnown RBP1.1□□□□□ -2.23
VPS54YDR027C YOR029WQ12243 111 aa1.1□□□□□ -2.23
VPS54YDR027C DFM1Q12743 341 aaKnown RBP1.1□□□□□ -2.23
VPS54YDR027C MSF1P08425 469 aa1.1□□□□□ -2.23
VPS54YDR027C VPS1P21576 704 aaKnown RBP1.1□□□□□ -2.23
VPS54YDR027C RRT12P25381 491 aa1.1□□□□□ -2.23
VPS54YDR027C RPB9P27999 122 aa1.1□□□□□ -2.23
VPS54YDR027C FRM2P37261 193 aa1.1□□□□□ -2.23
VPS54YDR027C EFM1P38732 585 aa1.1□□□□□ -2.23
VPS54YDR027C PFS2P42841 465 aaKnown RBP1.1□□□□□ -2.23
VPS54YDR027C IBA57P47158 497 aa1.1□□□□□ -2.23
VPS54YDR027C KTR6P54070 446 aa1.1□□□□□ -2.23
VPS54YDR027C SFH1Q06168 426 aa1.1□□□□□ -2.23
VPS54YDR027C LOA1Q06508 300 aa1.1□□□□□ -2.23
VPS54YDR027C VIK1Q12045 647 aa1.1□□□□□ -2.23
VPS54YDR027C YAL063C-AQ3E791 96 aa1.1□□□□□ -2.23
VPS54YDR027C HAP2P06774 265 aa1.09□□□□□ -2.23
VPS54YDR027C CBP6P07253 162 aaPredicted RBP1.09□□□□□ -2.23
VPS54YDR027C CDC42P19073 191 aa1.09□□□□□ -2.23
VPS54YDR027C COX10P21592 462 aa1.09□□□□□ -2.23
Retrieved 100 of 5,963 RNA–protein pairs in 35.3 ms