RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeastyeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF4YKR036C NTH1P32356 751 aa4.5□□□□□ -1.69
CAF4YKR036C DAL3P32459 195 aa4.5□□□□□ -1.69
CAF4YKR036C DOA1P36037 715 aa4.5□□□□□ -1.69
CAF4YKR036C SHE1P38200 338 aa4.5□□□□□ -1.69
CAF4YKR036C YEL028WP39989 153 aa4.5□□□□□ -1.69
CAF4YKR036C SLZ1P40167 298 aa4.5□□□□□ -1.69
CAF4YKR036C FMC1P40491 155 aa4.5□□□□□ -1.69
CAF4YKR036C CDC1P40986 491 aa4.5□□□□□ -1.69
CAF4YKR036C PFS2P42841 465 aaKnown RBP4.5□□□□□ -1.69
CAF4YKR036C QRI7P43122 407 aa4.5□□□□□ -1.69
CAF4YKR036C YJR149WP47177 404 aa4.5□□□□□ -1.69
CAF4YKR036C TIM21P53220 239 aa4.5□□□□□ -1.69
CAF4YKR036C BUD17P53727 317 aa4.5□□□□□ -1.69
CAF4YKR036C ASI3P53983 676 aa4.5□□□□□ -1.69
CAF4YKR036C LAP3Q01532 483 aaKnown RBP RIP-Chip data4.5□□□□□ -1.69not detected
CAF4YKR036C SPP2Q02521 185 aa4.5□□□□□ -1.69
CAF4YKR036C IRC15Q02733 499 aa4.5□□□□□ -1.69
CAF4YKR036C CWC27Q02770 301 aa4.5□□□□□ -1.69
CAF4YKR036C CTK1Q03957 528 aaKnown RBP4.5□□□□□ -1.69
CAF4YKR036C VBA4Q04602 768 aaKnown RBP4.5□□□□□ -1.69
CAF4YKR036C HRD3Q05787 833 aa4.5□□□□□ -1.69
CAF4YKR036C HDA2Q06629 674 aa4.5□□□□□ -1.69
CAF4YKR036C BSC1Q12140 328 aa4.5□□□□□ -1.69
CAF4YKR036C UPC2Q12151 913 aa4.5□□□□□ -1.69
CAF4YKR036C TMA7Q3E764 64 aaKnown RBP4.5□□□□□ -1.69
CAF4YKR036C PRB1P09232 635 aa4.5□□□□□ -1.69
CAF4YKR036C RPL31AP0C2H8 113 aaKnown RBP4.5□□□□□ -1.69
CAF4YKR036C RPL31BP0C2H9 113 aaKnown RBP4.5□□□□□ -1.69
CAF4YKR036C AMD1P15274 810 aaKnown RBP4.5□□□□□ -1.69
CAF4YKR036C MET8P15807 274 aa4.5□□□□□ -1.69
CAF4YKR036C SEC59P20048 519 aa4.5□□□□□ -1.69
CAF4YKR036C MSK1P32048 576 aa4.5□□□□□ -1.69
CAF4YKR036C RPD3P32561 433 aa4.5□□□□□ -1.69
CAF4YKR036C YEF1P32622 495 aa4.5□□□□□ -1.69
CAF4YKR036C NRP1P32770 719 aaKnown RBP RIP-Chip data4.5□□□□□ -1.69not detected
CAF4YKR036C YPT7P32939 208 aa4.5□□□□□ -1.69
CAF4YKR036C SNC2P33328 115 aa4.5□□□□□ -1.69
CAF4YKR036C YHR035WP38769 630 aa4.5□□□□□ -1.69
CAF4YKR036C PTH1P38876 190 aaKnown RBP4.5□□□□□ -1.69
CAF4YKR036C CTF8P38877 133 aa4.5□□□□□ -1.69
CAF4YKR036C OSW5P40219 148 aa4.5□□□□□ -1.69
CAF4YKR036C BUL1P48524 976 aa4.5□□□□□ -1.69
CAF4YKR036C PRM1P53835 661 aa4.5□□□□□ -1.69
CAF4YKR036C AAH1P53909 347 aa4.5□□□□□ -1.69
CAF4YKR036C KTR6P54070 446 aa4.5□□□□□ -1.69
CAF4YKR036C YPL014WQ02606 381 aa4.5□□□□□ -1.69
CAF4YKR036C BOP2Q06150 570 aa4.5□□□□□ -1.69
CAF4YKR036C DDC1Q08949 612 aa4.5□□□□□ -1.69
CAF4YKR036C YDL176WQ12027 708 aa4.5□□□□□ -1.69
CAF4YKR036C TMS1Q12116 473 aa4.5□□□□□ -1.69
CAF4YKR036C TY1A-NL1Q12391 440 aaKnown RBP4.5□□□□□ -1.69
CAF4YKR036C Q0010Q9ZZX9 128 aa4.5□□□□□ -1.69
CAF4YKR036C ATP4P05626 244 aa4.49□□□□□ -1.69
CAF4YKR036C ADH3P07246 375 aaKnown RBP4.49□□□□□ -1.69
CAF4YKR036C CUP1-1P0CX80 61 aa4.49□□□□□ -1.69
CAF4YKR036C CUP1-2P0CX81 61 aa4.49□□□□□ -1.69
CAF4YKR036C RNA15P25299 296 aaPredicted RBP4.49□□□□□ -1.69
CAF4YKR036C AAR2P32357 355 aaPredicted RBP4.49□□□□□ -1.69
CAF4YKR036C TCD2P36101 447 aaKnown RBP4.49□□□□□ -1.69
CAF4YKR036C YBR053CP38235 358 aa4.49□□□□□ -1.69
CAF4YKR036C HEM14P40012 539 aa4.49□□□□□ -1.69
CAF4YKR036C MEP2P41948 499 aa4.49□□□□□ -1.69
CAF4YKR036C GAT1P43574 510 aa4.49□□□□□ -1.69
CAF4YKR036C SIP4P46954 829 aa4.49□□□□□ -1.69
CAF4YKR036C PFD1P46988 109 aa4.49□□□□□ -1.69
CAF4YKR036C SOL1P50278 321 aa4.49□□□□□ -1.69
CAF4YKR036C PEX31P53203 462 aa4.49□□□□□ -1.69
CAF4YKR036C MPA43P53583 542 aaPredicted RBP4.49□□□□□ -1.69
CAF4YKR036C NRK1P53915 240 aa4.49□□□□□ -1.69
CAF4YKR036C GPI15P53961 229 aa4.49□□□□□ -1.69
CAF4YKR036C RTK1Q12100 620 aaPredicted RBP4.49□□□□□ -1.69
CAF4YKR036C INP53Q12271 1107 aa4.49□□□□□ -1.69
CAF4YKR036C YLR099W-AQ3E798 87 aa4.49□□□□□ -1.69
CAF4YKR036C TEL1P38110 2787 aa4.49□□□□□ -1.69
CAF4YKR036C COX5AP00424 153 aa4.48□□□□□ -1.69
CAF4YKR036C RPL9AP05738 191 aaKnown RBP4.48□□□□□ -1.69
CAF4YKR036C KIN28P06242 306 aa4.48□□□□□ -1.69
CAF4YKR036C CKA1P15790 372 aa4.48□□□□□ -1.69
CAF4YKR036C BUD5P25300 642 aaPredicted RBP4.48□□□□□ -1.69
CAF4YKR036C AHC2P25649 128 aa4.48□□□□□ -1.69
CAF4YKR036C PPG1P32838 368 aa4.48□□□□□ -1.69
CAF4YKR036C SUR1P33300 382 aa4.48□□□□□ -1.69
CAF4YKR036C NTF2P33331 125 aaKnown RBP4.48□□□□□ -1.69
CAF4YKR036C MTC2P34246 357 aa4.48□□□□□ -1.69
CAF4YKR036C COS9P36034 407 aa4.48□□□□□ -1.69
CAF4YKR036C SHE2P36068 246 aaKnown RBP RIP-Chip data4.48□□□□□ -1.69not detected
CAF4YKR036C BET3P36149 193 aa4.48□□□□□ -1.69
CAF4YKR036C YPT31P38555 223 aaKnown RBP4.48□□□□□ -1.69
CAF4YKR036C LRP1P38801 184 aaKnown RBP4.48□□□□□ -1.69
CAF4YKR036C CAT5P41735 233 aa4.48□□□□□ -1.69
CAF4YKR036C RPS10BP46784 105 aaKnown RBP4.48□□□□□ -1.69
CAF4YKR036C RPL9BP51401 191 aaKnown RBP4.48□□□□□ -1.69
CAF4YKR036C YGL114WP53134 725 aa4.48□□□□□ -1.69
CAF4YKR036C COQ6P53318 479 aa4.48□□□□□ -1.69
CAF4YKR036C MEP3P53390 489 aa4.48□□□□□ -1.69
CAF4YKR036C MTQ1P53944 314 aa4.48□□□□□ -1.69
CAF4YKR036C CYT2Q00873 224 aa4.48□□□□□ -1.69
CAF4YKR036C SEC13Q04491 297 aaKnown RBP4.48□□□□□ -1.69
CAF4YKR036C YMR253CQ04835 414 aa4.48□□□□□ -1.69
CAF4YKR036C YPR109WQ06104 294 aa4.48□□□□□ -1.69
Retrieved 100 of 5,963 RNA–protein pairs in 22 ms