RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeastyeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSM4YIL030C CSL4P53859 292 aaPredicted RBP3.27□□□□□ -1.89
SSM4YIL030C TDA7P53882 636 aaPredicted RBP3.27□□□□□ -1.89
SSM4YIL030C TIM44Q01852 431 aa3.27□□□□□ -1.89
SSM4YIL030C SLU7Q02775 382 aaKnown RBP3.27□□□□□ -1.89
SSM4YIL030C YMR265CQ03508 461 aaKnown RBP3.27□□□□□ -1.89
SSM4YIL030C BNA5Q05979 453 aa3.27□□□□□ -1.89
SSM4YIL030C FMP40Q08968 688 aaPredicted RBP3.27□□□□□ -1.89
SSM4YIL030C SRL2Q12020 392 aa3.27□□□□□ -1.89
SSM4YIL030C TY1A-GR1Q12085 440 aa3.27□□□□□ -1.89
SSM4YIL030C TY1A-PR3Q6Q5H1 440 aaKnown RBP3.27□□□□□ -1.89
SSM4YIL030C TY1A-OLQ92392 440 aaKnown RBP3.27□□□□□ -1.89
SSM4YIL030C YCR100CP25606 316 aa3.27□□□□□ -1.89
SSM4YIL030C AGA2P32781 87 aa3.27□□□□□ -1.89
SSM4YIL030C SRY1P36007 326 aa3.27□□□□□ -1.89
SSM4YIL030C PAU24P38155 120 aa3.27□□□□□ -1.89
SSM4YIL030C PSD1P39006 500 aa3.27□□□□□ -1.89
SSM4YIL030C YNL195CP40168 261 aa3.27□□□□□ -1.89
SSM4YIL030C BMT5P40493 336 aa3.27□□□□□ -1.89
SSM4YIL030C YJR030CP47101 745 aa3.27□□□□□ -1.89
SSM4YIL030C FLC3P53121 802 aa3.27□□□□□ -1.89
SSM4YIL030C YGR066CP53242 292 aa3.27□□□□□ -1.89
SSM4YIL030C YGR250CP53316 781 aaKnown RBP3.27□□□□□ -1.89
SSM4YIL030C AAH1P53909 347 aa3.27□□□□□ -1.89
SSM4YIL030C YPL108WQ02872 168 aaPredicted RBP3.27□□□□□ -1.89
SSM4YIL030C HED1Q03937 162 aa3.27□□□□□ -1.89
SSM4YIL030C RRN11Q04712 507 aa3.27□□□□□ -1.89
SSM4YIL030C SPR28Q04921 423 aa3.27□□□□□ -1.89
SSM4YIL030C UTP21Q06078 939 aaPredicted RBP3.27□□□□□ -1.89
SSM4YIL030C RRP40Q08285 240 aaKnown RBP3.27□□□□□ -1.89
SSM4YIL030C TRA1P38811 3744 aa3.27□□□□□ -1.89
SSM4YIL030C DST1P07273 309 aa3.27□□□□□ -1.89
SSM4YIL030C YOL162WP0CF19 215 aa3.27□□□□□ -1.89
SSM4YIL030C SCM4P32564 187 aa3.27□□□□□ -1.89
SSM4YIL030C MSN4P33749 630 aa3.27□□□□□ -1.89
SSM4YIL030C YBR063CP38083 404 aa3.27□□□□□ -1.89
SSM4YIL030C CHL4P38907 458 aa3.27□□□□□ -1.89
SSM4YIL030C SWM2P40342 146 aa3.27□□□□□ -1.89
SSM4YIL030C PEF1P53238 335 aa3.27□□□□□ -1.89
SSM4YIL030C SWA2Q06677 668 aa3.27□□□□□ -1.89
SSM4YIL030C HIS1P00498 297 aaKnown RBP3.27□□□□□ -1.89
SSM4YIL030C IFM1P25038 676 aa3.27□□□□□ -1.89
SSM4YIL030C SRP21P32342 167 aa3.27□□□□□ -1.89
SSM4YIL030C CTF8P38877 133 aa3.27□□□□□ -1.89
SSM4YIL030C GCV3P39726 170 aaPredicted RBP3.27□□□□□ -1.89
SSM4YIL030C BAT2P47176 376 aaKnown RBP3.27□□□□□ -1.89
SSM4YIL030C BUD17P53727 317 aa3.27□□□□□ -1.89
SSM4YIL030C RHO4Q00246 291 aa3.27□□□□□ -1.89
SSM4YIL030C NGL2Q03264 515 aaKnown RBP3.27□□□□□ -1.89
SSM4YIL030C PIN3Q06449 215 aa3.27□□□□□ -1.89
SSM4YIL030C REC8Q12188 680 aa3.27□□□□□ -1.89
SSM4YIL030C NDJ1Q12366 352 aa3.27□□□□□ -1.89
SSM4YIL030C MMP1Q12372 583 aa3.27□□□□□ -1.89
SSM4YIL030C TFC7Q12415 435 aa3.27□□□□□ -1.89
SSM4YIL030C FUR1P18562 216 aaKnown RBP3.26□□□□□ -1.89
SSM4YIL030C INM1P38710 295 aa3.26□□□□□ -1.89
SSM4YIL030C GIP2P40036 548 aa3.26□□□□□ -1.89
SSM4YIL030C YIL067CP40514 678 aa3.26□□□□□ -1.89
SSM4YIL030C MEP2P41948 499 aa3.26□□□□□ -1.89
SSM4YIL030C TIM54P47045 478 aa3.26□□□□□ -1.89
SSM4YIL030C UPF3P48412 387 aaKnown RBP3.26□□□□□ -1.89
SSM4YIL030C ACS2P52910 683 aaKnown RBP3.26□□□□□ -1.89
SSM4YIL030C LCL3P53153 274 aa3.26□□□□□ -1.89
SSM4YIL030C PCP1P53259 346 aa3.26□□□□□ -1.89
SSM4YIL030C SAY1P53324 424 aa3.26□□□□□ -1.89
SSM4YIL030C TUB4P53378 473 aa3.26□□□□□ -1.89
SSM4YIL030C ESF2P53743 316 aaKnown RBP3.26□□□□□ -1.89
SSM4YIL030C FDC1Q03034 503 aa3.26□□□□□ -1.89
SSM4YIL030C VBA4Q04602 768 aaKnown RBP3.26□□□□□ -1.89
SSM4YIL030C LEA1Q08963 238 aaPredicted RBP3.26□□□□□ -1.89
SSM4YIL030C TPO4Q12256 659 aa3.26□□□□□ -1.89
SSM4YIL030C CDC9P04819 755 aa3.26□□□□□ -1.89
SSM4YIL030C FUS1P11710 512 aa3.26□□□□□ -1.89
SSM4YIL030C YBL010CP32788 280 aa3.26□□□□□ -1.89
SSM4YIL030C YHR127WP38833 243 aaKnown RBP3.26□□□□□ -1.89
SSM4YIL030C PGD1P40356 397 aa3.26□□□□□ -1.89
SSM4YIL030C SLS1P42900 643 aa3.26□□□□□ -1.89
SSM4YIL030C HXT16P47185 567 aa3.26□□□□□ -1.89
SSM4YIL030C SRB7P47822 140 aa3.26□□□□□ -1.89
SSM4YIL030C DID2P69771 204 aa3.26□□□□□ -1.89
SSM4YIL030C YDC1Q02896 317 aa3.26□□□□□ -1.89
SSM4YIL030C NRG1Q03125 231 aa3.26□□□□□ -1.89
SSM4YIL030C RPN4Q03465 531 aa3.26□□□□□ -1.89
SSM4YIL030C SPG3Q04398 127 aaPredicted RBP3.26□□□□□ -1.89
SSM4YIL030C RSC3Q06639 885 aa3.26□□□□□ -1.89
SSM4YIL030C FEX2Q08991 375 aa3.26□□□□□ -1.89
SSM4YIL030C SUT2Q12286 268 aa3.26□□□□□ -1.89
SSM4YIL030C ARP7Q12406 477 aa3.26□□□□□ -1.89
SSM4YIL030C ARO3P14843 370 aaKnown RBP3.26□□□□□ -1.89
SSM4YIL030C PDA1P16387 420 aaKnown RBP3.26□□□□□ -1.89
SSM4YIL030C NFS1P25374 497 aa3.26□□□□□ -1.89
SSM4YIL030C DAL3P32459 195 aa3.26□□□□□ -1.89
SSM4YIL030C EDS1P38073 919 aa3.26□□□□□ -1.89
SSM4YIL030C GRE3P38715 327 aaKnown RBP RIP-Chip data3.26□□□□□ -1.89not detected
SSM4YIL030C DLS1P40366 167 aa3.26□□□□□ -1.89
SSM4YIL030C YFL066CP43538 392 aa3.26□□□□□ -1.89
SSM4YIL030C LOH1P47055 219 aa3.26□□□□□ -1.89
SSM4YIL030C LYS20P48570 428 aaKnown RBP3.26□□□□□ -1.89
SSM4YIL030C YGL159WP53110 370 aa3.26□□□□□ -1.89
SSM4YIL030C CWC25P53854 179 aaKnown RBP3.26□□□□□ -1.89
SSM4YIL030C MRPL51Q06090 140 aaPredicted RBP3.26□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 21.7 ms