RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C MRT4P33201 236 aaKnown RBP1.84□□□□□ -2.11
NIP1YMR309C CEM1P39525 442 aa1.84□□□□□ -2.11
NIP1YMR309C SBE2P42223 864 aaKnown RBP1.84□□□□□ -2.11
NIP1YMR309C YNR014WP53719 212 aa1.84□□□□□ -2.11
NIP1YMR309C ADE12P80210 433 aaKnown RBP1.84□□□□□ -2.11
NIP1YMR309C RGR1P19263 1082 aa1.82□□□□□ -2.12
NIP1YMR309C AMN1P38285 549 aaPredicted RBP1.82□□□□□ -2.12
NIP1YMR309C LSB6P42951 607 aa1.82□□□□□ -2.12
NIP1YMR309C PDC1P06169 563 aaKnown RBP1.81□□□□□ -2.12
NIP1YMR309C ALO1P54783 526 aaKnown RBP1.8□□□□□ -2.12
NIP1YMR309C OMA1P36163 345 aa1.8□□□□□ -2.12
NIP1YMR309C MCX1P38323 520 aaPredicted RBP1.8□□□□□ -2.12
NIP1YMR309C RTF1P53064 558 aa1.8□□□□□ -2.12
NIP1YMR309C NAM8Q00539 523 aaKnown RBP1.8□□□□□ -2.12
NIP1YMR309C AVT1P47082 602 aa1.79□□□□□ -2.12
NIP1YMR309C VPS70P47161 811 aa1.79□□□□□ -2.12
NIP1YMR309C CUZ1P53899 274 aa1.79□□□□□ -2.12
NIP1YMR309C YNL115CP53925 644 aa1.79□□□□□ -2.12
NIP1YMR309C CLB5P30283 435 aa1.79□□□□□ -2.12
NIP1YMR309C PSE1P32337 1089 aaKnown RBP1.79□□□□□ -2.12
NIP1YMR309C TAT1P38085 619 aa1.79□□□□□ -2.12
NIP1YMR309C MCA1Q08601 432 aa1.78□□□□□ -2.12
NIP1YMR309C YCK2P23292 546 aaKnown RBP1.78□□□□□ -2.12
NIP1YMR309C ALR1Q08269 859 aa1.78□□□□□ -2.12
NIP1YMR309C CDC19P00549 500 aaKnown RBP1.77□□□□□ -2.13
NIP1YMR309C SIT4P20604 311 aa1.77□□□□□ -2.13
NIP1YMR309C YBL086CP38177 466 aa1.77□□□□□ -2.13
NIP1YMR309C SLN1P39928 1220 aaPredicted RBP1.77□□□□□ -2.13
NIP1YMR309C BOI2P39969 1040 aa1.77□□□□□ -2.13
NIP1YMR309C YDR215CQ12240 137 aa1.77□□□□□ -2.13
NIP1YMR309C CKB1P43639 278 aa1.76□□□□□ -2.13
NIP1YMR309C YMR265CQ03508 461 aaKnown RBP1.76□□□□□ -2.13
NIP1YMR309C GIS1Q03833 894 aa1.76□□□□□ -2.13
NIP1YMR309C PBS2P08018 668 aa1.75□□□□□ -2.13
NIP1YMR309C TBF1Q02457 562 aa1.75□□□□□ -2.13
NIP1YMR309C SYT1Q06836 1226 aa1.74□□□□□ -2.13
NIP1YMR309C RPA14P50106 137 aa1.74□□□□□ -2.13
NIP1YMR309C MET1P36150 593 aa1.73□□□□□ -2.13
NIP1YMR309C TEA1P47988 759 aa1.73□□□□□ -2.13
NIP1YMR309C INP52P50942 1183 aa1.73□□□□□ -2.13
NIP1YMR309C KRE33P53914 1056 aaKnown RBP1.73□□□□□ -2.13
NIP1YMR309C MAM3Q12296 706 aa1.73□□□□□ -2.13
NIP1YMR309C DSF2P38213 736 aa1.72□□□□□ -2.13
NIP1YMR309C APP1P53933 587 aa1.72□□□□□ -2.13
NIP1YMR309C NIS1P53939 407 aa1.72□□□□□ -2.13
NIP1YMR309C YPR097WQ06839 1073 aa1.72□□□□□ -2.13
NIP1YMR309C YDL206WQ12424 762 aa1.72□□□□□ -2.13
NIP1YMR309C NUP42P49686 430 aaKnown RBP1.72□□□□□ -2.13
NIP1YMR309C DIT1P21623 536 aa1.71□□□□□ -2.14
NIP1YMR309C IES2P40154 320 aa1.71□□□□□ -2.14
NIP1YMR309C BUB1P41695 1021 aaKnown RBP RIP-Chip data1.71□□□□□ -2.14not detected
NIP1YMR309C PUS6P53294 404 aa1.71□□□□□ -2.14
NIP1YMR309C FPK1P53739 893 aa1.71□□□□□ -2.14
NIP1YMR309C SLY41P22215 453 aa1.7□□□□□ -2.14
NIP1YMR309C DFG5Q05031 458 aa1.7□□□□□ -2.14
NIP1YMR309C AOS1Q06624 347 aa1.7□□□□□ -2.14
NIP1YMR309C YDR461C-AQ2V2P7 80 aa1.7□□□□□ -2.14
NIP1YMR309C MKS1P34072 584 aa1.69□□□□□ -2.14
NIP1YMR309C PRY1P47032 299 aa1.69□□□□□ -2.14
NIP1YMR309C HST2P53686 357 aa1.69□□□□□ -2.14
NIP1YMR309C BDS1Q08347 646 aa1.69□□□□□ -2.14
NIP1YMR309C SAS10Q12136 610 aaPredicted RBP1.69□□□□□ -2.14
NIP1YMR309C VTC4P47075 721 aa1.69□□□□□ -2.14
NIP1YMR309C YMR196WQ04336 1088 aa1.69□□□□□ -2.14
NIP1YMR309C TRM1P15565 570 aaKnown RBP1.68□□□□□ -2.14
NIP1YMR309C DIT2P21595 489 aa1.68□□□□□ -2.14
NIP1YMR309C VAC17P25591 423 aa1.68□□□□□ -2.14
NIP1YMR309C GPM1P00950 247 aaKnown RBP1.68□□□□□ -2.14
NIP1YMR309C EMW1P42842 904 aaKnown RBP1.67□□□□□ -2.14
NIP1YMR309C SCJ1P25303 377 aa1.67□□□□□ -2.14
NIP1YMR309C UBP15P50101 1230 aa1.67□□□□□ -2.14
NIP1YMR309C NAF1P53919 492 aaKnown RBP1.67□□□□□ -2.14
NIP1YMR309C MMP1Q12372 583 aa1.67□□□□□ -2.14
NIP1YMR309C DAL1P32375 460 aa1.66□□□□□ -2.14
NIP1YMR309C LIP5P32875 414 aa1.66□□□□□ -2.14
NIP1YMR309C RSC30P38781 883 aa1.66□□□□□ -2.14
NIP1YMR309C ITT1Q04638 464 aa1.66□□□□□ -2.14
NIP1YMR309C GLN1P32288 370 aaKnown RBP1.66□□□□□ -2.14
NIP1YMR309C YKL222CP35995 705 aa1.66□□□□□ -2.14
NIP1YMR309C FPS1P23900 669 aa1.65□□□□□ -2.15
NIP1YMR309C UBP5P39944 805 aa1.65□□□□□ -2.15
NIP1YMR309C ELM1P32801 640 aa1.65□□□□□ -2.15
NIP1YMR309C ESS1P22696 170 aa1.64□□□□□ -2.15
NIP1YMR309C SPB4P25808 606 aaPredicted RBP1.64□□□□□ -2.15
NIP1YMR309C YJU3P28321 313 aa1.64□□□□□ -2.15
NIP1YMR309C DLD3P39976 496 aaKnown RBP1.64□□□□□ -2.15
NIP1YMR309C DMA1P38823 416 aa1.63□□□□□ -2.15
NIP1YMR309C FIG4P42837 879 aa1.63□□□□□ -2.15
NIP1YMR309C MED7Q08278 222 aa1.63□□□□□ -2.15
NIP1YMR309C STE6P12866 1290 aa1.62□□□□□ -2.15
NIP1YMR309C ATF2P53296 535 aa1.62□□□□□ -2.15
NIP1YMR309C FBP26P32604 452 aa1.62□□□□□ -2.15
NIP1YMR309C YNR021WP53723 404 aaKnown RBP1.62□□□□□ -2.15
NIP1YMR309C KTR1P27810 393 aaKnown RBP1.61□□□□□ -2.15
NIP1YMR309C KNS1P32350 737 aaPredicted RBP1.61□□□□□ -2.15
NIP1YMR309C YPR084WQ06821 456 aa1.61□□□□□ -2.15
NIP1YMR309C PDC5P16467 563 aaKnown RBP1.61□□□□□ -2.15
NIP1YMR309C RPP2BP02400 110 aaKnown RBP1.6□□□□□ -2.15
NIP1YMR309C TEC1P18412 486 aa1.6□□□□□ -2.15
NIP1YMR309C COQ2P32378 372 aa1.6□□□□□ -2.15
Retrieved 100 of 5,963 RNA–protein pairs in 10.7 ms