RNA–Protein interactions for RNA: YLR240W

VPS34, Transcript of Phosphatidylinositol (PI) 3-kinase that synthesizes PI-3-phosphate, yeast

Gene VPS34, Length 2,628 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS34	YLR240W	KIP2	P28743	706 aa		3.55	□□□□□ -1.84
VPS34	YLR240W	YNL108C	P53929	270 aa		3.55	□□□□□ -1.84
VPS34	YLR240W	FRA1	Q07825	749 aa		3.55	□□□□□ -1.84
VPS34	YLR240W	IXR1	P33417	597 aa		3.55	□□□□□ -1.84
VPS34	YLR240W	YPP1	P46951	817 aa		3.55	□□□□□ -1.84
VPS34	YLR240W	ENO2	P00925	437 aa	Known RBP	3.54	□□□□□ -1.84
VPS34	YLR240W	AIR1	P40507	360 aa	Known RBP	3.54	□□□□□ -1.84
VPS34	YLR240W	RPL34B	P40525	121 aa	Known RBP	3.54	□□□□□ -1.84
VPS34	YLR240W	RIM21	P48565	533 aa		3.54	□□□□□ -1.84
VPS34	YLR240W	SRC1	Q03707	834 aa		3.54	□□□□□ -1.84
VPS34	YLR240W	CDC4	P07834	779 aa		3.54	□□□□□ -1.84
VPS34	YLR240W	GUT2	P32191	649 aa		3.54	□□□□□ -1.84
VPS34	YLR240W	TAF7	Q05021	590 aa		3.54	□□□□□ -1.84
VPS34	YLR240W	MRX12	P47084	519 aa		3.53	□□□□□ -1.84
VPS34	YLR240W	STE20	Q03497	939 aa	Known RBP	3.53	□□□□□ -1.84
VPS34	YLR240W	MET32	Q12041	191 aa		3.53	□□□□□ -1.84
VPS34	YLR240W	MRT4	P33201	236 aa	Known RBP	3.52	□□□□□ -1.85
VPS34	YLR240W	EMP47	P43555	445 aa		3.52	□□□□□ -1.85
VPS34	YLR240W	RTG2	P32608	588 aa	Known RBP	3.52	□□□□□ -1.85
VPS34	YLR240W	EMW1	P42842	904 aa	Known RBP	3.52	□□□□□ -1.85
VPS34	YLR240W	APL6	P46682	809 aa		3.52	□□□□□ -1.85
VPS34	YLR240W	RLF2	Q12495	606 aa		3.52	□□□□□ -1.85
VPS34	YLR240W	TRK1	P12685	1235 aa		3.51	□□□□□ -1.85
VPS34	YLR240W	ISF1	P32488	338 aa		3.51	□□□□□ -1.85
VPS34	YLR240W	MRX10	Q05648	414 aa		3.51	□□□□□ -1.85
VPS34	YLR240W	ENO1	P00924	437 aa	Known RBP	3.5	□□□□□ -1.85
VPS34	YLR240W	AFT1	P22149	690 aa		3.5	□□□□□ -1.85
VPS34	YLR240W	ITT1	Q04638	464 aa		3.5	□□□□□ -1.85
VPS34	YLR240W	RTT106	P40161	455 aa		3.5	□□□□□ -1.85
VPS34	YLR240W	ATG3	P40344	310 aa		3.5	□□□□□ -1.85
VPS34	YLR240W	YPR204W	Q08995	1032 aa		3.5	□□□□□ -1.85
VPS34	YLR240W	RDS2	P19541	446 aa	Known RBP	3.49	□□□□□ -1.85
VPS34	YLR240W	MSB3	P48566	633 aa	Predicted RBP	3.49	□□□□□ -1.85
VPS34	YLR240W	APP1	P53933	587 aa		3.49	□□□□□ -1.85
VPS34	YLR240W	UTP13	Q05946	817 aa	Known RBP	3.49	□□□□□ -1.85
VPS34	YLR240W	SIS2	P36024	562 aa		3.49	□□□□□ -1.85
VPS34	YLR240W	YBL086C	P38177	466 aa		3.49	□□□□□ -1.85
VPS34	YLR240W	HST3	P53687	447 aa		3.48	□□□□□ -1.85
VPS34	YLR240W	FBP26	P32604	452 aa		3.48	□□□□□ -1.85
VPS34	YLR240W	ASH1	P34233	588 aa		3.48	□□□□□ -1.85
VPS34	YLR240W	ATG20	Q07528	640 aa		3.48	□□□□□ -1.85
VPS34	YLR240W	PEP12	P32854	288 aa		3.47	□□□□□ -1.85
VPS34	YLR240W	MKS1	P34072	584 aa		3.47	□□□□□ -1.85
VPS34	YLR240W	SOH1	P38633	127 aa		3.46	□□□□□ -1.86
VPS34	YLR240W	BRE2	P43132	505 aa		3.46	□□□□□ -1.86
VPS34	YLR240W	ISR1	Q06098	443 aa	Known RBP	3.46	□□□□□ -1.86
VPS34	YLR240W	UGA3	P26370	528 aa		3.46	□□□□□ -1.86
VPS34	YLR240W	TTI1	P36097	1038 aa		3.46	□□□□□ -1.86
VPS34	YLR240W	HAL5	P38970	855 aa	Known RBP	3.46	□□□□□ -1.86
VPS34	YLR240W	ENV9	Q08651	330 aa		3.46	□□□□□ -1.86
VPS34	YLR240W	ISU1	Q03020	165 aa		3.45	□□□□□ -1.86
VPS34	YLR240W	STE6	P12866	1290 aa		3.45	□□□□□ -1.86
VPS34	YLR240W	DFG5	Q05031	458 aa		3.44	□□□□□ -1.86
VPS34	YLR240W	PTK2	P47116	818 aa	Known RBP	3.44	□□□□□ -1.86
VPS34	YLR240W	YJR115W	P47152	169 aa		3.44	□□□□□ -1.86
VPS34	YLR240W	SPT2	P06843	333 aa	Predicted RBP	3.43	□□□□□ -1.86
VPS34	YLR240W	CPS1	P27614	576 aa		3.43	□□□□□ -1.86
VPS34	YLR240W	GCR2	Q01722	534 aa		3.43	□□□□□ -1.86
VPS34	YLR240W	BDS1	Q08347	646 aa		3.43	□□□□□ -1.86
VPS34	YLR240W	RPP2B	P02400	110 aa	Known RBP	3.43	□□□□□ -1.86
VPS34	YLR240W	SSA4	P22202	642 aa	Known RBP	3.43	□□□□□ -1.86
VPS34	YLR240W	AAD14	P42884	376 aa		3.43	□□□□□ -1.86
VPS34	YLR240W	UTR2	P32623	467 aa		3.42	□□□□□ -1.86
VPS34	YLR240W	ARG82	P07250	355 aa		3.42	□□□□□ -1.86
VPS34	YLR240W	MIP1	P15801	1254 aa		3.42	□□□□□ -1.86
VPS34	YLR240W	TGL4	P36165	910 aa		3.42	□□□□□ -1.86
VPS34	YLR240W	HDA3	Q06623	655 aa		3.42	□□□□□ -1.86
VPS34	YLR240W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	3.42	□□□□□ -1.86	not detected
VPS34	YLR240W	SRF1	Q12516	437 aa		3.42	□□□□□ -1.86
VPS34	YLR240W	AIM9	P40053	627 aa	Known RBP	3.41	□□□□□ -1.86
VPS34	YLR240W	KTR7	P40504	517 aa		3.41	□□□□□ -1.86
VPS34	YLR240W	YFL034W	P43564	1073 aa		3.41	□□□□□ -1.86
VPS34	YLR240W	PHO87	P25360	923 aa		3.4	□□□□□ -1.86
VPS34	YLR240W	SLX8	P40072	274 aa		3.4	□□□□□ -1.86
VPS34	YLR240W	NUP85	P46673	744 aa		3.4	□□□□□ -1.86
VPS34	YLR240W	WTM2	Q12206	467 aa		3.4	□□□□□ -1.86
VPS34	YLR240W	TSC13	Q99190	310 aa		3.4	□□□□□ -1.86
VPS34	YLR240W	GAL2	P13181	574 aa		3.4	□□□□□ -1.87
VPS34	YLR240W	PUP1	P25043	261 aa		3.4	□□□□□ -1.87
VPS34	YLR240W	DLD3	P39976	496 aa	Known RBP	3.4	□□□□□ -1.87
VPS34	YLR240W	HAP4	P14064	554 aa		3.4	□□□□□ -1.87
VPS34	YLR240W	TBS1	P38114	1094 aa		3.4	□□□□□ -1.87
VPS34	YLR240W	SUB2	Q07478	446 aa	Known RBP	3.4	□□□□□ -1.87
VPS34	YLR240W	ACS2	P52910	683 aa	Known RBP	3.39	□□□□□ -1.87
VPS34	YLR240W	GAS4	Q08271	471 aa		3.39	□□□□□ -1.87
VPS34	YLR240W	DAT1	P13483	248 aa	Known RBP	3.39	□□□□□ -1.87
VPS34	YLR240W	NOB1	Q08444	459 aa	Known RBP	3.39	□□□□□ -1.87
VPS34	YLR240W	PDI1	P17967	522 aa	Known RBP	3.38	□□□□□ -1.87
VPS34	YLR240W	DLD1	P32891	587 aa		3.38	□□□□□ -1.87
VPS34	YLR240W	YJR098C	P47139	656 aa		3.38	□□□□□ -1.87
VPS34	YLR240W	LSC2	P53312	427 aa		3.38	□□□□□ -1.87
VPS34	YLR240W	ECM23	Q02710	187 aa		3.38	□□□□□ -1.87
VPS34	YLR240W	SWI5	P08153	709 aa		3.38	□□□□□ -1.87
VPS34	YLR240W	RPS6A	P0CX37	236 aa	Known RBP	3.38	□□□□□ -1.87
VPS34	YLR240W	RPS6B	P0CX38	236 aa	Predicted RBP	3.38	□□□□□ -1.87
VPS34	YLR240W	VTC4	P47075	721 aa		3.38	□□□□□ -1.87
VPS34	YLR240W	ROM1	P53046	1155 aa		3.38	□□□□□ -1.87
VPS34	YLR240W	UBP1	P25037	809 aa		3.37	□□□□□ -1.87
VPS34	YLR240W	MET22	P32179	357 aa		3.37	□□□□□ -1.87
VPS34	YLR240W	NTH2	P35172	780 aa		3.37	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms