RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	NCR1	Q12200	1170 aa		5.67	□□□□□ -1.5
UBX5	YDR330W	AGE1	Q04412	482 aa		5.66	□□□□□ -1.5
UBX5	YDR330W	YPR097W	Q06839	1073 aa		5.66	□□□□□ -1.5
UBX5	YDR330W	FRA1	Q07825	749 aa		5.66	□□□□□ -1.5
UBX5	YDR330W	BUD4	P47136	1447 aa		5.66	□□□□□ -1.5
UBX5	YDR330W	ARH1	P48360	493 aa		5.64	□□□□□ -1.51
UBX5	YDR330W	MYO2	P19524	1574 aa	Known RBP	5.64	□□□□□ -1.51
UBX5	YDR330W	ATG2	P53855	1592 aa		5.64	□□□□□ -1.51
UBX5	YDR330W	SEC20	P28791	383 aa		5.64	□□□□□ -1.51
UBX5	YDR330W	ASF1	P32447	279 aa		5.64	□□□□□ -1.51
UBX5	YDR330W	FKH1	P40466	484 aa		5.64	□□□□□ -1.51
UBX5	YDR330W	FIG4	P42837	879 aa		5.64	□□□□□ -1.51
UBX5	YDR330W	PUF6	Q04373	656 aa	Known RBP	5.64	□□□□□ -1.51
UBX5	YDR330W	UTP13	Q05946	817 aa	Known RBP	5.64	□□□□□ -1.51
UBX5	YDR330W	YEL077C	Q3E7X8	1277 aa		5.64	□□□□□ -1.51
UBX5	YDR330W	YBL113C	Q7M4S9	792 aa		5.64	□□□□□ -1.51
UBX5	YDR330W	ECM5	Q03214	1411 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-DR4	O74302	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-H	P0C2I4	478 aa	Known RBP	5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-A	P0CX57	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-PR1	P0CX58	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-OR	P0CX59	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-PR2	P0CX60	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-DR5	P0CX65	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-ER2	P0CX66	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-GR3	P0CX67	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-LR1	P0CX68	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-MR2	P0CX69	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	HAP4	P14064	554 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	PHO87	P25360	923 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	PAT1	P25644	796 aa	Known RBP	5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-JR2	P47099	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	KXD1	P53158	218 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	BNI4	P53858	892 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-DR1	Q03856	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-ML1	Q04706	440 aa	Known RBP	5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-BR	Q12217	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-NL2	Q12470	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	TY1A-GR2	Q12485	440 aa		5.63	□□□□□ -1.51
UBX5	YDR330W	SEC2	P17065	759 aa		5.62	□□□□□ -1.51
UBX5	YDR330W	RRN6	P32786	894 aa		5.62	□□□□□ -1.51
UBX5	YDR330W	KAR5	Q04746	504 aa		5.62	□□□□□ -1.51
UBX5	YDR330W	YPR084W	Q06821	456 aa		5.61	□□□□□ -1.51
UBX5	YDR330W	BUD20	Q08004	166 aa	Predicted RBP	5.61	□□□□□ -1.51
UBX5	YDR330W	PDC1	P06169	563 aa	Known RBP	5.6	□□□□□ -1.51
UBX5	YDR330W	SAP30	P38429	201 aa		5.6	□□□□□ -1.51
UBX5	YDR330W	SOH1	P38633	127 aa		5.6	□□□□□ -1.51
UBX5	YDR330W	YJL171C	P46992	396 aa		5.6	□□□□□ -1.51
UBX5	YDR330W	PRT1	P06103	763 aa	Known RBP	5.59	□□□□□ -1.51
UBX5	YDR330W	ERP5	P38819	212 aa		5.59	□□□□□ -1.51
UBX5	YDR330W	IPL1	P38991	367 aa		5.59	□□□□□ -1.51
UBX5	YDR330W	MET10	P39692	1035 aa		5.59	□□□□□ -1.51
UBX5	YDR330W	PAC1	P39946	494 aa	Known RBP	5.59	□□□□□ -1.51
UBX5	YDR330W	APL6	P46682	809 aa		5.59	□□□□□ -1.51
UBX5	YDR330W	ELP4	Q02884	456 aa	Known RBP	5.59	□□□□□ -1.51
UBX5	YDR330W	CWC15	Q03772	175 aa	Known RBP	5.59	□□□□□ -1.51
UBX5	YDR330W	GAS4	Q08271	471 aa		5.59	□□□□□ -1.51
UBX5	YDR330W	AIR2	Q12476	344 aa	Known RBP	5.59	□□□□□ -1.51
UBX5	YDR330W	SPT23	P35210	1082 aa		5.58	□□□□□ -1.52
UBX5	YDR330W	RRN7	P40992	514 aa		5.58	□□□□□ -1.52
UBX5	YDR330W	ACS2	P52910	683 aa	Known RBP	5.58	□□□□□ -1.52
UBX5	YDR330W	TSC13	Q99190	310 aa		5.58	□□□□□ -1.52
UBX5	YDR330W	PEP1	P32319	1579 aa		5.58	□□□□□ -1.52
UBX5	YDR330W	SKI3	P17883	1432 aa	Known RBP	5.58	□□□□□ -1.52
UBX5	YDR330W	TPS3	P38426	1054 aa	Known RBP	5.58	□□□□□ -1.52
UBX5	YDR330W	PTC2	P39966	464 aa	Known RBP	5.58	□□□□□ -1.52
UBX5	YDR330W	HXT10	P43581	546 aa		5.58	□□□□□ -1.52
UBX5	YDR330W	MSC6	Q08818	692 aa	Known RBP	5.58	□□□□□ -1.52
UBX5	YDR330W	SPT16	P32558	1035 aa	Known RBP	5.57	□□□□□ -1.52
UBX5	YDR330W	YFL034W	P43564	1073 aa		5.57	□□□□□ -1.52
UBX5	YDR330W	ROM1	P53046	1155 aa		5.57	□□□□□ -1.52
UBX5	YDR330W	ITT1	Q04638	464 aa		5.57	□□□□□ -1.52
UBX5	YDR330W	PNP1	Q05788	311 aa		5.57	□□□□□ -1.52
UBX5	YDR330W	YPK9	Q12697	1472 aa		5.56	□□□□□ -1.52
UBX5	YDR330W	VAC17	P25591	423 aa		5.56	□□□□□ -1.52
UBX5	YDR330W	PAM1	P37304	830 aa	Known RBP	5.56	□□□□□ -1.52
UBX5	YDR330W	GRS1	P38088	690 aa	Known RBP	5.56	□□□□□ -1.52
UBX5	YDR330W	PUN1	Q06991	263 aa		5.56	□□□□□ -1.52
UBX5	YDR330W	MDS3	P53094	1487 aa		5.56	□□□□□ -1.52
UBX5	YDR330W	FUR4	P05316	633 aa	Known RBP	5.55	□□□□□ -1.52
UBX5	YDR330W	SRS2	P12954	1174 aa		5.55	□□□□□ -1.52
UBX5	YDR330W	PDI1	P17967	522 aa	Known RBP	5.55	□□□□□ -1.52
UBX5	YDR330W	VAN1	P23642	535 aa		5.55	□□□□□ -1.52
UBX5	YDR330W	TPD3	P31383	635 aa		5.55	□□□□□ -1.52
UBX5	YDR330W	YHL050C	P38721	697 aa		5.55	□□□□□ -1.52
UBX5	YDR330W	YHR219W	P38900	624 aa		5.55	□□□□□ -1.52
UBX5	YDR330W	RRD1	P40454	393 aa	Known RBP	5.55	□□□□□ -1.52
UBX5	YDR330W	ATG1	P53104	897 aa		5.55	□□□□□ -1.52
UBX5	YDR330W	BMT6	Q12291	365 aa		5.55	□□□□□ -1.52
UBX5	YDR330W	POL1	P13382	1468 aa		5.55	□□□□□ -1.52
UBX5	YDR330W	TRL1	P09880	827 aa	Known RBP	5.54	□□□□□ -1.52
UBX5	YDR330W	ORC1	P54784	914 aa	Predicted RBP	5.54	□□□□□ -1.52
UBX5	YDR330W	TRS33	Q99394	268 aa		5.54	□□□□□ -1.52
UBX5	YDR330W	CHD1	P32657	1468 aa		5.54	□□□□□ -1.52
UBX5	YDR330W	PPX1	P38698	397 aa		5.53	□□□□□ -1.52
UBX5	YDR330W	YDR344C	Q05510	147 aa		5.53	□□□□□ -1.52
UBX5	YDR330W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	5.53	□□□□□ -1.52	not detected
UBX5	YDR330W	MIP1	P15801	1254 aa		5.53	□□□□□ -1.52
UBX5	YDR330W	IXR1	P33417	597 aa		5.53	□□□□□ -1.52
UBX5	YDR330W	AIM9	P40053	627 aa	Known RBP	5.53	□□□□□ -1.52

Retrieved 100 of 5,963 RNA–protein pairs in 10.7 ms