RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeastyeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHR3YDL212W NAF1P53919 492 aaKnown RBP8.38□□□□□ -1.07
SHR3YDL212W BIM1P40013 344 aa8.36□□□□□ -1.07
SHR3YDL212W YNL108CP53929 270 aa8.36□□□□□ -1.07
SHR3YDL212W SPT5P27692 1063 aaKnown RBP8.35□□□□□ -1.07
SHR3YDL212W ATG32P40458 529 aa8.35□□□□□ -1.07
SHR3YDL212W HGH1P48362 394 aaKnown RBP8.35□□□□□ -1.07
SHR3YDL212W SUP45P12385 437 aaKnown RBP8.34□□□□□ -1.07
SHR3YDL212W MCM16Q12262 181 aa8.34□□□□□ -1.07
SHR3YDL212W ENO2P00925 437 aaKnown RBP8.32□□□□□ -1.08
SHR3YDL212W ISF1P32488 338 aa8.32□□□□□ -1.08
SHR3YDL212W MRT4P33201 236 aaKnown RBP8.31□□□□□ -1.08
SHR3YDL212W APP1P53933 587 aa8.31□□□□□ -1.08
SHR3YDL212W FRA1Q07825 749 aa8.31□□□□□ -1.08
SHR3YDL212W GUT2P32191 649 aa8.3□□□□□ -1.08
SHR3YDL212W ASH1P34233 588 aa8.3□□□□□ -1.08
SHR3YDL212W TIF1P10081 395 aaKnown RBP8.29□□□□□ -1.08
SHR3YDL212W AFT1P22149 690 aa8.28□□□□□ -1.08
SHR3YDL212W EMW1P42842 904 aaKnown RBP8.28□□□□□ -1.08
SHR3YDL212W EMP47P43555 445 aa8.28□□□□□ -1.08
SHR3YDL212W STE20Q03497 939 aaKnown RBP8.27□□□□□ -1.09
SHR3YDL212W RIM21P48565 533 aa8.26□□□□□ -1.09
SHR3YDL212W YBL086CP38177 466 aa8.24□□□□□ -1.09
SHR3YDL212W BRE2P43132 505 aa8.24□□□□□ -1.09
SHR3YDL212W APL6P46682 809 aa8.24□□□□□ -1.09
SHR3YDL212W HST3P53687 447 aa8.24□□□□□ -1.09
SHR3YDL212W RDS2P19541 446 aaKnown RBP8.22□□□□□ -1.09
SHR3YDL212W MRX10Q05648 414 aa8.22□□□□□ -1.09
SHR3YDL212W ENO1P00924 437 aaKnown RBP8.21□□□□□ -1.1
SHR3YDL212W RTG2P32608 588 aaKnown RBP8.21□□□□□ -1.1
SHR3YDL212W RPL34BP40525 121 aaKnown RBP8.21□□□□□ -1.1
SHR3YDL212W MSB3P48566 633 aaPredicted RBP8.21□□□□□ -1.1
SHR3YDL212W YPP1P46951 817 aa8.2□□□□□ -1.1
SHR3YDL212W YJR115WP47152 169 aa8.2□□□□□ -1.1
SHR3YDL212W YPR204WQ08995 1032 aa8.2□□□□□ -1.1
SHR3YDL212W MRX12P47084 519 aa8.19□□□□□ -1.1
SHR3YDL212W UGA3P26370 528 aa8.18□□□□□ -1.1
SHR3YDL212W MKS1P34072 584 aa8.18□□□□□ -1.1
SHR3YDL212W HAL5P38970 855 aaKnown RBP8.17□□□□□ -1.1
SHR3YDL212W DFG5Q05031 458 aa8.17□□□□□ -1.1
SHR3YDL212W ATG20Q07528 640 aa8.17□□□□□ -1.1
SHR3YDL212W FBP26P32604 452 aa8.16□□□□□ -1.1
SHR3YDL212W SOH1P38633 127 aa8.15□□□□□ -1.1
SHR3YDL212W PTK2P47116 818 aaKnown RBP8.15□□□□□ -1.1
SHR3YDL212W ISR1Q06098 443 aaKnown RBP8.15□□□□□ -1.1
SHR3YDL212W STE6P12866 1290 aa8.12□□□□□ -1.11
SHR3YDL212W GCR2Q01722 534 aa8.12□□□□□ -1.11
SHR3YDL212W ISU1Q03020 165 aa8.12□□□□□ -1.11
SHR3YDL212W PEP12P32854 288 aa8.11□□□□□ -1.11
SHR3YDL212W RTT106P40161 455 aa8.11□□□□□ -1.11
SHR3YDL212W UTP13Q05946 817 aaKnown RBP8.11□□□□□ -1.11
SHR3YDL212W AAD14P42884 376 aa8.1□□□□□ -1.11
SHR3YDL212W ATG3P40344 310 aa8.09□□□□□ -1.11
SHR3YDL212W ENV9Q08651 330 aa8.09□□□□□ -1.11
SHR3YDL212W TTI1P36097 1038 aa8.08□□□□□ -1.12
SHR3YDL212W BDS1Q08347 646 aa8.08□□□□□ -1.12
SHR3YDL212W MET22P32179 357 aa8.06□□□□□ -1.12
SHR3YDL212W SRF1Q12516 437 aa8.06□□□□□ -1.12
SHR3YDL212W SPT2P06843 333 aaPredicted RBP8.05□□□□□ -1.12
SHR3YDL212W ARG82P07250 355 aa8.05□□□□□ -1.12
SHR3YDL212W HDA3Q06623 655 aa8.05□□□□□ -1.12
SHR3YDL212W MIP1P15801 1254 aa8.04□□□□□ -1.12
SHR3YDL212W CPS1P27614 576 aa8.04□□□□□ -1.12
SHR3YDL212W DLD1P32891 587 aa8.04□□□□□ -1.12
SHR3YDL212W CBC2Q08920 208 aaKnown RBP RIP-Chip data8.04□□□□□ -1.12not detected
SHR3YDL212W WTM2Q12206 467 aa8.04□□□□□ -1.12
SHR3YDL212W RLF2Q12495 606 aa8.04□□□□□ -1.12
SHR3YDL212W UTR2P32623 467 aa8.03□□□□□ -1.12
SHR3YDL212W KTR7P40504 517 aa8.03□□□□□ -1.12
SHR3YDL212W NUP85P46673 744 aa8.03□□□□□ -1.12
SHR3YDL212W YJR098CP47139 656 aa8.01□□□□□ -1.13
SHR3YDL212W SLX8P40072 274 aa8□□□□□ -1.13
SHR3YDL212W YDR444WQ04093 687 aa8□□□□□ -1.13
SHR3YDL212W LCB5Q06147 687 aaKnown RBP8□□□□□ -1.13
SHR3YDL212W OPT2Q06593 877 aa8□□□□□ -1.13
SHR3YDL212W DAT1P13483 248 aaKnown RBP7.99□□□□□ -1.13
SHR3YDL212W SIS2P36024 562 aa7.99□□□□□ -1.13
SHR3YDL212W AIM9P40053 627 aaKnown RBP7.98□□□□□ -1.13
SHR3YDL212W TGL4P36165 910 aa7.97□□□□□ -1.13
SHR3YDL212W LSC2P53312 427 aa7.97□□□□□ -1.13
SHR3YDL212W ACS2P52910 683 aaKnown RBP7.96□□□□□ -1.14
SHR3YDL212W PDI1P17967 522 aaKnown RBP7.95□□□□□ -1.14
SHR3YDL212W GAR1P28007 205 aaKnown RBP7.95□□□□□ -1.14
SHR3YDL212W TBS1P38114 1094 aa7.95□□□□□ -1.14
SHR3YDL212W DLD3P39976 496 aaKnown RBP7.95□□□□□ -1.14
SHR3YDL212W UTP7P40055 554 aaKnown RBP7.95□□□□□ -1.14
SHR3YDL212W TCB1Q12466 1186 aa7.95□□□□□ -1.14
SHR3YDL212W RPP2BP02400 110 aaKnown RBP7.94□□□□□ -1.14
SHR3YDL212W SWI5P08153 709 aa7.94□□□□□ -1.14
SHR3YDL212W PUP1P25043 261 aa7.94□□□□□ -1.14
SHR3YDL212W PHO87P25360 923 aa7.94□□□□□ -1.14
SHR3YDL212W TSC13Q99190 310 aa7.94□□□□□ -1.14
SHR3YDL212W GAL2P13181 574 aa7.93□□□□□ -1.14
SHR3YDL212W GLY1P37303 387 aaKnown RBP7.93□□□□□ -1.14
SHR3YDL212W RPS6AP0CX37 236 aaKnown RBP7.92□□□□□ -1.14
SHR3YDL212W RPS6BP0CX38 236 aaPredicted RBP7.92□□□□□ -1.14
SHR3YDL212W NTH2P35172 780 aa7.92□□□□□ -1.14
SHR3YDL212W SSN3P39073 555 aa7.91□□□□□ -1.14
SHR3YDL212W SUM1P46676 1062 aa7.91□□□□□ -1.14
SHR3YDL212W ECM23Q02710 187 aa7.91□□□□□ -1.14
SHR3YDL212W YLR346CQ06139 101 aa7.91□□□□□ -1.14
Retrieved 100 of 5,963 RNA–protein pairs in 39 ms