RNA–Protein interactions for RNA: ENST00000641891.1

PHGDH-229, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,175 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-229ENST00000641891 WDR7Q9Y4E6 1490 aa23.52■■□□□ 1.36
PHGDH-229ENST00000641891 CARD11Q9BXL7 1154 aa23.51■■□□□ 1.35
PHGDH-229ENST00000641891 MAGI2Q86UL8 1455 aa23.51■■□□□ 1.35
PHGDH-229ENST00000641891 PELP1Q8IZL8 1130 aaKnown RBP23.5■■□□□ 1.35
PHGDH-229ENST00000641891 POLR3GLQ9BT43 218 aa23.5■■□□□ 1.35
PHGDH-229ENST00000641891 AFAP1Q8N556 730 aa23.48■■□□□ 1.35
PHGDH-229ENST00000641891 ARAP3Q8WWN8 1544 aa23.48■■□□□ 1.35
PHGDH-229ENST00000641891 RGL3Q3MIN7 710 aa23.46■■□□□ 1.35
PHGDH-229ENST00000641891 ZFYVE16Q7Z3T8 1539 aa23.46■■□□□ 1.35
PHGDH-229ENST00000641891 SPAG9O60271 1321 aaKnown RBP23.45■■□□□ 1.35
PHGDH-229ENST00000641891 HNRNPUQ00839 825 aaKnown RBP eCLIP23.45■■□□□ 1.35
PHGDH-229ENST00000641891 ABCA9Q8IUA7 1624 aa23.44■■□□□ 1.34
PHGDH-229ENST00000641891 A2MP01023 1474 aa23.43■■□□□ 1.34
PHGDH-229ENST00000641891 PRAG1Q86YV5 1406 aa23.43■■□□□ 1.34
PHGDH-229ENST00000641891 DHX29Q7Z478 1369 aaKnown RBP23.43■■□□□ 1.34
PHGDH-229ENST00000641891 TRPM1Q7Z4N2 1603 aa23.43■■□□□ 1.34
PHGDH-229ENST00000641891 ROCK2O75116 1388 aaKnown RBP23.42■■□□□ 1.34
PHGDH-229ENST00000641891 FANCAO15360 1455 aa23.42■■□□□ 1.34
PHGDH-229ENST00000641891 ST20-MTHFSA0A0A6YYL1 179 aa23.41■■□□□ 1.34
PHGDH-229ENST00000641891 ASXL2Q76L83 1435 aa23.4■■□□□ 1.34
PHGDH-229ENST00000641891 RTEL1-TNFRSF6BF6WH68 1400 aa23.4■■□□□ 1.34
PHGDH-229ENST00000641891 CNGB1Q14028 1251 aaPredicted RBP23.39■■□□□ 1.33
PHGDH-229ENST00000641891 FKBP8Q14318 412 aa23.39■■□□□ 1.33
PHGDH-229ENST00000641891 MRS2Q9HD23 443 aa23.39■■□□□ 1.33
PHGDH-229ENST00000641891 ATP10AO60312 1499 aa23.38■■□□□ 1.33
PHGDH-229ENST00000641891 ARID4BQ4LE39 1312 aaPredicted RBP23.37■■□□□ 1.33
PHGDH-229ENST00000641891 FAM9BQ8IZU0 186 aa23.36■■□□□ 1.33
PHGDH-229ENST00000641891 INO80Q9ULG1 1556 aaPredicted RBP23.36■■□□□ 1.33
PHGDH-229ENST00000641891 E9PCH4 1651 aa23.36■■□□□ 1.33
PHGDH-229ENST00000641891 NBPF1Q3BBV0 1214 aa23.35■■□□□ 1.33
PHGDH-229ENST00000641891 BCANQ96GW7 911 aa23.35■■□□□ 1.33
PHGDH-229ENST00000641891 ATP7AQ04656 1500 aa23.35■■□□□ 1.33
PHGDH-229ENST00000641891 ADGRL1O94910 1474 aa23.34■■□□□ 1.33
PHGDH-229ENST00000641891 OSCARQ8IYS5 282 aa23.33■■□□□ 1.32
PHGDH-229ENST00000641891 SCAPERQ9BY12 1400 aa23.32■■□□□ 1.32
PHGDH-229ENST00000641891 DEPDC5O75140 1603 aa23.31■■□□□ 1.32
PHGDH-229ENST00000641891 MYT1LQ9UL68 1186 aa23.29■■□□□ 1.32
PHGDH-229ENST00000641891 GPRASP1Q5JY77 1395 aa23.28■■□□□ 1.32
PHGDH-229ENST00000641891 NEFLP07196 543 aa23.27■■□□□ 1.32
PHGDH-229ENST00000641891 PRDM15P57071 1507 aaPredicted RBP23.26■■□□□ 1.31
PHGDH-229ENST00000641891 EIF2AK4Q9P2K8 1649 aaKnown RBP23.26■■□□□ 1.31
PHGDH-229ENST00000641891 LAMC1P11047 1609 aa23.25■■□□□ 1.31
PHGDH-229ENST00000641891 TRPM2O94759 1503 aa23.25■■□□□ 1.31
PHGDH-229ENST00000641891 SPHKAPQ2M3C7 1700 aa23.25■■□□□ 1.31
PHGDH-229ENST00000641891 TET3O43151 1660 aa23.24■■□□□ 1.31
PHGDH-229ENST00000641891 KIF3BO15066 747 aa23.24■■□□□ 1.31
PHGDH-229ENST00000641891 CLTCL1P53675 1640 aa23.23■■□□□ 1.31
PHGDH-229ENST00000641891 VWDEQ8N2E2 1590 aa23.22■■□□□ 1.31
PHGDH-229ENST00000641891 NPM1P06748 294 aaKnown RBP eCLIP23.22■■□□□ 1.31
PHGDH-229ENST00000641891 MROH1Q8NDA8 1641 aa23.21■■□□□ 1.31
PHGDH-229ENST00000641891 PTPRTO14522 1441 aa23.21■■□□□ 1.31
PHGDH-229ENST00000641891 CEP152O94986 1710 aa23.21■■□□□ 1.31
PHGDH-229ENST00000641891 KIDINS220Q9ULH0 1771 aa23.21■■□□□ 1.31
PHGDH-229ENST00000641891 RNF17Q9BXT8 1623 aaKnown RBP23.2■■□□□ 1.3
PHGDH-229ENST00000641891 KANK1Q14678 1352 aa23.19■■□□□ 1.3
PHGDH-229ENST00000641891 MADDQ8WXG6 1647 aa23.19■■□□□ 1.3
PHGDH-229ENST00000641891 TESK2Q96S53 571 aa23.17■■□□□ 1.3
PHGDH-229ENST00000641891 ZBED9Q6R2W3 1325 aa23.17■■□□□ 1.3
PHGDH-229ENST00000641891 DISP3Q9P2K9 1392 aa23.17■■□□□ 1.3
PHGDH-229ENST00000641891 COL17A1Q9UMD9 1497 aaPredicted RBP23.17■■□□□ 1.3
PHGDH-229ENST00000641891 CD109Q6YHK3 1445 aa23.15■■□□□ 1.3
PHGDH-229ENST00000641891 ZNF518AQ6AHZ1 1483 aa23.15■■□□□ 1.3
PHGDH-229ENST00000641891 IRX6P78412 446 aaPredicted RBP23.12■■□□□ 1.29
PHGDH-229ENST00000641891 UGGT1Q9NYU2 1555 aa23.12■■□□□ 1.29
PHGDH-229ENST00000641891 CFAP74Q9C0B2 1584 aa23.1■■□□□ 1.29
PHGDH-229ENST00000641891 POGZQ7Z3K3 1410 aa23.09■■□□□ 1.29
PHGDH-229ENST00000641891 TMC1Q8TDI8 760 aa23.08■■□□□ 1.29
PHGDH-229ENST00000641891 EFCAB6Q5THR3 1501 aa23.08■■□□□ 1.29
PHGDH-229ENST00000641891 IQGAP1P46940 1657 aa23.08■■□□□ 1.29
PHGDH-229ENST00000641891 PPRC1Q5VV67 1664 aaKnown RBP23.08■■□□□ 1.29
PHGDH-229ENST00000641891 PNISRQ8TF01 805 aaKnown RBP23.08■■□□□ 1.29
PHGDH-229ENST00000641891 MYBBP1AQ9BQG0 1328 aaKnown RBP23.08■■□□□ 1.28
PHGDH-229ENST00000641891 SENP3-EIF4A1A0A087X0R7 540 aa23.07■■□□□ 1.28
PHGDH-229ENST00000641891 RALBP1Q15311 655 aa23.06■■□□□ 1.28
PHGDH-229ENST00000641891 TSHZ2Q9NRE2 1034 aa23.06■■□□□ 1.28
PHGDH-229ENST00000641891 FRMPD1Q5SYB0 1578 aa23.05■■□□□ 1.28
PHGDH-229ENST00000641891 PER1O15534 1290 aaPredicted RBP23.05■■□□□ 1.28
PHGDH-229ENST00000641891 TMF1P82094 1093 aa23.05■■□□□ 1.28
PHGDH-229ENST00000641891 KTN1Q86UP2 1357 aaKnown RBP23.05■■□□□ 1.28
PHGDH-229ENST00000641891 BRD4O60885 1362 aaPredicted RBP23.03■■□□□ 1.28
PHGDH-229ENST00000641891 HECW2Q9P2P5 1572 aa23.03■■□□□ 1.28
PHGDH-229ENST00000641891 PARD3Q8TEW0 1356 aa23.03■■□□□ 1.28
PHGDH-229ENST00000641891 PANK3Q9H999 370 aa23.01■■□□□ 1.27
PHGDH-229ENST00000641891 LMTK2Q8IWU2 1503 aa23.01■■□□□ 1.27
PHGDH-229ENST00000641891 MLH3Q9UHC1 1453 aa23.01■■□□□ 1.27
PHGDH-229ENST00000641891 MROH2AA6NES4 1674 aa23.01■■□□□ 1.27
PHGDH-229ENST00000641891 ABCA6Q8N139 1617 aa23■■□□□ 1.27
PHGDH-229ENST00000641891 NEURL4Q96JN8 1562 aa23■■□□□ 1.27
PHGDH-229ENST00000641891 SCAF11Q99590 1463 aaKnown RBP23■■□□□ 1.27
PHGDH-229ENST00000641891 KIF1BO60333 1816 aa22.99■■□□□ 1.27
PHGDH-229ENST00000641891 LRPPRCP42704 1394 aaKnown RBP22.99■■□□□ 1.27
PHGDH-229ENST00000641891 CC2D1BQ5T0F9 858 aaKnown RBP22.98■■□□□ 1.27
PHGDH-229ENST00000641891 STAC3Q96MF2 364 aa22.98■■□□□ 1.27
PHGDH-229ENST00000641891 MAP3K4Q9Y6R4 1608 aa22.97■■□□□ 1.27
PHGDH-229ENST00000641891 RAPGEF3O95398 923 aa22.97■■□□□ 1.27
PHGDH-229ENST00000641891 GGT6Q6P531 493 aa22.97■■□□□ 1.27
PHGDH-229ENST00000641891 ADGRF5Q8IZF2 1346 aa22.96■■□□□ 1.27
PHGDH-229ENST00000641891 IFT172Q9UG01 1749 aa22.96■■□□□ 1.27
PHGDH-229ENST00000641891 KIAA1210Q9ULL0 1709 aa22.95■■□□□ 1.26
PHGDH-229ENST00000641891 NLRP13Q86W25 1043 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms