RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 MAGI2Q86UL8 1455 aa17.2■□□□□ 0.34
CLN6-223ENST00000637823 DIP2CQ9Y2E4 1556 aa17.18■□□□□ 0.34
CLN6-223ENST00000637823 DEPDC5O75140 1603 aa17.18■□□□□ 0.34
CLN6-223ENST00000637823 IQGAP3Q86VI3 1631 aa17.18■□□□□ 0.34
CLN6-223ENST00000637823 BCORL1Q5H9F3 1711 aa17.17■□□□□ 0.34
CLN6-223ENST00000637823 COL17A1Q9UMD9 1497 aaPredicted RBP17.16■□□□□ 0.34
CLN6-223ENST00000637823 KIF3BO15066 747 aa17.15■□□□□ 0.34
CLN6-223ENST00000637823 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.15■□□□□ 0.34
CLN6-223ENST00000637823 FAM135AQ9P2D6 1515 aa17.15■□□□□ 0.34
CLN6-223ENST00000637823 PKD2Q13563 968 aa17.14■□□□□ 0.33
CLN6-223ENST00000637823 YEATS2Q9ULM3 1422 aa17.13■□□□□ 0.33
CLN6-223ENST00000637823 ATP10AO60312 1499 aa17.13■□□□□ 0.33
CLN6-223ENST00000637823 SIN3AQ96ST3 1273 aa17.13■□□□□ 0.33
CLN6-223ENST00000637823 RNF17Q9BXT8 1623 aaKnown RBP17.13■□□□□ 0.33
CLN6-223ENST00000637823 TIMELESSQ9UNS1 1208 aa17.12■□□□□ 0.33
CLN6-223ENST00000637823 KANK1Q14678 1352 aa17.12■□□□□ 0.33
CLN6-223ENST00000637823 ANKRD30BQ9BXX2 1392 aa17.12■□□□□ 0.33
CLN6-223ENST00000637823 NEUROD1Q13562 356 aa17.1■□□□□ 0.33
CLN6-223ENST00000637823 FOXD1Q16676 465 aa17.1■□□□□ 0.33
CLN6-223ENST00000637823 VWDEQ8N2E2 1590 aa17.1■□□□□ 0.33
CLN6-223ENST00000637823 REREQ9P2R6 1566 aa17.1■□□□□ 0.33
CLN6-223ENST00000637823 PRDM15P57071 1507 aaPredicted RBP17.09■□□□□ 0.33
CLN6-223ENST00000637823 MROH1Q8NDA8 1641 aa17.09■□□□□ 0.33
CLN6-223ENST00000637823 TET3O43151 1660 aa17.07■□□□□ 0.32
CLN6-223ENST00000637823 ARHGEF40Q8TER5 1519 aa17.06■□□□□ 0.32
CLN6-223ENST00000637823 AGLP35573 1532 aa17.05■□□□□ 0.32
CLN6-223ENST00000637823 CEP152O94986 1710 aa17.04■□□□□ 0.32
CLN6-223ENST00000637823 E9PCH4 1651 aa17.04■□□□□ 0.32
CLN6-223ENST00000637823 LMTK2Q8IWU2 1503 aa17.03■□□□□ 0.32
CLN6-223ENST00000637823 GGT6Q6P531 493 aa17.03■□□□□ 0.32
CLN6-223ENST00000637823 RPRD2Q5VT52 1461 aaKnown RBP17.02■□□□□ 0.32
CLN6-223ENST00000637823 TONSLQ96HA7 1378 aa17.01■□□□□ 0.31
CLN6-223ENST00000637823 PPP6R1Q9UPN7 881 aa17■□□□□ 0.31
CLN6-223ENST00000637823 ZC3H13Q5T200 1668 aaKnown RBP17■□□□□ 0.31
CLN6-223ENST00000637823 WASHC2CQ9Y4E1 1318 aa16.98■□□□□ 0.31
CLN6-223ENST00000637823 EFCAB6Q5THR3 1501 aa16.98■□□□□ 0.31
CLN6-223ENST00000637823 SPHKAPQ2M3C7 1700 aa16.98■□□□□ 0.31
CLN6-223ENST00000637823 CFAP65Q6ZU64 1925 aaKnown RBP16.98■□□□□ 0.31
CLN6-223ENST00000637823 ABCC3O15438 1527 aa16.97■□□□□ 0.31
CLN6-223ENST00000637823 SIGLEC1Q9BZZ2 1709 aa16.97■□□□□ 0.31
CLN6-223ENST00000637823 PLA2R1Q13018 1463 aa16.97■□□□□ 0.31
CLN6-223ENST00000637823 PPP1R15AO75807 674 aaPredicted RBP16.96■□□□□ 0.31
CLN6-223ENST00000637823 CAMSAP1Q5T5Y3 1602 aa16.96■□□□□ 0.3
CLN6-223ENST00000637823 PTPRTO14522 1441 aa16.95■□□□□ 0.3
CLN6-223ENST00000637823 CCDC144AA2RUR9 1427 aa16.94■□□□□ 0.3
CLN6-223ENST00000637823 TRPM2O94759 1503 aa16.92■□□□□ 0.3
CLN6-223ENST00000637823 L3MBTL2Q969R5 705 aa16.92■□□□□ 0.3
CLN6-223ENST00000637823 ARHGAP31Q2M1Z3 1444 aa16.92■□□□□ 0.3
CLN6-223ENST00000637823 CLTCQ00610 1675 aaKnown RBP16.89■□□□□ 0.29
CLN6-223ENST00000637823 ARID4BQ4LE39 1312 aaPredicted RBP16.89■□□□□ 0.29
CLN6-223ENST00000637823 NPATQ14207 1427 aa16.88■□□□□ 0.29
CLN6-223ENST00000637823 KIF1BO60333 1816 aa16.87■□□□□ 0.29
CLN6-223ENST00000637823 MLECQ14165 292 aa16.87■□□□□ 0.29
CLN6-223ENST00000637823 CLTCL1P53675 1640 aa16.86■□□□□ 0.29
CLN6-223ENST00000637823 CNTLNQ9NXG0 1405 aa16.86■□□□□ 0.29
CLN6-223ENST00000637823 ESF1Q9H501 851 aaKnown RBP16.85■□□□□ 0.29
CLN6-223ENST00000637823 NOS1P29475 1434 aa16.84■□□□□ 0.29
CLN6-223ENST00000637823 PREX1Q8TCU6 1659 aa16.84■□□□□ 0.29
CLN6-223ENST00000637823 NEURL4Q96JN8 1562 aa16.83■□□□□ 0.28
CLN6-223ENST00000637823 SPATA31E1Q6ZUB1 1445 aa16.81■□□□□ 0.28
CLN6-223ENST00000637823 MROH2AA6NES4 1674 aa16.81■□□□□ 0.28
CLN6-223ENST00000637823 RGL3Q3MIN7 710 aa16.8■□□□□ 0.28
CLN6-223ENST00000637823 DCAF11Q8TEB1 546 aa16.8■□□□□ 0.28
CLN6-223ENST00000637823 PIK3C2BO00750 1634 aa16.8■□□□□ 0.28
CLN6-223ENST00000637823 STAC3Q96MF2 364 aa16.79■□□□□ 0.28
CLN6-223ENST00000637823 SYNMO15061 1565 aa16.79■□□□□ 0.28
CLN6-223ENST00000637823 ZMYM3Q14202 1370 aa16.78■□□□□ 0.28
CLN6-223ENST00000637823 UGGT1Q9NYU2 1555 aa16.78■□□□□ 0.28
CLN6-223ENST00000637823 SLC52A1Q9NWF4 448 aa16.78■□□□□ 0.28
CLN6-223ENST00000637823 UHRF1BP1Q6BDS2 1440 aa16.78■□□□□ 0.28
CLN6-223ENST00000637823 FER1L4A9Z1Z3 1794 aa16.77■□□□□ 0.28
CLN6-223ENST00000637823 ZNF316A6NFI3 1004 aaPredicted RBP16.77■□□□□ 0.28
CLN6-223ENST00000637823 NBPF8Q3BBV2 869 aa16.77■□□□□ 0.28
CLN6-223ENST00000637823 KDM2AQ9Y2K7 1162 aa16.77■□□□□ 0.28
CLN6-223ENST00000637823 ERVK-7P63135 1459 aa16.77■□□□□ 0.28
CLN6-223ENST00000637823 FBXO31Q5XUX0 539 aaPredicted RBP16.76■□□□□ 0.27
CLN6-223ENST00000637823 SPATA31D1Q6ZQQ2 1576 aa16.75■□□□□ 0.27
CLN6-223ENST00000637823 IDI1Q13907 227 aa16.73■□□□□ 0.27
CLN6-223ENST00000637823 ADGRB3O60242 1522 aa16.73■□□□□ 0.27
CLN6-223ENST00000637823 IFT172Q9UG01 1749 aa16.73■□□□□ 0.27
CLN6-223ENST00000637823 MYO5BQ9ULV0 1848 aa16.72■□□□□ 0.27
CLN6-223ENST00000637823 RPGRIP1LQ68CZ1 1315 aa16.71■□□□□ 0.27
CLN6-223ENST00000637823 CHGAP10645 457 aaKnown RBP16.71■□□□□ 0.27
CLN6-223ENST00000637823 ZNF326Q5BKZ1 582 aaKnown RBP16.71■□□□□ 0.27
CLN6-223ENST00000637823 C3P01024 1663 aa16.71■□□□□ 0.27
CLN6-223ENST00000637823 PPLO60437 1756 aa16.7■□□□□ 0.26
CLN6-223ENST00000637823 TMEM131LA2VDJ0 1609 aa16.7■□□□□ 0.26
CLN6-223ENST00000637823 PRAG1Q86YV5 1406 aa16.7■□□□□ 0.26
CLN6-223ENST00000637823 ADAMTSL3P82987 1691 aa16.69■□□□□ 0.26
CLN6-223ENST00000637823 RALGAPBQ86X10 1494 aa16.68■□□□□ 0.26
CLN6-223ENST00000637823 TRPM1Q7Z4N2 1603 aa16.68■□□□□ 0.26
CLN6-223ENST00000637823 MYOM2P54296 1465 aa16.67■□□□□ 0.26
CLN6-223ENST00000637823 MADDQ8WXG6 1647 aa16.67■□□□□ 0.26
CLN6-223ENST00000637823 TNRQ92752 1358 aa16.66■□□□□ 0.26
CLN6-223ENST00000637823 RIMS1Q86UR5 1692 aaKnown RBP16.65■□□□□ 0.26
CLN6-223ENST00000637823 EIF4G2P78344 907 aaKnown RBP eCLIP16.65■□□□□ 0.26
CLN6-223ENST00000637823 KDM5AP29375 1690 aaKnown RBP16.65■□□□□ 0.26
CLN6-223ENST00000637823 KIAA1210Q9ULL0 1709 aa16.65■□□□□ 0.26
CLN6-223ENST00000637823 CEBPAP49715 358 aaPredicted RBP16.63■□□□□ 0.25
CLN6-223ENST00000637823 STAG3Q9UJ98 1225 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms