RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 NISCHQ9Y2I1 1504 aa27.12■■□□□ 1.93
CLN6-223ENST00000637823 CCDC180Q9P1Z9 1646 aa23.82■■□□□ 1.4
CLN6-223ENST00000637823 ZCCHC6Q5VYS8 1495 aaKnown RBP22.72■■□□□ 1.23
CLN6-223ENST00000637823 ABCC9O60706 1549 aa22.59■■□□□ 1.21
CLN6-223ENST00000637823 DCAF1Q9Y4B6 1507 aa22.47■■□□□ 1.19
CLN6-223ENST00000637823 DCAF8L2P0C7V8 631 aa22.42■■□□□ 1.18
CLN6-223ENST00000637823 MYO15BQ96JP2 1530 aa22.3■■□□□ 1.16
CLN6-223ENST00000637823 NACADO15069 1562 aa22.21■■□□□ 1.15
CLN6-223ENST00000637823 RB1CC1Q8TDY2 1594 aa22.07■■□□□ 1.12
CLN6-223ENST00000637823 SHROOM4Q9ULL8 1493 aa21.87■■□□□ 1.09
CLN6-223ENST00000637823 SCRIBQ14160 1630 aa21.77■■□□□ 1.08
CLN6-223ENST00000637823 UNC13AQ9UPW8 1703 aa21.64■■□□□ 1.06
CLN6-223ENST00000637823 BICRAQ9NZM4 1560 aa21.37■■□□□ 1.01
CLN6-223ENST00000637823 PABPN1Q86U42 306 aaKnown RBP eCLIP21.25■□□□□ 0.99
CLN6-223ENST00000637823 CECR2Q9BXF3 1484 aa21.04■□□□□ 0.96
CLN6-223ENST00000637823 SUPT5HO00267 1087 aaKnown RBP20.98■□□□□ 0.95
CLN6-223ENST00000637823 BAZ1AQ9NRL2 1556 aaPredicted RBP20.97■□□□□ 0.95
CLN6-223ENST00000637823 RSF1Q96T23 1441 aaPredicted RBP20.94■□□□□ 0.94
CLN6-223ENST00000637823 MROH2BQ7Z745 1585 aa20.92■□□□□ 0.94
CLN6-223ENST00000637823 SMARCA4P51532 1647 aa20.9■□□□□ 0.94
CLN6-223ENST00000637823 WIZO95785 1651 aa20.76■□□□□ 0.91
CLN6-223ENST00000637823 EIF4G1Q04637 1599 aaKnown RBP20.73■□□□□ 0.91
CLN6-223ENST00000637823 PEG3Q9GZU2 1588 aa20.68■□□□□ 0.9
CLN6-223ENST00000637823 SMARCA2P51531 1590 aa20.62■□□□□ 0.89
CLN6-223ENST00000637823 ATAD2BQ9ULI0 1458 aa20.59■□□□□ 0.89
CLN6-223ENST00000637823 TOP2AP11388 1531 aaKnown RBP20.54■□□□□ 0.88
CLN6-223ENST00000637823 CC2D2AQ9P2K1 1620 aa20.49■□□□□ 0.87
CLN6-223ENST00000637823 NCAPD3P42695 1498 aa20.48■□□□□ 0.87
CLN6-223ENST00000637823 BAZ1BQ9UIG0 1483 aaKnown RBP20.46■□□□□ 0.87
CLN6-223ENST00000637823 HMGXB3Q12766 1538 aa20.43■□□□□ 0.86
CLN6-223ENST00000637823 CCDC88BA6NC98 1476 aa20.32■□□□□ 0.84
CLN6-223ENST00000637823 DNAJC5BQ9UF47 199 aa20.11■□□□□ 0.81
CLN6-223ENST00000637823 CHIC1Q5VXU3 224 aa20.01■□□□□ 0.79
CLN6-223ENST00000637823 CFTRP13569 1480 aa19.95■□□□□ 0.78
CLN6-223ENST00000637823 PRDM2Q13029 1718 aa19.93■□□□□ 0.78
CLN6-223ENST00000637823 CADPSQ9ULU8 1353 aa19.93■□□□□ 0.78
CLN6-223ENST00000637823 LAMC3Q9Y6N6 1575 aa19.83■□□□□ 0.77
CLN6-223ENST00000637823 TRIM41Q8WV44 630 aa19.79■□□□□ 0.76
CLN6-223ENST00000637823 ABCC8Q09428 1581 aa19.78■□□□□ 0.76
CLN6-223ENST00000637823 NESP48681 1621 aa19.77■□□□□ 0.76
CLN6-223ENST00000637823 WRNQ14191 1432 aaPredicted RBP eCLIP19.71■□□□□ 0.751e-9■■■■■ 46
CLN6-223ENST00000637823 FANCD2Q9BXW9 1451 aa19.69■□□□□ 0.74
CLN6-223ENST00000637823 PDS5BQ9NTI5 1447 aa19.68■□□□□ 0.74
CLN6-223ENST00000637823 SYNJ1O43426 1573 aa19.63■□□□□ 0.73
CLN6-223ENST00000637823 TOP2BQ02880 1626 aa19.62■□□□□ 0.73
CLN6-223ENST00000637823 BIVM-ERCC5R4GMW8 1640 aa19.62■□□□□ 0.73
CLN6-223ENST00000637823 CEP164Q9UPV0 1460 aa19.6■□□□□ 0.73
CLN6-223ENST00000637823 KIF21AQ7Z4S6 1674 aa19.59■□□□□ 0.73
CLN6-223ENST00000637823 CUX1P39880 1505 aa19.58■□□□□ 0.73
CLN6-223ENST00000637823 DNMBPQ6XZF7 1577 aa19.5■□□□□ 0.71
CLN6-223ENST00000637823 TOPBP1Q92547 1522 aa19.46■□□□□ 0.71
CLN6-223ENST00000637823 URB2Q14146 1524 aaKnown RBP19.45■□□□□ 0.7
CLN6-223ENST00000637823 ERCC6Q03468 1493 aa19.41■□□□□ 0.7
CLN6-223ENST00000637823 MRC2Q9UBG0 1479 aa19.41■□□□□ 0.7
CLN6-223ENST00000637823 FGD5Q6ZNL6 1462 aa19.39■□□□□ 0.69
CLN6-223ENST00000637823 EEA1Q15075 1411 aa19.37■□□□□ 0.69
CLN6-223ENST00000637823 SOGA1O94964 1423 aa19.36■□□□□ 0.69
CLN6-223ENST00000637823 FAM9AQ8IZU1 332 aaPredicted RBP19.35■□□□□ 0.69
CLN6-223ENST00000637823 POLA1P09884 1462 aaPredicted RBP19.33■□□□□ 0.68
CLN6-223ENST00000637823 WDR62O43379 1518 aa19.32■□□□□ 0.68
CLN6-223ENST00000637823 THOC2Q8NI27 1593 aaKnown RBP19.31■□□□□ 0.68
CLN6-223ENST00000637823 RUSC2Q8N2Y8 1516 aa19.3■□□□□ 0.68
CLN6-223ENST00000637823 CSRNP3Q8WYN3 585 aa19.26■□□□□ 0.67
CLN6-223ENST00000637823 KIF27Q86VH2 1401 aa19.25■□□□□ 0.67
CLN6-223ENST00000637823 RAD54L2Q9Y4B4 1467 aa19.25■□□□□ 0.67
CLN6-223ENST00000637823 ABCA10Q8WWZ4 1543 aa19.24■□□□□ 0.67
CLN6-223ENST00000637823 CUX2O14529 1486 aa19.22■□□□□ 0.67
CLN6-223ENST00000637823 WDR97A6NE52 1622 aa19.22■□□□□ 0.67
CLN6-223ENST00000637823 LOC105371045A0A1W2PR82 267 aa19.21■□□□□ 0.67
CLN6-223ENST00000637823 TARBP1Q13395 1621 aaKnown RBP19.21■□□□□ 0.67
CLN6-223ENST00000637823 IFT140Q96RY7 1462 aa19.16■□□□□ 0.66
CLN6-223ENST00000637823 KIF21BO75037 1637 aa19.12■□□□□ 0.65
CLN6-223ENST00000637823 ABCA5Q8WWZ7 1642 aa19.11■□□□□ 0.65
CLN6-223ENST00000637823 IGF1RP08069 1367 aa19.1■□□□□ 0.65
CLN6-223ENST00000637823 TDRD9Q8NDG6 1382 aaKnown RBP19.09■□□□□ 0.65
CLN6-223ENST00000637823 GAPVD1Q14C86 1478 aa19.08■□□□□ 0.64
CLN6-223ENST00000637823 PRXQ9BXM0 1461 aa19.06■□□□□ 0.64
CLN6-223ENST00000637823 GOLGA3Q08378 1498 aa19.05■□□□□ 0.64
CLN6-223ENST00000637823 EHMT2Q96KQ7 1210 aa19.04■□□□□ 0.64
CLN6-223ENST00000637823 ERICH3Q5RHP9 1530 aa19.04■□□□□ 0.64
CLN6-223ENST00000637823 CUL7Q14999 1698 aa19.01■□□□□ 0.63
CLN6-223ENST00000637823 PBRM1Q86U86 1689 aa19.01■□□□□ 0.63
CLN6-223ENST00000637823 CARMIL1Q5VZK9 1371 aa19.01■□□□□ 0.63
CLN6-223ENST00000637823 AQRO60306 1485 aaKnown RBP eCLIP19.01■□□□□ 0.632e-7■■■■□ 23.4
CLN6-223ENST00000637823 ZNF608Q9ULD9 1512 aaPredicted RBP19■□□□□ 0.63
CLN6-223ENST00000637823 RAPGEF2Q9Y4G8 1499 aa18.98■□□□□ 0.63
CLN6-223ENST00000637823 UBTFP17480 764 aaKnown RBP18.98■□□□□ 0.63
CLN6-223ENST00000637823 TNIKQ9UKE5 1360 aa18.97■□□□□ 0.63
CLN6-223ENST00000637823 GRIN2BQ13224 1484 aa18.97■□□□□ 0.63
CLN6-223ENST00000637823 EIF4G3O43432 1585 aaKnown RBP18.96■□□□□ 0.63
CLN6-223ENST00000637823 DNAJC5Q9H3Z4 198 aa18.91■□□□□ 0.62
CLN6-223ENST00000637823 FHAD1B1AJZ9 1412 aa18.87■□□□□ 0.61
CLN6-223ENST00000637823 ADAMTS12P58397 1594 aa18.85■□□□□ 0.61
CLN6-223ENST00000637823 MAGI1Q96QZ7 1491 aaPredicted RBP18.84■□□□□ 0.61
CLN6-223ENST00000637823 SNAPC4Q5SXM2 1469 aa18.83■□□□□ 0.6
CLN6-223ENST00000637823 CEP162Q5TB80 1403 aa18.82■□□□□ 0.6
CLN6-223ENST00000637823 CTTNBP2Q8WZ74 1663 aa18.79■□□□□ 0.6
CLN6-223ENST00000637823 SYNJ2O15056 1496 aa18.76■□□□□ 0.59
CLN6-223ENST00000637823 CLIP1P30622 1438 aa18.73■□□□□ 0.59
CLN6-223ENST00000637823 CHMP7Q8WUX9 453 aaPredicted RBP18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms