RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 MAGI2Q86UL8 1455 aa29.73■■■□□ 2.35
LIME1-210ENST00000621325 DCAF11Q8TEB1 546 aa29.72■■■□□ 2.35
LIME1-210ENST00000621325 CCDC144AA2RUR9 1427 aa29.71■■■□□ 2.35
LIME1-210ENST00000621325 RTEL1-TNFRSF6BF6WH68 1400 aa29.71■■■□□ 2.35
LIME1-210ENST00000621325 NPM1P06748 294 aaKnown RBP eCLIP29.7■■■□□ 2.35
LIME1-210ENST00000621325 USP47Q96K76 1375 aa29.7■■■□□ 2.34
LIME1-210ENST00000621325 KIF7Q2M1P5 1343 aa29.69■■■□□ 2.34
LIME1-210ENST00000621325 ADGRL1O94910 1474 aa29.68■■■□□ 2.34
LIME1-210ENST00000621325 SCAPERQ9BY12 1400 aa29.68■■■□□ 2.34
LIME1-210ENST00000621325 CNTLNQ9NXG0 1405 aa29.67■■■□□ 2.34
LIME1-210ENST00000621325 RALGAPBQ86X10 1494 aa29.66■■■□□ 2.34
LIME1-210ENST00000621325 RGL3Q3MIN7 710 aa29.64■■■□□ 2.34
LIME1-210ENST00000621325 ATP7AQ04656 1500 aa29.62■■■□□ 2.33
LIME1-210ENST00000621325 KDM5CP41229 1560 aa29.62■■■□□ 2.33
LIME1-210ENST00000621325 CARD11Q9BXL7 1154 aa29.61■■■□□ 2.33
LIME1-210ENST00000621325 INO80Q9ULG1 1556 aaPredicted RBP29.61■■■□□ 2.33
LIME1-210ENST00000621325 MYT1LQ9UL68 1186 aa29.61■■■□□ 2.33
LIME1-210ENST00000621325 BCORL1Q5H9F3 1711 aa29.59■■■□□ 2.33
LIME1-210ENST00000621325 POLR1AO95602 1720 aaPredicted RBP29.57■■■□□ 2.32
LIME1-210ENST00000621325 ATP10AO60312 1499 aa29.56■■■□□ 2.32
LIME1-210ENST00000621325 A2MP01023 1474 aa29.55■■■□□ 2.32
LIME1-210ENST00000621325 PRAG1Q86YV5 1406 aa29.53■■■□□ 2.32
LIME1-210ENST00000621325 CD109Q6YHK3 1445 aa29.52■■■□□ 2.32
LIME1-210ENST00000621325 KIF3BO15066 747 aa29.51■■■□□ 2.31
LIME1-210ENST00000621325 POLR3GLQ9BT43 218 aa29.51■■■□□ 2.31
LIME1-210ENST00000621325 ROCK2O75116 1388 aaKnown RBP29.51■■■□□ 2.31
LIME1-210ENST00000621325 E9PCH4 1651 aa29.5■■■□□ 2.31
LIME1-210ENST00000621325 DEPDC5O75140 1603 aa29.5■■■□□ 2.31
LIME1-210ENST00000621325 PRKCSHP14314 528 aaPredicted RBP29.5■■■□□ 2.31
LIME1-210ENST00000621325 DHX29Q7Z478 1369 aaKnown RBP29.48■■■□□ 2.31
LIME1-210ENST00000621325 ST20-MTHFSA0A0A6YYL1 179 aa29.48■■■□□ 2.31
LIME1-210ENST00000621325 PRKRIP1Q9H875 184 aaPredicted RBP29.47■■■□□ 2.31
LIME1-210ENST00000621325 NBPF1Q3BBV0 1214 aa29.46■■■□□ 2.31
LIME1-210ENST00000621325 KIDINS220Q9ULH0 1771 aa29.45■■■□□ 2.31
LIME1-210ENST00000621325 TRPM1Q7Z4N2 1603 aa29.45■■■□□ 2.31
LIME1-210ENST00000621325 CCDC184Q52MB2 194 aa29.45■■■□□ 2.3
LIME1-210ENST00000621325 ZNF518AQ6AHZ1 1483 aa29.44■■■□□ 2.3
LIME1-210ENST00000621325 VWDEQ8N2E2 1590 aa29.41■■■□□ 2.3
LIME1-210ENST00000621325 KANK1Q14678 1352 aa29.4■■■□□ 2.3
LIME1-210ENST00000621325 MROH1Q8NDA8 1641 aa29.39■■■□□ 2.3
LIME1-210ENST00000621325 TET3O43151 1660 aa29.39■■■□□ 2.3
LIME1-210ENST00000621325 ARID4BQ4LE39 1312 aaPredicted RBP29.38■■■□□ 2.29
LIME1-210ENST00000621325 PTPRTO14522 1441 aa29.38■■■□□ 2.29
LIME1-210ENST00000621325 POGZQ7Z3K3 1410 aa29.38■■■□□ 2.29
LIME1-210ENST00000621325 TRPM2O94759 1503 aa29.38■■■□□ 2.29
LIME1-210ENST00000621325 EIF2AK4Q9P2K8 1649 aaKnown RBP29.38■■■□□ 2.29
LIME1-210ENST00000621325 CYB5RLQ6IPT4 315 aa29.37■■■□□ 2.29
LIME1-210ENST00000621325 PRDM15P57071 1507 aaPredicted RBP29.36■■■□□ 2.29
LIME1-210ENST00000621325 SPHKAPQ2M3C7 1700 aa29.35■■■□□ 2.29
LIME1-210ENST00000621325 CFAP74Q9C0B2 1584 aa29.35■■■□□ 2.29
LIME1-210ENST00000621325 GPRASP1Q5JY77 1395 aa29.35■■■□□ 2.29
LIME1-210ENST00000621325 CLTCL1P53675 1640 aa29.33■■■□□ 2.29
LIME1-210ENST00000621325 CNGB1Q14028 1251 aaPredicted RBP29.33■■■□□ 2.29
LIME1-210ENST00000621325 RAPGEF3O95398 923 aa29.29■■■□□ 2.28
LIME1-210ENST00000621325 MLH3Q9UHC1 1453 aa29.29■■■□□ 2.28
LIME1-210ENST00000621325 HNRNPUQ00839 825 aaKnown RBP eCLIP29.28■■■□□ 2.28
LIME1-210ENST00000621325 MRS2Q9HD23 443 aa29.28■■■□□ 2.28
LIME1-210ENST00000621325 CEP152O94986 1710 aa29.27■■■□□ 2.28
LIME1-210ENST00000621325 FRMPD1Q5SYB0 1578 aa29.26■■■□□ 2.27
LIME1-210ENST00000621325 SUPT16HQ9Y5B9 1047 aaKnown RBP29.26■■■□□ 2.27
LIME1-210ENST00000621325 HECW2Q9P2P5 1572 aa29.25■■■□□ 2.27
LIME1-210ENST00000621325 NEO1Q92859 1461 aa29.24■■■□□ 2.27
LIME1-210ENST00000621325 UGGT1Q9NYU2 1555 aa29.24■■■□□ 2.27
LIME1-210ENST00000621325 LAMC1P11047 1609 aa29.24■■■□□ 2.27
LIME1-210ENST00000621325 EFCAB6Q5THR3 1501 aa29.23■■■□□ 2.27
LIME1-210ENST00000621325 FAM9BQ8IZU0 186 aa29.22■■■□□ 2.27
LIME1-210ENST00000621325 PPRC1Q5VV67 1664 aaKnown RBP29.22■■■□□ 2.27
LIME1-210ENST00000621325 MADDQ8WXG6 1647 aa29.21■■■□□ 2.27
LIME1-210ENST00000621325 TESK2Q96S53 571 aa29.21■■■□□ 2.27
LIME1-210ENST00000621325 ABCA6Q8N139 1617 aa29.2■■■□□ 2.27
LIME1-210ENST00000621325 RNF17Q9BXT8 1623 aaKnown RBP29.2■■■□□ 2.27
LIME1-210ENST00000621325 GGT6Q6P531 493 aa29.2■■■□□ 2.27
LIME1-210ENST00000621325 RIMBP3CA6NJZ7 1639 aa29.19■■■□□ 2.26
LIME1-210ENST00000621325 RIMBP3BA6NNM3 1639 aa29.19■■■□□ 2.26
LIME1-210ENST00000621325 RIMBP3Q9UFD9 1639 aa29.19■■■□□ 2.26
LIME1-210ENST00000621325 LMTK2Q8IWU2 1503 aa29.17■■■□□ 2.26
LIME1-210ENST00000621325 DISP3Q9P2K9 1392 aa29.16■■■□□ 2.26
LIME1-210ENST00000621325 MAP3K4Q9Y6R4 1608 aa29.15■■■□□ 2.26
LIME1-210ENST00000621325 COL17A1Q9UMD9 1497 aaPredicted RBP29.13■■■□□ 2.25
LIME1-210ENST00000621325 ANP32EQ9BTT0 268 aa29.12■■■□□ 2.25
LIME1-210ENST00000621325 NPATQ14207 1427 aa29.1■■■□□ 2.25
LIME1-210ENST00000621325 STAC3Q96MF2 364 aa29.1■■■□□ 2.25
LIME1-210ENST00000621325 DIP2CQ9Y2E4 1556 aa29.08■■■□□ 2.25
LIME1-210ENST00000621325 RICTORQ6R327 1708 aa29.08■■■□□ 2.25
LIME1-210ENST00000621325 WASHC2CQ9Y4E1 1318 aa29.07■■■□□ 2.24
LIME1-210ENST00000621325 NEURL4Q96JN8 1562 aa29.07■■■□□ 2.24
LIME1-210ENST00000621325 FAM69CQ0P6D2 419 aa29.06■■■□□ 2.24
LIME1-210ENST00000621325 GLI2P10070 1586 aa29.06■■■□□ 2.24
LIME1-210ENST00000621325 CFAP65Q6ZU64 1925 aaKnown RBP29.06■■■□□ 2.24
LIME1-210ENST00000621325 YEATS2Q9ULM3 1422 aa29.05■■■□□ 2.24
LIME1-210ENST00000621325 ADGRF5Q8IZF2 1346 aa29.05■■■□□ 2.24
LIME1-210ENST00000621325 KIF1BO60333 1816 aa29.04■■■□□ 2.24
LIME1-210ENST00000621325 TMF1P82094 1093 aa29.04■■■□□ 2.24
LIME1-210ENST00000621325 ABCC3O15438 1527 aa29.04■■■□□ 2.24
LIME1-210ENST00000621325 MROH2AA6NES4 1674 aa29.04■■■□□ 2.24
LIME1-210ENST00000621325 IQGAP1P46940 1657 aa29.04■■■□□ 2.24
LIME1-210ENST00000621325 FKBP8Q14318 412 aa29.03■■■□□ 2.24
LIME1-210ENST00000621325 CHGAP10645 457 aaKnown RBP29.01■■■□□ 2.23
LIME1-210ENST00000621325 CFAP70Q5T0N1 1121 aa29.01■■■□□ 2.23
LIME1-210ENST00000621325 SCAF11Q99590 1463 aaKnown RBP29.01■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms