RNA–Protein interactions for RNA: ENST00000621016.4

CDH1-214, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 3,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-214ENST00000621016 NUDCQ9Y266 331 aa14.23□□□□□ -0.13
CDH1-214ENST00000621016 SENP3Q9H4L4 574 aaPredicted RBP14.23□□□□□ -0.13
CDH1-214ENST00000621016 PNISRQ8TF01 805 aaKnown RBP14.23□□□□□ -0.13
CDH1-214ENST00000621016 SPATA31E1Q6ZUB1 1445 aa14.22□□□□□ -0.13
CDH1-214ENST00000621016 KIF15Q9NS87 1388 aa14.22□□□□□ -0.13
CDH1-214ENST00000621016 KIAA0556O60303 1618 aa14.21□□□□□ -0.13
CDH1-214ENST00000621016 PLIN1O60240 522 aa14.21□□□□□ -0.14
CDH1-214ENST00000621016 GCC2Q8IWJ2 1684 aa14.21□□□□□ -0.14
CDH1-214ENST00000621016 ANP32AP39687 249 aaKnown RBP14.2□□□□□ -0.14
CDH1-214ENST00000621016 CDCA7LQ96GN5 454 aa14.2□□□□□ -0.14
CDH1-214ENST00000621016 KIF14Q15058 1648 aa14.19□□□□□ -0.14
CDH1-214ENST00000621016 DHX29Q7Z478 1369 aaKnown RBP14.19□□□□□ -0.14
CDH1-214ENST00000621016 RAPGEF6Q8TEU7 1601 aa14.19□□□□□ -0.14
CDH1-214ENST00000621016 SKAP1Q86WV1 359 aa14.19□□□□□ -0.14
CDH1-214ENST00000621016 C9orf84Q5VXU9 1444 aa14.19□□□□□ -0.14
CDH1-214ENST00000621016 FGD1P98174 961 aa14.18□□□□□ -0.14
CDH1-214ENST00000621016 EXOC6Q8TAG9 804 aa14.17□□□□□ -0.14
CDH1-214ENST00000621016 RSPH6AQ9H0K4 717 aa14.17□□□□□ -0.14
CDH1-214ENST00000621016 DNMT1P26358 1616 aaKnown RBP14.17□□□□□ -0.14
CDH1-214ENST00000621016 AAMPQ13685 434 aa14.16□□□□□ -0.14
CDH1-214ENST00000621016 PTPRGP23470 1445 aa14.16□□□□□ -0.14
CDH1-214ENST00000621016 PDIA4P13667 645 aaKnown RBP14.15□□□□□ -0.14
CDH1-214ENST00000621016 PANK3Q9H999 370 aa14.15□□□□□ -0.14
CDH1-214ENST00000621016 ARXQ96QS3 562 aa14.14□□□□□ -0.15
CDH1-214ENST00000621016 EIF4G3O43432 1585 aaKnown RBP14.14□□□□□ -0.15
CDH1-214ENST00000621016 ATP10BO94823 1461 aa14.13□□□□□ -0.15
CDH1-214ENST00000621016 IPO9Q96P70 1041 aaKnown RBP14.13□□□□□ -0.15
CDH1-214ENST00000621016 HSP90AA2PQ14568 343 aaPredicted RBP14.13□□□□□ -0.15
CDH1-214ENST00000621016 RCAN3Q9UKA8 241 aa14.12□□□□□ -0.15
CDH1-214ENST00000621016 MYBBP1AQ9BQG0 1328 aaKnown RBP14.12□□□□□ -0.15
CDH1-214ENST00000621016 NAP1L5Q96NT1 182 aaPredicted RBP14.12□□□□□ -0.15
CDH1-214ENST00000621016 MAGI1Q96QZ7 1491 aaPredicted RBP14.11□□□□□ -0.15
CDH1-214ENST00000621016 CCDC144AA2RUR9 1427 aa14.11□□□□□ -0.15
CDH1-214ENST00000621016 SYNJ2O15056 1496 aa14.11□□□□□ -0.15
CDH1-214ENST00000621016 CEP170Q5SW79 1584 aa14.11□□□□□ -0.15
CDH1-214ENST00000621016 BCORL1Q5H9F3 1711 aa14.09□□□□□ -0.15
CDH1-214ENST00000621016 RALBP1Q15311 655 aa14.09□□□□□ -0.15
CDH1-214ENST00000621016 NLRP13Q86W25 1043 aa14.09□□□□□ -0.15
CDH1-214ENST00000621016 KTN1Q86UP2 1357 aaKnown RBP14.08□□□□□ -0.16
CDH1-214ENST00000621016 SMG6Q86US8 1419 aaKnown RBP14.08□□□□□ -0.16
CDH1-214ENST00000621016 CHGAP10645 457 aaKnown RBP14.08□□□□□ -0.16
CDH1-214ENST00000621016 AFAP1Q8N556 730 aa14.08□□□□□ -0.16
CDH1-214ENST00000621016 RRP1P56182 461 aaKnown RBP14.07□□□□□ -0.16
CDH1-214ENST00000621016 CCDC146Q8IYE0 955 aa14.05□□□□□ -0.16
CDH1-214ENST00000621016 TNNT2P45379 298 aaPredicted RBP14.05□□□□□ -0.16
CDH1-214ENST00000621016 FRAT1Q92837 279 aaPredicted RBP14.05□□□□□ -0.16
CDH1-214ENST00000621016 TMF1P82094 1093 aa14.04□□□□□ -0.16
CDH1-214ENST00000621016 ADAMTS8Q9UP79 889 aa14.04□□□□□ -0.16
CDH1-214ENST00000621016 KNSTRNQ9Y448 316 aa14.04□□□□□ -0.16
CDH1-214ENST00000621016 DISP3Q9P2K9 1392 aa14.04□□□□□ -0.16
CDH1-214ENST00000621016 RGS3P49796 1198 aa14.03□□□□□ -0.16
CDH1-214ENST00000621016 GSE1Q14687 1217 aa14.02□□□□□ -0.16
CDH1-214ENST00000621016 WDR43Q15061 677 aaKnown RBP eCLIP14.02□□□□□ -0.16
CDH1-214ENST00000621016 C20orf194Q5TEA3 1177 aa14.02□□□□□ -0.17
CDH1-214ENST00000621016 PLEKHH2Q8IVE3 1493 aa14.01□□□□□ -0.17
CDH1-214ENST00000621016 PER1O15534 1290 aaPredicted RBP14.01□□□□□ -0.17
CDH1-214ENST00000621016 NEUROD2Q15784 382 aa14.01□□□□□ -0.17
CDH1-214ENST00000621016 CRBNQ96SW2 442 aa14.01□□□□□ -0.17
CDH1-214ENST00000621016 MBD5Q9P267 1494 aa14□□□□□ -0.17
CDH1-214ENST00000621016 BRD4O60885 1362 aaPredicted RBP14□□□□□ -0.17
CDH1-214ENST00000621016 ARHGAP5Q13017 1502 aa14□□□□□ -0.17
CDH1-214ENST00000621016 SLC4A3P48751 1232 aa13.99□□□□□ -0.17
CDH1-214ENST00000621016 PAXIP1Q6ZW49 1069 aaPredicted RBP13.99□□□□□ -0.17
CDH1-214ENST00000621016 TESK2Q96S53 571 aa13.99□□□□□ -0.17
CDH1-214ENST00000621016 RALGAPBQ86X10 1494 aa13.99□□□□□ -0.17
CDH1-214ENST00000621016 ADGRL2O95490 1459 aa13.99□□□□□ -0.17
CDH1-214ENST00000621016 KDM5CP41229 1560 aa13.98□□□□□ -0.17
CDH1-214ENST00000621016 KIF3BO15066 747 aa13.98□□□□□ -0.17
CDH1-214ENST00000621016 AMER1Q5JTC6 1135 aaPredicted RBP13.98□□□□□ -0.17
CDH1-214ENST00000621016 NUTM2DQ5VT03 806 aaPredicted RBP13.98□□□□□ -0.17
CDH1-214ENST00000621016 ABCC10Q5T3U5 1492 aa13.97□□□□□ -0.17
CDH1-214ENST00000621016 NUP160Q12769 1436 aa13.97□□□□□ -0.17
CDH1-214ENST00000621016 WASHC2CQ9Y4E1 1318 aa13.97□□□□□ -0.17
CDH1-214ENST00000621016 HSP90AA1P07900 732 aaKnown RBP13.97□□□□□ -0.17
CDH1-214ENST00000621016 EFCAB2Q5VUJ9 269 aa13.97□□□□□ -0.17
CDH1-214ENST00000621016 ARID3AQ99856 593 aa13.97□□□□□ -0.17
CDH1-214ENST00000621016 KLHL34Q8N239 644 aa13.97□□□□□ -0.17
CDH1-214ENST00000621016 ITSN2Q9NZM3 1697 aa13.96□□□□□ -0.17
CDH1-214ENST00000621016 CCDC141Q6ZP82 1450 aa13.96□□□□□ -0.17
CDH1-214ENST00000621016 RSPH4AQ5TD94 716 aa13.96□□□□□ -0.18
CDH1-214ENST00000621016 PDE4AP27815 886 aa13.95□□□□□ -0.18
CDH1-214ENST00000621016 SYCP2Q9BX26 1530 aa13.95□□□□□ -0.18
CDH1-214ENST00000621016 FAM135AQ9P2D6 1515 aa13.95□□□□□ -0.18
CDH1-214ENST00000621016 CHMP4BQ9H444 224 aaKnown RBP13.95□□□□□ -0.18
CDH1-214ENST00000621016 SPAG9O60271 1321 aaKnown RBP13.95□□□□□ -0.18
CDH1-214ENST00000621016 PRAG1Q86YV5 1406 aa13.95□□□□□ -0.18
CDH1-214ENST00000621016 UHRF1BP1Q6BDS2 1440 aa13.94□□□□□ -0.18
CDH1-214ENST00000621016 CFAP70Q5T0N1 1121 aa13.93□□□□□ -0.18
CDH1-214ENST00000621016 RNF123Q5XPI4 1314 aa13.93□□□□□ -0.18
CDH1-214ENST00000621016 RRAGDQ9NQL2 400 aaPredicted RBP13.93□□□□□ -0.18
CDH1-214ENST00000621016 LRPPRCP42704 1394 aaKnown RBP13.93□□□□□ -0.18
CDH1-214ENST00000621016 CDC42BPAQ5VT25 1732 aa13.92□□□□□ -0.18
CDH1-214ENST00000621016 PPP2R1AP30153 589 aa13.92□□□□□ -0.18
CDH1-214ENST00000621016 PLA2R1Q13018 1463 aa13.92□□□□□ -0.18
CDH1-214ENST00000621016 ERBINQ96RT1 1412 aa13.92□□□□□ -0.18
CDH1-214ENST00000621016 APAF1O14727 1248 aa13.92□□□□□ -0.18
CDH1-214ENST00000621016 SAFB2Q14151 953 aaKnown RBP eCLIP13.92□□□□□ -0.18
CDH1-214ENST00000621016 ADGBQ8N7X0 1667 aa13.91□□□□□ -0.18
CDH1-214ENST00000621016 A2MP01023 1474 aa13.9□□□□□ -0.18
CDH1-214ENST00000621016 RRP7AQ9Y3A4 280 aaKnown RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms