RNA–Protein interactions for RNA: ENST00000607055.1

NECAB3-221, Transcript of N-terminal EF-hand calcium binding protein 3, human

TSL 4

Gene NECAB3, Length 554 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAB3-221	ENST00000607055	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	32.33	■■■□□ 2.77
NECAB3-221	ENST00000607055	RAB3GAP2	Q9H2M9	1393 aa		32.3	■■■□□ 2.76
NECAB3-221	ENST00000607055	DEPDC5	O75140	1603 aa		32.29	■■■□□ 2.76
NECAB3-221	ENST00000607055	MROH1	Q8NDA8	1641 aa		32.29	■■■□□ 2.76
NECAB3-221	ENST00000607055	UNC13B	O14795	1591 aa		32.27	■■■□□ 2.76
NECAB3-221	ENST00000607055	PRDM15	P57071	1507 aa	Predicted RBP	32.26	■■■□□ 2.76
NECAB3-221	ENST00000607055	KANK1	Q14678	1352 aa		32.24	■■■□□ 2.75
NECAB3-221	ENST00000607055	ESF1	Q9H501	851 aa	Known RBP	32.24	■■■□□ 2.75
NECAB3-221	ENST00000607055	ADAMTSL3	P82987	1691 aa		32.24	■■■□□ 2.75
NECAB3-221	ENST00000607055	TRIM52	Q96A61	297 aa		32.23	■■■□□ 2.75
NECAB3-221	ENST00000607055	PPP6R1	Q9UPN7	881 aa		32.23	■■■□□ 2.75
NECAB3-221	ENST00000607055	WASHC2C	Q9Y4E1	1318 aa		32.23	■■■□□ 2.75
NECAB3-221	ENST00000607055	MADD	Q8WXG6	1647 aa		32.22	■■■□□ 2.75
NECAB3-221	ENST00000607055	NUP155	O75694	1391 aa		32.21	■■■□□ 2.75
NECAB3-221	ENST00000607055	FER1L4	A9Z1Z3	1794 aa		32.2	■■■□□ 2.75
NECAB3-221	ENST00000607055	KDM5D	Q9BY66	1539 aa		32.2	■■■□□ 2.74
NECAB3-221	ENST00000607055	ABCC3	O15438	1527 aa		32.17	■■■□□ 2.74
NECAB3-221	ENST00000607055	VWDE	Q8N2E2	1590 aa		32.17	■■■□□ 2.74
NECAB3-221	ENST00000607055	CLTC	Q00610	1675 aa	Known RBP	32.17	■■■□□ 2.74
NECAB3-221	ENST00000607055	FAM135A	Q9P2D6	1515 aa		32.16	■■■□□ 2.74
NECAB3-221	ENST00000607055	KDM4F	A0A1W2PPD8	638 aa		32.16	■■■□□ 2.74
NECAB3-221	ENST00000607055	CEP152	O94986	1710 aa		32.15	■■■□□ 2.74
NECAB3-221	ENST00000607055	HRC	P23327	699 aa		32.15	■■■□□ 2.74
NECAB3-221	ENST00000607055	CNTLN	Q9NXG0	1405 aa		32.15	■■■□□ 2.74
NECAB3-221	ENST00000607055	RIMS1	Q86UR5	1692 aa	Known RBP	32.15	■■■□□ 2.74
NECAB3-221	ENST00000607055	ZC3H13	Q5T200	1668 aa	Known RBP	32.14	■■■□□ 2.74
NECAB3-221	ENST00000607055	IQGAP3	Q86VI3	1631 aa		32.13	■■■□□ 2.73
NECAB3-221	ENST00000607055	ACIN1	Q9UKV3	1341 aa	Known RBP	32.13	■■■□□ 2.73
NECAB3-221	ENST00000607055	LMTK2	Q8IWU2	1503 aa		32.1	■■■□□ 2.73
NECAB3-221	ENST00000607055	AEBP2	Q6ZN18	517 aa	Predicted RBP	32.08	■■■□□ 2.73
NECAB3-221	ENST00000607055	PZP	P20742	1482 aa		32.07	■■■□□ 2.72
NECAB3-221	ENST00000607055	CAMSAP1	Q5T5Y3	1602 aa		32.07	■■■□□ 2.72
NECAB3-221	ENST00000607055	ZMYM3	Q14202	1370 aa		32.07	■■■□□ 2.72
NECAB3-221	ENST00000607055	MROH2A	A6NES4	1674 aa		32.06	■■■□□ 2.72
NECAB3-221	ENST00000607055	PLPPR3	Q6T4P5	718 aa		32.06	■■■□□ 2.72
NECAB3-221	ENST00000607055	SLC4A1AP	Q9BWU0	796 aa	Known RBP	32.04	■■■□□ 2.72
NECAB3-221	ENST00000607055	TET3	O43151	1660 aa		32.04	■■■□□ 2.72
NECAB3-221	ENST00000607055	PTPRM	P28827	1452 aa		32.03	■■■□□ 2.72
NECAB3-221	ENST00000607055	EFCAB6	Q5THR3	1501 aa		32.02	■■■□□ 2.72
NECAB3-221	ENST00000607055	CEBPA	P49715	358 aa	Predicted RBP	32.02	■■■□□ 2.72
NECAB3-221	ENST00000607055	MPHOSPH9	Q99550	1183 aa		32	■■■□□ 2.71
NECAB3-221	ENST00000607055	C3	P01024	1663 aa		31.99	■■■□□ 2.71
NECAB3-221	ENST00000607055	NPAT	Q14207	1427 aa		31.98	■■■□□ 2.71
NECAB3-221	ENST00000607055	ARHGAP31	Q2M1Z3	1444 aa		31.98	■■■□□ 2.71
NECAB3-221	ENST00000607055	PKD2	Q13563	968 aa		31.96	■■■□□ 2.71
NECAB3-221	ENST00000607055	FBXO31	Q5XUX0	539 aa	Predicted RBP	31.94	■■■□□ 2.7
NECAB3-221	ENST00000607055		E9PCH4	1651 aa		31.94	■■■□□ 2.7
NECAB3-221	ENST00000607055	RPRD2	Q5VT52	1461 aa	Known RBP	31.91	■■■□□ 2.7
NECAB3-221	ENST00000607055	FOXD1	Q16676	465 aa		31.89	■■■□□ 2.7
NECAB3-221	ENST00000607055	ERVK-7	P63135	1459 aa		31.88	■■■□□ 2.69
NECAB3-221	ENST00000607055	CFAP65	Q6ZU64	1925 aa	Known RBP	31.87	■■■□□ 2.69
NECAB3-221	ENST00000607055	PREX1	Q8TCU6	1659 aa		31.86	■■■□□ 2.69
NECAB3-221	ENST00000607055	SPATA31D1	Q6ZQQ2	1576 aa		31.84	■■■□□ 2.69
NECAB3-221	ENST00000607055	NOS1	P29475	1434 aa		31.82	■■■□□ 2.68
NECAB3-221	ENST00000607055	DHX57	Q6P158	1386 aa	Known RBP	31.81	■■■□□ 2.68
NECAB3-221	ENST00000607055	TNR	Q92752	1358 aa		31.81	■■■□□ 2.68
NECAB3-221	ENST00000607055	PTPRT	O14522	1441 aa		31.77	■■■□□ 2.68
NECAB3-221	ENST00000607055	SPHKAP	Q2M3C7	1700 aa		31.77	■■■□□ 2.68
NECAB3-221	ENST00000607055	SYNM	O15061	1565 aa		31.77	■■■□□ 2.68
NECAB3-221	ENST00000607055	PLA2R1	Q13018	1463 aa		31.74	■■■□□ 2.67
NECAB3-221	ENST00000607055	TRPM2	O94759	1503 aa		31.72	■■■□□ 2.67
NECAB3-221	ENST00000607055	UGGT1	Q9NYU2	1555 aa		31.7	■■■□□ 2.67
NECAB3-221	ENST00000607055	MYO3A	Q8NEV4	1616 aa		31.69	■■■□□ 2.66
NECAB3-221	ENST00000607055	ANKRD30B	Q9BXX2	1392 aa		31.68	■■■□□ 2.66
NECAB3-221	ENST00000607055	NLRP1	Q9C000	1473 aa		31.67	■■■□□ 2.66
NECAB3-221	ENST00000607055	SETD1B	Q9UPS6	1966 aa	Known RBP	31.67	■■■□□ 2.66
NECAB3-221	ENST00000607055	IDI1	Q13907	227 aa		31.67	■■■□□ 2.66
NECAB3-221	ENST00000607055	SLC52A1	Q9NWF4	448 aa		31.67	■■■□□ 2.66
NECAB3-221	ENST00000607055	UHRF1BP1	Q6BDS2	1440 aa		31.66	■■■□□ 2.66
NECAB3-221	ENST00000607055	CLTCL1	P53675	1640 aa		31.64	■■■□□ 2.66
NECAB3-221	ENST00000607055	CCDC144A	A2RUR9	1427 aa		31.64	■■■□□ 2.66
NECAB3-221	ENST00000607055	PIK3C2B	O00750	1634 aa		31.64	■■■□□ 2.65
NECAB3-221	ENST00000607055	A2ML1	A8K2U0	1454 aa		31.61	■■■□□ 2.65
NECAB3-221	ENST00000607055	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	31.6	■■■□□ 2.65
NECAB3-221	ENST00000607055	CHGA	P10645	457 aa	Known RBP	31.59	■■■□□ 2.65
NECAB3-221	ENST00000607055	STAG3	Q9UJ98	1225 aa		31.59	■■■□□ 2.65
NECAB3-221	ENST00000607055	CCER1	Q8TC90	406 aa	Predicted RBP	31.58	■■■□□ 2.65
NECAB3-221	ENST00000607055	ZNF142	P52746	1687 aa	Predicted RBP	31.57	■■■□□ 2.64
NECAB3-221	ENST00000607055	ADGRB3	O60242	1522 aa		31.54	■■■□□ 2.64
NECAB3-221	ENST00000607055	LMTK3	Q96Q04	1460 aa		31.52	■■■□□ 2.64
NECAB3-221	ENST00000607055	UBR1	Q8IWV7	1749 aa		31.51	■■■□□ 2.63
NECAB3-221	ENST00000607055	TMEM131L	A2VDJ0	1609 aa		31.5	■■■□□ 2.63
NECAB3-221	ENST00000607055	SIN3A	Q96ST3	1273 aa		31.5	■■■□□ 2.63
NECAB3-221	ENST00000607055	KIF1B	O60333	1816 aa		31.49	■■■□□ 2.63
NECAB3-221	ENST00000607055	THEMIS	Q8N1K5	641 aa	Predicted RBP	31.48	■■■□□ 2.63
NECAB3-221	ENST00000607055	KDM5A	P29375	1690 aa	Known RBP	31.46	■■■□□ 2.63
NECAB3-221	ENST00000607055	NEUROD1	Q13562	356 aa		31.46	■■■□□ 2.63
NECAB3-221	ENST00000607055	HSPA2	P54652	639 aa		31.45	■■■□□ 2.63
NECAB3-221	ENST00000607055	MYO5B	Q9ULV0	1848 aa		31.45	■■■□□ 2.62
NECAB3-221	ENST00000607055	ZNF326	Q5BKZ1	582 aa	Known RBP	31.44	■■■□□ 2.62
NECAB3-221	ENST00000607055	SPATA31E1	Q6ZUB1	1445 aa		31.43	■■■□□ 2.62
NECAB3-221	ENST00000607055	RGL3	Q3MIN7	710 aa		31.43	■■■□□ 2.62
NECAB3-221	ENST00000607055	CLSPN	Q9HAW4	1339 aa		31.43	■■■□□ 2.62
NECAB3-221	ENST00000607055	TMEM2	Q9UHN6	1383 aa		31.39	■■■□□ 2.62
NECAB3-221	ENST00000607055	NEURL4	Q96JN8	1562 aa		31.37	■■■□□ 2.61
NECAB3-221	ENST00000607055	SLIT1	O75093	1534 aa		31.35	■■■□□ 2.61
NECAB3-221	ENST00000607055	ARHGAP23	Q9P227	1491 aa		31.35	■■■□□ 2.61
NECAB3-221	ENST00000607055	RIMS2	Q9UQ26	1411 aa		31.35	■■■□□ 2.61
NECAB3-221	ENST00000607055	NUTM2D	Q5VT03	806 aa	Predicted RBP	31.32	■■■□□ 2.6
NECAB3-221	ENST00000607055	ZFYVE9	O95405	1425 aa		31.32	■■■□□ 2.6

Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms