RNA–Protein interactions for RNA: ENST00000600117.1

CCDC9-205, Transcript of coiled-coil domain containing 9, humanhuman

TSL 2

Gene CCDC9, Length 580 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-205ENST00000600117 ZMYM3Q14202 1370 aa28.8■■■□□ 2.2
CCDC9-205ENST00000600117 SPAG9O60271 1321 aaKnown RBP28.79■■■□□ 2.2
CCDC9-205ENST00000600117 ZNF335Q9H4Z2 1342 aaPredicted RBP28.78■■■□□ 2.2
CCDC9-205ENST00000600117 NCKAP5LQ9HCH0 1330 aa28.78■■■□□ 2.2
CCDC9-205ENST00000600117 UBAP1LF5GYI3 381 aa28.78■■■□□ 2.2
CCDC9-205ENST00000600117 MAST1Q9Y2H9 1570 aa28.78■■■□□ 2.2
CCDC9-205ENST00000600117 ATP7AQ04656 1500 aa28.78■■■□□ 2.2
CCDC9-205ENST00000600117 SHANK2Q9UPX8 1470 aa28.77■■■□□ 2.2
CCDC9-205ENST00000600117 ZNF142P52746 1687 aaPredicted RBP28.77■■■□□ 2.2
CCDC9-205ENST00000600117 PLA2R1Q13018 1463 aa28.76■■■□□ 2.19
CCDC9-205ENST00000600117 RTEL1-TNFRSF6BF6WH68 1400 aa28.76■■■□□ 2.19
CCDC9-205ENST00000600117 PKD2Q13563 968 aa28.74■■■□□ 2.19
CCDC9-205ENST00000600117 MYO3AQ8NEV4 1616 aa28.73■■■□□ 2.19
CCDC9-205ENST00000600117 TSPY4P0CV99 314 aa28.73■■■□□ 2.19
CCDC9-205ENST00000600117 TSPY10P0CW01 314 aa28.73■■■□□ 2.19
CCDC9-205ENST00000600117 PTPRKQ15262 1439 aa28.73■■■□□ 2.19
CCDC9-205ENST00000600117 CLTCQ00610 1675 aaKnown RBP28.73■■■□□ 2.19
CCDC9-205ENST00000600117 CEP170BQ9Y4F5 1589 aaPredicted RBP28.7■■■□□ 2.18
CCDC9-205ENST00000600117 PLXNC1O60486 1568 aa28.68■■■□□ 2.18
CCDC9-205ENST00000600117 ADGRL2O95490 1459 aa28.66■■■□□ 2.18
CCDC9-205ENST00000600117 ADGBQ8N7X0 1667 aa28.64■■■□□ 2.18
CCDC9-205ENST00000600117 ITGAEP38570 1179 aa28.63■■■□□ 2.17
CCDC9-205ENST00000600117 CHIC2Q9UKJ5 165 aa28.63■■■□□ 2.17
CCDC9-205ENST00000600117 A2MP01023 1474 aa28.63■■■□□ 2.17
CCDC9-205ENST00000600117 PPP6R1Q9UPN7 881 aa28.61■■■□□ 2.17
CCDC9-205ENST00000600117 ANKRD30AQ9BXX3 1397 aa28.59■■■□□ 2.17
CCDC9-205ENST00000600117 GGT6Q6P531 493 aa28.57■■■□□ 2.16
CCDC9-205ENST00000600117 ROCK1Q13464 1354 aa28.57■■■□□ 2.16
CCDC9-205ENST00000600117 KIF15Q9NS87 1388 aa28.56■■■□□ 2.16
CCDC9-205ENST00000600117 A2ML1A8K2U0 1454 aa28.54■■■□□ 2.16
CCDC9-205ENST00000600117 DHX29Q7Z478 1369 aaKnown RBP28.54■■■□□ 2.16
CCDC9-205ENST00000600117 RRP7BPQ9NSQ0 103 aa28.54■■■□□ 2.16
CCDC9-205ENST00000600117 MED1Q15648 1581 aaPredicted RBP28.53■■■□□ 2.16
CCDC9-205ENST00000600117 DUOX2Q9NRD8 1548 aa28.53■■■□□ 2.16
CCDC9-205ENST00000600117 HSPA1LP34931 641 aa28.51■■■□□ 2.15
CCDC9-205ENST00000600117 CPS1P31327 1500 aa28.5■■■□□ 2.15
CCDC9-205ENST00000600117 POLR1AO95602 1720 aaPredicted RBP28.49■■■□□ 2.15
CCDC9-205ENST00000600117 SCAF1Q9H7N4 1312 aaKnown RBP28.48■■■□□ 2.15
CCDC9-205ENST00000600117 TOM1O60784 492 aa28.48■■■□□ 2.15
CCDC9-205ENST00000600117 PIP4K2BP78356 416 aa28.46■■■□□ 2.15
CCDC9-205ENST00000600117 ERBINQ96RT1 1412 aa28.45■■■□□ 2.15
CCDC9-205ENST00000600117 NEURL4Q96JN8 1562 aa28.45■■■□□ 2.14
CCDC9-205ENST00000600117 EIF2AK4Q9P2K8 1649 aaKnown RBP28.43■■■□□ 2.14
CCDC9-205ENST00000600117 HFM1A2PYH4 1435 aa28.42■■■□□ 2.14
CCDC9-205ENST00000600117 NAIPQ13075 1403 aa28.42■■■□□ 2.14
CCDC9-205ENST00000600117 GCC2Q8IWJ2 1684 aa28.42■■■□□ 2.14
CCDC9-205ENST00000600117 ANKRD50Q9ULJ7 1429 aa28.41■■■□□ 2.14
CCDC9-205ENST00000600117 TRIM26Q12899 539 aaPredicted RBP28.4■■■□□ 2.14
CCDC9-205ENST00000600117 TNRQ92752 1358 aa28.39■■■□□ 2.14
CCDC9-205ENST00000600117 RNF17Q9BXT8 1623 aaKnown RBP28.37■■■□□ 2.13
CCDC9-205ENST00000600117 KIF3BO15066 747 aa28.37■■■□□ 2.13
CCDC9-205ENST00000600117 PZPP20742 1482 aa28.35■■■□□ 2.13
CCDC9-205ENST00000600117 FAM135AQ9P2D6 1515 aa28.35■■■□□ 2.13
CCDC9-205ENST00000600117 VWDEQ8N2E2 1590 aa28.34■■■□□ 2.13
CCDC9-205ENST00000600117 FBXO31Q5XUX0 539 aaPredicted RBP28.34■■■□□ 2.13
CCDC9-205ENST00000600117 MROH1Q8NDA8 1641 aa28.33■■■□□ 2.13
CCDC9-205ENST00000600117 ANKLE2Q86XL3 938 aa28.33■■■□□ 2.13
CCDC9-205ENST00000600117 KDM5DQ9BY66 1539 aa28.32■■■□□ 2.12
CCDC9-205ENST00000600117 DEPDC5O75140 1603 aa28.32■■■□□ 2.12
CCDC9-205ENST00000600117 THEMISQ8N1K5 641 aaPredicted RBP28.3■■■□□ 2.12
CCDC9-205ENST00000600117 PHF23Q9BUL5 403 aaPredicted RBP28.3■■■□□ 2.12
CCDC9-205ENST00000600117 ALKQ9UM73 1620 aa28.29■■■□□ 2.12
CCDC9-205ENST00000600117 MED14O60244 1454 aa28.28■■■□□ 2.12
CCDC9-205ENST00000600117 PRDM15P57071 1507 aaPredicted RBP28.28■■■□□ 2.12
CCDC9-205ENST00000600117 NLRP1Q9C000 1473 aa28.27■■■□□ 2.12
CCDC9-205ENST00000600117 UNC13BO14795 1591 aa28.27■■■□□ 2.12
CCDC9-205ENST00000600117 SETD5Q9C0A6 1442 aa28.26■■■□□ 2.12
CCDC9-205ENST00000600117 NPHP4O75161 1426 aaPredicted RBP28.26■■■□□ 2.11
CCDC9-205ENST00000600117 UGGT1Q9NYU2 1555 aa28.25■■■□□ 2.11
CCDC9-205ENST00000600117 WASHC2CQ9Y4E1 1318 aa28.24■■■□□ 2.11
CCDC9-205ENST00000600117 IQGAP1P46940 1657 aa28.22■■■□□ 2.11
CCDC9-205ENST00000600117 ABCC3O15438 1527 aa28.18■■■□□ 2.1
CCDC9-205ENST00000600117 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.18■■■□□ 2.1
CCDC9-205ENST00000600117 RAB3GAP2Q9H2M9 1393 aa28.18■■■□□ 2.1
CCDC9-205ENST00000600117 STRCP1A6NGW2 1772 aa28.17■■■□□ 2.1
CCDC9-205ENST00000600117 ZC3H13Q5T200 1668 aaKnown RBP28.16■■■□□ 2.1
CCDC9-205ENST00000600117 CEP152O94986 1710 aa28.16■■■□□ 2.1
CCDC9-205ENST00000600117 LRRC7Q96NW7 1537 aa28.16■■■□□ 2.1
CCDC9-205ENST00000600117 SYNMO15061 1565 aa28.16■■■□□ 2.1
CCDC9-205ENST00000600117 KANK1Q14678 1352 aa28.14■■■□□ 2.1
CCDC9-205ENST00000600117 LMTK2Q8IWU2 1503 aa28.14■■■□□ 2.1
CCDC9-205ENST00000600117 IQGAP3Q86VI3 1631 aa28.14■■■□□ 2.09
CCDC9-205ENST00000600117 NUP155O75694 1391 aa28.12■■■□□ 2.09
CCDC9-205ENST00000600117 HRCP23327 699 aa28.09■■■□□ 2.09
CCDC9-205ENST00000600117 SENP3Q9H4L4 574 aaPredicted RBP28.07■■■□□ 2.08
CCDC9-205ENST00000600117 PCGF6Q9BYE7 350 aa28.06■■■□□ 2.08
CCDC9-205ENST00000600117 TET3O43151 1660 aa28.06■■■□□ 2.08
CCDC9-205ENST00000600117 TRIM52Q96A61 297 aa28.05■■■□□ 2.08
CCDC9-205ENST00000600117 EFCAB6Q5THR3 1501 aa28.04■■■□□ 2.08
CCDC9-205ENST00000600117 ARHGAP31Q2M1Z3 1444 aa28.03■■■□□ 2.08
CCDC9-205ENST00000600117 ACIN1Q9UKV3 1341 aaKnown RBP28.03■■■□□ 2.08
CCDC9-205ENST00000600117 ERVK-7P63135 1459 aa28.02■■■□□ 2.08
CCDC9-205ENST00000600117 RGS17Q9UGC6 210 aaPredicted RBP28.01■■■□□ 2.07
CCDC9-205ENST00000600117 UBR1Q8IWV7 1749 aa28■■■□□ 2.07
CCDC9-205ENST00000600117 E9PCH4 1651 aa27.97■■■□□ 2.07
CCDC9-205ENST00000600117 SCAF11Q99590 1463 aaKnown RBP27.97■■■□□ 2.07
CCDC9-205ENST00000600117 CFAP65Q6ZU64 1925 aaKnown RBP27.97■■■□□ 2.07
CCDC9-205ENST00000600117 XIRP1Q702N8 1843 aaKnown RBP27.96■■■□□ 2.07
CCDC9-205ENST00000600117 RPRD2Q5VT52 1461 aaKnown RBP27.95■■■□□ 2.06
CCDC9-205ENST00000600117 SLC4A1APQ9BWU0 796 aaKnown RBP27.93■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms