RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 RAPGEF6Q8TEU7 1601 aa20.21■□□□□ 0.83
UPF1-204ENST00000596842 C9orf84Q5VXU9 1444 aa20.21■□□□□ 0.83
UPF1-204ENST00000596842 PDE4AP27815 886 aa20.2■□□□□ 0.82
UPF1-204ENST00000596842 KIF14Q15058 1648 aa20.19■□□□□ 0.82
UPF1-204ENST00000596842 MYT1LQ9UL68 1186 aa20.19■□□□□ 0.82
UPF1-204ENST00000596842 IL27Q8NEV9 243 aa20.19■□□□□ 0.82
UPF1-204ENST00000596842 GRIN2AQ12879 1464 aa20.18■□□□□ 0.82
UPF1-204ENST00000596842 ERCC6Q03468 1493 aa20.18■□□□□ 0.82
UPF1-204ENST00000596842 NEFMP07197 916 aa20.17■□□□□ 0.82
UPF1-204ENST00000596842 CRBNQ96SW2 442 aa20.17■□□□□ 0.82
UPF1-204ENST00000596842 CARMIL2Q6F5E8 1435 aa20.17■□□□□ 0.82
UPF1-204ENST00000596842 BRD4O60885 1362 aaPredicted RBP20.16■□□□□ 0.82
UPF1-204ENST00000596842 SLC4A3P48751 1232 aa20.16■□□□□ 0.82
UPF1-204ENST00000596842 ARID4BQ4LE39 1312 aaPredicted RBP20.16■□□□□ 0.82
UPF1-204ENST00000596842 RNF123Q5XPI4 1314 aa20.16■□□□□ 0.82
UPF1-204ENST00000596842 CCDC144AA2RUR9 1427 aa20.13■□□□□ 0.81
UPF1-204ENST00000596842 IFT140Q96RY7 1462 aa20.13■□□□□ 0.81
UPF1-204ENST00000596842 DAXXQ9UER7 740 aaPredicted RBP20.13■□□□□ 0.81
UPF1-204ENST00000596842 C20orf194Q5TEA3 1177 aa20.12■□□□□ 0.81
UPF1-204ENST00000596842 WDR43Q15061 677 aaKnown RBP eCLIP20.12■□□□□ 0.81
UPF1-204ENST00000596842 TCERG1O14776 1098 aaKnown RBP20.11■□□□□ 0.81
UPF1-204ENST00000596842 MBD5Q9P267 1494 aa20.1■□□□□ 0.81
UPF1-204ENST00000596842 RGS3P49796 1198 aa20.1■□□□□ 0.81
UPF1-204ENST00000596842 KDM5CP41229 1560 aa20.1■□□□□ 0.81
UPF1-204ENST00000596842 ADAMTS8Q9UP79 889 aa20.09■□□□□ 0.81
UPF1-204ENST00000596842 RALGAPBQ86X10 1494 aa20.09■□□□□ 0.81
UPF1-204ENST00000596842 CCDC146Q8IYE0 955 aa20.09■□□□□ 0.81
UPF1-204ENST00000596842 TMF1P82094 1093 aa20.09■□□□□ 0.81
UPF1-204ENST00000596842 KNSTRNQ9Y448 316 aa20.08■□□□□ 0.81
UPF1-204ENST00000596842 DISP3Q9P2K9 1392 aa20.06■□□□□ 0.8
UPF1-204ENST00000596842 LRPPRCP42704 1394 aaKnown RBP20.06■□□□□ 0.8
UPF1-204ENST00000596842 BACH2Q9BYV9 841 aa20.05■□□□□ 0.8
UPF1-204ENST00000596842 PER1O15534 1290 aaPredicted RBP20.04■□□□□ 0.8
UPF1-204ENST00000596842 MAGI1Q96QZ7 1491 aaPredicted RBP20.04■□□□□ 0.8
UPF1-204ENST00000596842 PDE3BQ13370 1112 aa20.03■□□□□ 0.8
UPF1-204ENST00000596842 SENP3Q9H4L4 574 aaPredicted RBP20.02■□□□□ 0.8
UPF1-204ENST00000596842 ATP10BO94823 1461 aa20.02■□□□□ 0.8
UPF1-204ENST00000596842 UHRF1BP1Q6BDS2 1440 aa20■□□□□ 0.79
UPF1-204ENST00000596842 ADGRL2O95490 1459 aa20■□□□□ 0.79
UPF1-204ENST00000596842 ITSN2Q9NZM3 1697 aa20■□□□□ 0.79
UPF1-204ENST00000596842 PTPRGP23470 1445 aa19.99■□□□□ 0.79
UPF1-204ENST00000596842 NEUROD2Q15784 382 aa19.99■□□□□ 0.79
UPF1-204ENST00000596842 EIF4G3O43432 1585 aaKnown RBP19.99■□□□□ 0.79
UPF1-204ENST00000596842 TNNT2P45379 298 aaPredicted RBP19.99■□□□□ 0.79
UPF1-204ENST00000596842 TESK2Q96S53 571 aa19.98■□□□□ 0.79
UPF1-204ENST00000596842 POLR1AO95602 1720 aaPredicted RBP19.98■□□□□ 0.79
UPF1-204ENST00000596842 PARD3Q8TEW0 1356 aa19.97■□□□□ 0.79
UPF1-204ENST00000596842 CEP170Q5SW79 1584 aa19.97■□□□□ 0.79
UPF1-204ENST00000596842 ADGBQ8N7X0 1667 aa19.96■□□□□ 0.79
UPF1-204ENST00000596842 PRAG1Q86YV5 1406 aa19.95■□□□□ 0.78
UPF1-204ENST00000596842 CANXP27824 592 aaKnown RBP19.95■□□□□ 0.78
UPF1-204ENST00000596842 SYNJ2O15056 1496 aa19.94■□□□□ 0.78
UPF1-204ENST00000596842 ARXQ96QS3 562 aa19.94■□□□□ 0.78
UPF1-204ENST00000596842 CHGAP10645 457 aaKnown RBP19.93■□□□□ 0.78
UPF1-204ENST00000596842 PPP2R1AP30153 589 aa19.92■□□□□ 0.78
UPF1-204ENST00000596842 ERBINQ96RT1 1412 aa19.92■□□□□ 0.78
UPF1-204ENST00000596842 GOLGA2Q08379 1002 aa19.92■□□□□ 0.78
UPF1-204ENST00000596842 FAM135AQ9P2D6 1515 aa19.92■□□□□ 0.78
UPF1-204ENST00000596842 APAF1O14727 1248 aa19.92■□□□□ 0.78
UPF1-204ENST00000596842 MS4A1P11836 297 aa19.91■□□□□ 0.78
UPF1-204ENST00000596842 PLEKHH2Q8IVE3 1493 aa19.9■□□□□ 0.78
UPF1-204ENST00000596842 PKNOX2Q96KN3 472 aa19.9■□□□□ 0.78
UPF1-204ENST00000596842 ARHGEF12Q9NZN5 1544 aa19.89■□□□□ 0.77
UPF1-204ENST00000596842 CCDC141Q6ZP82 1450 aa19.88■□□□□ 0.77
UPF1-204ENST00000596842 PPM1GO15355 546 aaPredicted RBP19.88■□□□□ 0.77
UPF1-204ENST00000596842 FRAT1Q92837 279 aaPredicted RBP19.88■□□□□ 0.77
UPF1-204ENST00000596842 ARHGAP5Q13017 1502 aa19.88■□□□□ 0.77
UPF1-204ENST00000596842 BCAR3O75815 825 aa19.88■□□□□ 0.77
UPF1-204ENST00000596842 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.88■□□□□ 0.77
UPF1-204ENST00000596842 ABCC10Q5T3U5 1492 aa19.87■□□□□ 0.77
UPF1-204ENST00000596842 DDRGK1Q96HY6 314 aa19.87■□□□□ 0.77
UPF1-204ENST00000596842 CDC42BPAQ5VT25 1732 aa19.87■□□□□ 0.77
UPF1-204ENST00000596842 A2MP01023 1474 aa19.86■□□□□ 0.77
UPF1-204ENST00000596842 AFAP1Q8N556 730 aa19.86■□□□□ 0.77
UPF1-204ENST00000596842 GLIPR1L2Q4G1C9 344 aa19.86■□□□□ 0.77
UPF1-204ENST00000596842 RSPH4AQ5TD94 716 aa19.86■□□□□ 0.77
UPF1-204ENST00000596842 PLEKHH1Q9ULM0 1364 aa19.86■□□□□ 0.77
UPF1-204ENST00000596842 RRP7AQ9Y3A4 280 aaKnown RBP19.85■□□□□ 0.77
UPF1-204ENST00000596842 DUSP27Q5VZP5 1158 aa19.85■□□□□ 0.77
UPF1-204ENST00000596842 SPINK5Q9NQ38 1064 aaPredicted RBP19.84■□□□□ 0.77
UPF1-204ENST00000596842 SYCP2Q9BX26 1530 aa19.83■□□□□ 0.77
UPF1-204ENST00000596842 CROCC2H7BZ55 1655 aa19.83■□□□□ 0.77
UPF1-204ENST00000596842 VSIG10Q8N0Z9 540 aa19.83■□□□□ 0.76
UPF1-204ENST00000596842 PLA2R1Q13018 1463 aa19.82■□□□□ 0.76
UPF1-204ENST00000596842 UBE2Q2Q8WVN8 375 aa19.82■□□□□ 0.76
UPF1-204ENST00000596842 NFKBIBQ15653 356 aa19.81■□□□□ 0.76
UPF1-204ENST00000596842 CENPQQ7L2Z9 268 aaPredicted RBP19.81■□□□□ 0.76
UPF1-204ENST00000596842 SHANK2Q9UPX8 1470 aa19.81■□□□□ 0.76
UPF1-204ENST00000596842 BCL2L13Q9BXK5 485 aa19.81■□□□□ 0.76
UPF1-204ENST00000596842 KDM5DQ9BY66 1539 aa19.8■□□□□ 0.76
UPF1-204ENST00000596842 COL17A1Q9UMD9 1497 aaPredicted RBP19.8■□□□□ 0.76
UPF1-204ENST00000596842 CFAP70Q5T0N1 1121 aa19.79■□□□□ 0.76
UPF1-204ENST00000596842 BRPF3Q9ULD4 1205 aa19.79■□□□□ 0.76
UPF1-204ENST00000596842 WASHC2CQ9Y4E1 1318 aa19.79■□□□□ 0.76
UPF1-204ENST00000596842 FAM161AQ3B820 660 aa19.79■□□□□ 0.76
UPF1-204ENST00000596842 COG6Q9Y2V7 657 aa19.79■□□□□ 0.76
UPF1-204ENST00000596842 CDCA8Q53HL2 280 aa19.78■□□□□ 0.76
UPF1-204ENST00000596842 AMER1Q5JTC6 1135 aaPredicted RBP19.78■□□□□ 0.76
UPF1-204ENST00000596842 EFCAB2Q5VUJ9 269 aa19.78■□□□□ 0.76
UPF1-204ENST00000596842 KIF3BO15066 747 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms