RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 FAM50AQ14320 339 aaKnown RBP28.59■■■□□ 2.17
SHKBP1-202ENST00000593764 KIF15Q9NS87 1388 aa28.59■■■□□ 2.17
SHKBP1-202ENST00000593764 PTPRKQ15262 1439 aa28.59■■■□□ 2.17
SHKBP1-202ENST00000593764 CHIC2Q9UKJ5 165 aa28.58■■■□□ 2.17
SHKBP1-202ENST00000593764 DUOX2Q9NRD8 1548 aa28.58■■■□□ 2.17
SHKBP1-202ENST00000593764 WASHC2CQ9Y4E1 1318 aa28.57■■■□□ 2.16
SHKBP1-202ENST00000593764 KDM5DQ9BY66 1539 aa28.55■■■□□ 2.16
SHKBP1-202ENST00000593764 FAM135AQ9P2D6 1515 aa28.55■■■□□ 2.16
SHKBP1-202ENST00000593764 RNF17Q9BXT8 1623 aaKnown RBP28.54■■■□□ 2.16
SHKBP1-202ENST00000593764 EIF2AK4Q9P2K8 1649 aaKnown RBP28.54■■■□□ 2.16
SHKBP1-202ENST00000593764 NCOA1Q15788 1441 aa28.52■■■□□ 2.16
SHKBP1-202ENST00000593764 ANKRD30AQ9BXX3 1397 aa28.51■■■□□ 2.16
SHKBP1-202ENST00000593764 FBXO31Q5XUX0 539 aaPredicted RBP28.5■■■□□ 2.15
SHKBP1-202ENST00000593764 ERBINQ96RT1 1412 aa28.5■■■□□ 2.15
SHKBP1-202ENST00000593764 MROH1Q8NDA8 1641 aa28.49■■■□□ 2.15
SHKBP1-202ENST00000593764 ADGRL2O95490 1459 aa28.47■■■□□ 2.15
SHKBP1-202ENST00000593764 PZPP20742 1482 aa28.47■■■□□ 2.15
SHKBP1-202ENST00000593764 ABCC3O15438 1527 aa28.46■■■□□ 2.15
SHKBP1-202ENST00000593764 STRCQ7RTU9 1775 aa28.43■■■□□ 2.14
SHKBP1-202ENST00000593764 MYO3AQ8NEV4 1616 aa28.41■■■□□ 2.14
SHKBP1-202ENST00000593764 TNRQ92752 1358 aa28.39■■■□□ 2.14
SHKBP1-202ENST00000593764 ZC3H13Q5T200 1668 aaKnown RBP28.38■■■□□ 2.13
SHKBP1-202ENST00000593764 PRDM15P57071 1507 aaPredicted RBP28.38■■■□□ 2.13
SHKBP1-202ENST00000593764 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.38■■■□□ 2.13
SHKBP1-202ENST00000593764 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.37■■■□□ 2.13
SHKBP1-202ENST00000593764 ZNF142P52746 1687 aaPredicted RBP28.37■■■□□ 2.13
SHKBP1-202ENST00000593764 CEP170BQ9Y4F5 1589 aaPredicted RBP28.37■■■□□ 2.13
SHKBP1-202ENST00000593764 DEPDC5O75140 1603 aa28.36■■■□□ 2.13
SHKBP1-202ENST00000593764 DMRT2Q9Y5R5 561 aa28.35■■■□□ 2.13
SHKBP1-202ENST00000593764 CEP152O94986 1710 aa28.35■■■□□ 2.13
SHKBP1-202ENST00000593764 CAMSAP1Q5T5Y3 1602 aa28.34■■■□□ 2.13
SHKBP1-202ENST00000593764 A2ML1A8K2U0 1454 aa28.34■■■□□ 2.13
SHKBP1-202ENST00000593764 ANKRD50Q9ULJ7 1429 aa28.33■■■□□ 2.13
SHKBP1-202ENST00000593764 ROCK1Q13464 1354 aa28.32■■■□□ 2.12
SHKBP1-202ENST00000593764 ITGAEP38570 1179 aa28.3■■■□□ 2.12
SHKBP1-202ENST00000593764 SPATA31D1Q6ZQQ2 1576 aa28.29■■■□□ 2.12
SHKBP1-202ENST00000593764 VWDEQ8N2E2 1590 aa28.29■■■□□ 2.12
SHKBP1-202ENST00000593764 PTPRTO14522 1441 aa28.29■■■□□ 2.12
SHKBP1-202ENST00000593764 ARHGAP31Q2M1Z3 1444 aa28.29■■■□□ 2.12
SHKBP1-202ENST00000593764 RRBP1Q9P2E9 1410 aaKnown RBP28.29■■■□□ 2.12
SHKBP1-202ENST00000593764 KANK1Q14678 1352 aa28.29■■■□□ 2.12
SHKBP1-202ENST00000593764 ERVK-7P63135 1459 aa28.28■■■□□ 2.12
SHKBP1-202ENST00000593764 NCKAP5LQ9HCH0 1330 aa28.28■■■□□ 2.12
SHKBP1-202ENST00000593764 PLA2R1Q13018 1463 aa28.27■■■□□ 2.12
SHKBP1-202ENST00000593764 NLRP1Q9C000 1473 aa28.27■■■□□ 2.12
SHKBP1-202ENST00000593764 CFAP65Q6ZU64 1925 aaKnown RBP28.26■■■□□ 2.11
SHKBP1-202ENST00000593764 LMTK2Q8IWU2 1503 aa28.25■■■□□ 2.11
SHKBP1-202ENST00000593764 ILDR1Q86SU0 546 aaPredicted RBP28.25■■■□□ 2.11
SHKBP1-202ENST00000593764 PKD2Q13563 968 aa28.24■■■□□ 2.11
SHKBP1-202ENST00000593764 THEMISQ8N1K5 641 aaPredicted RBP28.19■■■□□ 2.1
SHKBP1-202ENST00000593764 UGGT1Q9NYU2 1555 aa28.18■■■□□ 2.1
SHKBP1-202ENST00000593764 CERKQ8TCT0 537 aa28.14■■■□□ 2.1
SHKBP1-202ENST00000593764 EFCAB6Q5THR3 1501 aa28.13■■■□□ 2.09
SHKBP1-202ENST00000593764 UNC13BO14795 1591 aa28.12■■■□□ 2.09
SHKBP1-202ENST00000593764 ANKLE2Q86XL3 938 aa28.11■■■□□ 2.09
SHKBP1-202ENST00000593764 FBXO41Q8TF61 875 aa28.11■■■□□ 2.09
SHKBP1-202ENST00000593764 NOS1P29475 1434 aa28.09■■■□□ 2.09
SHKBP1-202ENST00000593764 NEURL4Q96JN8 1562 aa28.07■■■□□ 2.08
SHKBP1-202ENST00000593764 IDI1Q13907 227 aa28.07■■■□□ 2.08
SHKBP1-202ENST00000593764 RPRD2Q5VT52 1461 aaKnown RBP28.06■■■□□ 2.08
SHKBP1-202ENST00000593764 LTBP4Q8N2S1 1624 aa28.06■■■□□ 2.08
SHKBP1-202ENST00000593764 UBR1Q8IWV7 1749 aa28.06■■■□□ 2.08
SHKBP1-202ENST00000593764 SYNMO15061 1565 aa28.05■■■□□ 2.08
SHKBP1-202ENST00000593764 TET3O43151 1660 aa28.05■■■□□ 2.08
SHKBP1-202ENST00000593764 POLR1AO95602 1720 aaPredicted RBP28.04■■■□□ 2.08
SHKBP1-202ENST00000593764 NUP155O75694 1391 aa28.04■■■□□ 2.08
SHKBP1-202ENST00000593764 NAIPQ13075 1403 aa28.03■■■□□ 2.08
SHKBP1-202ENST00000593764 ZNF335Q9H4Z2 1342 aaPredicted RBP28.03■■■□□ 2.08
SHKBP1-202ENST00000593764 MED14O60244 1454 aa28.02■■■□□ 2.08
SHKBP1-202ENST00000593764 PIK3C2BO00750 1634 aa28.01■■■□□ 2.07
SHKBP1-202ENST00000593764 IQGAP3Q86VI3 1631 aa28.01■■■□□ 2.07
SHKBP1-202ENST00000593764 SLC52A1Q9NWF4 448 aa28■■■□□ 2.07
SHKBP1-202ENST00000593764 GCC2Q8IWJ2 1684 aa28■■■□□ 2.07
SHKBP1-202ENST00000593764 ARHGAP23Q9P227 1491 aa27.99■■■□□ 2.07
SHKBP1-202ENST00000593764 LTKP29376 864 aa27.98■■■□□ 2.07
SHKBP1-202ENST00000593764 NPHP4O75161 1426 aaPredicted RBP27.98■■■□□ 2.07
SHKBP1-202ENST00000593764 SLIT1O75093 1534 aa27.97■■■□□ 2.07
SHKBP1-202ENST00000593764 HFM1A2PYH4 1435 aa27.95■■■□□ 2.07
SHKBP1-202ENST00000593764 E9PCH4 1651 aa27.95■■■□□ 2.07
SHKBP1-202ENST00000593764 STAG3Q9UJ98 1225 aa27.95■■■□□ 2.06
SHKBP1-202ENST00000593764 TXNDC2Q86VQ3 553 aa27.94■■■□□ 2.06
SHKBP1-202ENST00000593764 TMEM2Q9UHN6 1383 aa27.94■■■□□ 2.06
SHKBP1-202ENST00000593764 SCAF11Q99590 1463 aaKnown RBP27.93■■■□□ 2.06
SHKBP1-202ENST00000593764 KDM5AP29375 1690 aaKnown RBP27.93■■■□□ 2.06
SHKBP1-202ENST00000593764 IQGAP1P46940 1657 aa27.9■■■□□ 2.06
SHKBP1-202ENST00000593764 EID1Q9Y6B2 187 aa27.89■■■□□ 2.06
SHKBP1-202ENST00000593764 ADGRB3O60242 1522 aa27.88■■■□□ 2.05
SHKBP1-202ENST00000593764 IQSEC2Q5JU85 1478 aa27.86■■■□□ 2.05
SHKBP1-202ENST00000593764 TMEM131LA2VDJ0 1609 aa27.81■■■□□ 2.04
SHKBP1-202ENST00000593764 TRIM52Q96A61 297 aa27.8■■■□□ 2.04
SHKBP1-202ENST00000593764 MYO5BQ9ULV0 1848 aa27.78■■■□□ 2.04
SHKBP1-202ENST00000593764 CPS1P31327 1500 aa27.78■■■□□ 2.04
SHKBP1-202ENST00000593764 ZFYVE9O95405 1425 aa27.78■■■□□ 2.04
SHKBP1-202ENST00000593764 CHGAP10645 457 aaKnown RBP27.77■■■□□ 2.04
SHKBP1-202ENST00000593764 RIMS2Q9UQ26 1411 aa27.75■■■□□ 2.03
SHKBP1-202ENST00000593764 STRCP1A6NGW2 1772 aa27.73■■■□□ 2.03
SHKBP1-202ENST00000593764 SPHKAPQ2M3C7 1700 aa27.73■■■□□ 2.03
SHKBP1-202ENST00000593764 SLC4A1APQ9BWU0 796 aaKnown RBP27.72■■■□□ 2.03
SHKBP1-202ENST00000593764 HDGFP51858 240 aaKnown RBP27.71■■■□□ 2.03
SHKBP1-202ENST00000593764 SLC26A8Q96RN1 970 aa27.71■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms