RNA–Protein interactions for RNA: ENST00000590704.5

CIRBP-229, Transcript of cold inducible RNA binding protein, human

TSL 2

Gene CIRBP, Length 1,456 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIRBP-229	ENST00000590704	RNF17	Q9BXT8	1623 aa	Known RBP	32.03	■■■□□ 2.72
CIRBP-229	ENST00000590704	ANKRD50	Q9ULJ7	1429 aa		32.02	■■■□□ 2.72
CIRBP-229	ENST00000590704	PPP6R1	Q9UPN7	881 aa		32.02	■■■□□ 2.72
CIRBP-229	ENST00000590704	CEBPA	P49715	358 aa	Predicted RBP	31.97	■■■□□ 2.71
CIRBP-229	ENST00000590704	NAIP	Q13075	1403 aa		31.97	■■■□□ 2.71
CIRBP-229	ENST00000590704	DEPDC5	O75140	1603 aa		31.96	■■■□□ 2.71
CIRBP-229	ENST00000590704	ZMYM3	Q14202	1370 aa		31.93	■■■□□ 2.7
CIRBP-229	ENST00000590704	CNTLN	Q9NXG0	1405 aa		31.92	■■■□□ 2.7
CIRBP-229	ENST00000590704	CLTC	Q00610	1675 aa	Known RBP	31.92	■■■□□ 2.7
CIRBP-229	ENST00000590704	PRDM15	P57071	1507 aa	Predicted RBP	31.91	■■■□□ 2.7
CIRBP-229	ENST00000590704	KDM5D	Q9BY66	1539 aa		31.91	■■■□□ 2.7
CIRBP-229	ENST00000590704	HFM1	A2PYH4	1435 aa		31.9	■■■□□ 2.7
CIRBP-229	ENST00000590704	VWDE	Q8N2E2	1590 aa		31.9	■■■□□ 2.7
CIRBP-229	ENST00000590704	C3	P01024	1663 aa		31.89	■■■□□ 2.69
CIRBP-229	ENST00000590704	MROH2A	A6NES4	1674 aa		31.88	■■■□□ 2.69
CIRBP-229	ENST00000590704	ABCC3	O15438	1527 aa		31.88	■■■□□ 2.69
CIRBP-229	ENST00000590704	WASHC2C	Q9Y4E1	1318 aa		31.87	■■■□□ 2.69
CIRBP-229	ENST00000590704	FAM135A	Q9P2D6	1515 aa		31.86	■■■□□ 2.69
CIRBP-229	ENST00000590704	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	31.84	■■■□□ 2.69
CIRBP-229	ENST00000590704	GCC2	Q8IWJ2	1684 aa		31.83	■■■□□ 2.69
CIRBP-229	ENST00000590704	ESF1	Q9H501	851 aa	Known RBP	31.83	■■■□□ 2.69
CIRBP-229	ENST00000590704	PLPPR3	Q6T4P5	718 aa		31.81	■■■□□ 2.68
CIRBP-229	ENST00000590704	CEP152	O94986	1710 aa		31.8	■■■□□ 2.68
CIRBP-229	ENST00000590704	UNC13B	O14795	1591 aa		31.8	■■■□□ 2.68
CIRBP-229	ENST00000590704	LMTK2	Q8IWU2	1503 aa		31.78	■■■□□ 2.68
CIRBP-229	ENST00000590704	FBXO31	Q5XUX0	539 aa	Predicted RBP	31.78	■■■□□ 2.68
CIRBP-229	ENST00000590704	ZC3H13	Q5T200	1668 aa	Known RBP	31.77	■■■□□ 2.68
CIRBP-229	ENST00000590704	PZP	P20742	1482 aa		31.74	■■■□□ 2.67
CIRBP-229	ENST00000590704	SETD1B	Q9UPS6	1966 aa	Known RBP	31.73	■■■□□ 2.67
CIRBP-229	ENST00000590704	ARHGAP31	Q2M1Z3	1444 aa		31.73	■■■□□ 2.67
CIRBP-229	ENST00000590704	CAMSAP1	Q5T5Y3	1602 aa		31.71	■■■□□ 2.67
CIRBP-229	ENST00000590704	NPAT	Q14207	1427 aa		31.7	■■■□□ 2.67
CIRBP-229	ENST00000590704	KANK1	Q14678	1352 aa		31.7	■■■□□ 2.67
CIRBP-229	ENST00000590704	NUP155	O75694	1391 aa		31.69	■■■□□ 2.66
CIRBP-229	ENST00000590704	IQGAP3	Q86VI3	1631 aa		31.67	■■■□□ 2.66
CIRBP-229	ENST00000590704	SETD5	Q9C0A6	1442 aa		31.67	■■■□□ 2.66
CIRBP-229	ENST00000590704	LMTK3	Q96Q04	1460 aa		31.64	■■■□□ 2.66
CIRBP-229	ENST00000590704	CFAP65	Q6ZU64	1925 aa	Known RBP	31.64	■■■□□ 2.66
CIRBP-229	ENST00000590704	EFCAB6	Q5THR3	1501 aa		31.63	■■■□□ 2.65
CIRBP-229	ENST00000590704	SPATA31D1	Q6ZQQ2	1576 aa		31.62	■■■□□ 2.65
CIRBP-229	ENST00000590704	ERVK-7	P63135	1459 aa		31.61	■■■□□ 2.65
CIRBP-229	ENST00000590704	TET3	O43151	1660 aa		31.61	■■■□□ 2.65
CIRBP-229	ENST00000590704	RAB3GAP2	Q9H2M9	1393 aa		31.6	■■■□□ 2.65
CIRBP-229	ENST00000590704	NOS1	P29475	1434 aa		31.57	■■■□□ 2.64
CIRBP-229	ENST00000590704	TNR	Q92752	1358 aa		31.56	■■■□□ 2.64
CIRBP-229	ENST00000590704	PREX1	Q8TCU6	1659 aa		31.56	■■■□□ 2.64
CIRBP-229	ENST00000590704		E9PCH4	1651 aa		31.56	■■■□□ 2.64
CIRBP-229	ENST00000590704	TRIM26	Q12899	539 aa	Predicted RBP	31.55	■■■□□ 2.64
CIRBP-229	ENST00000590704	RPRD2	Q5VT52	1461 aa	Known RBP	31.52	■■■□□ 2.64
CIRBP-229	ENST00000590704	UHRF1BP1	Q6BDS2	1440 aa		31.52	■■■□□ 2.64
CIRBP-229	ENST00000590704	TRIM52	Q96A61	297 aa		31.52	■■■□□ 2.64
CIRBP-229	ENST00000590704	HRC	P23327	699 aa		31.51	■■■□□ 2.63
CIRBP-229	ENST00000590704	HSPA2	P54652	639 aa		31.51	■■■□□ 2.63
CIRBP-229	ENST00000590704	MYO3A	Q8NEV4	1616 aa		31.5	■■■□□ 2.63
CIRBP-229	ENST00000590704	SYNM	O15061	1565 aa		31.5	■■■□□ 2.63
CIRBP-229	ENST00000590704	A2ML1	A8K2U0	1454 aa		31.44	■■■□□ 2.62
CIRBP-229	ENST00000590704	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	31.44	■■■□□ 2.62
CIRBP-229	ENST00000590704	IDI1	Q13907	227 aa		31.44	■■■□□ 2.62
CIRBP-229	ENST00000590704	MPHOSPH9	Q99550	1183 aa		31.44	■■■□□ 2.62
CIRBP-229	ENST00000590704	ZNF142	P52746	1687 aa	Predicted RBP	31.44	■■■□□ 2.62
CIRBP-229	ENST00000590704	NLRP1	Q9C000	1473 aa		31.43	■■■□□ 2.62
CIRBP-229	ENST00000590704	PTPRT	O14522	1441 aa		31.43	■■■□□ 2.62
CIRBP-229	ENST00000590704	PKD2	Q13563	968 aa		31.43	■■■□□ 2.62
CIRBP-229	ENST00000590704	PLA2R1	Q13018	1463 aa		31.43	■■■□□ 2.62
CIRBP-229	ENST00000590704	SLC4A1AP	Q9BWU0	796 aa	Known RBP	31.42	■■■□□ 2.62
CIRBP-229	ENST00000590704	FOXD1	Q16676	465 aa		31.38	■■■□□ 2.61
CIRBP-229	ENST00000590704	UGGT1	Q9NYU2	1555 aa		31.36	■■■□□ 2.61
CIRBP-229	ENST00000590704	PIK3C2B	O00750	1634 aa		31.35	■■■□□ 2.61
CIRBP-229	ENST00000590704	ACIN1	Q9UKV3	1341 aa	Known RBP	31.35	■■■□□ 2.61
CIRBP-229	ENST00000590704	SLC52A1	Q9NWF4	448 aa		31.33	■■■□□ 2.61
CIRBP-229	ENST00000590704	STRC	Q7RTU9	1775 aa		31.32	■■■□□ 2.6
CIRBP-229	ENST00000590704	UBR1	Q8IWV7	1749 aa		31.31	■■■□□ 2.6
CIRBP-229	ENST00000590704	SPHKAP	Q2M3C7	1700 aa		31.31	■■■□□ 2.6
CIRBP-229	ENST00000590704	THEMIS	Q8N1K5	641 aa	Predicted RBP	31.26	■■■□□ 2.59
CIRBP-229	ENST00000590704	TRPM2	O94759	1503 aa		31.26	■■■□□ 2.59
CIRBP-229	ENST00000590704	TMEM131L	A2VDJ0	1609 aa		31.23	■■■□□ 2.59
CIRBP-229	ENST00000590704	CLTCL1	P53675	1640 aa		31.23	■■■□□ 2.59
CIRBP-229	ENST00000590704	ARHGAP23	Q9P227	1491 aa		31.23	■■■□□ 2.59
CIRBP-229	ENST00000590704	KDM5A	P29375	1690 aa	Known RBP	31.22	■■■□□ 2.59
CIRBP-229	ENST00000590704	NCKAP5L	Q9HCH0	1330 aa		31.22	■■■□□ 2.59
CIRBP-229	ENST00000590704	ADGRB3	O60242	1522 aa		31.2	■■■□□ 2.58
CIRBP-229	ENST00000590704	MYO5B	Q9ULV0	1848 aa		31.19	■■■□□ 2.58
CIRBP-229	ENST00000590704	SLIT1	O75093	1534 aa		31.18	■■■□□ 2.58
CIRBP-229	ENST00000590704	LTK	P29376	864 aa		31.18	■■■□□ 2.58
CIRBP-229	ENST00000590704	ANKRD30B	Q9BXX2	1392 aa		31.17	■■■□□ 2.58
CIRBP-229	ENST00000590704	TMEM2	Q9UHN6	1383 aa		31.16	■■■□□ 2.58
CIRBP-229	ENST00000590704	PCGF6	Q9BYE7	350 aa		31.15	■■■□□ 2.58
CIRBP-229	ENST00000590704	NEURL4	Q96JN8	1562 aa		31.14	■■■□□ 2.58
CIRBP-229	ENST00000590704	ILDR1	Q86SU0	546 aa	Predicted RBP	31.12	■■■□□ 2.57
CIRBP-229	ENST00000590704	ZFYVE9	O95405	1425 aa		31.11	■■■□□ 2.57
CIRBP-229	ENST00000590704	ANKLE2	Q86XL3	938 aa		31.1	■■■□□ 2.57
CIRBP-229	ENST00000590704	STAG3	Q9UJ98	1225 aa		31.1	■■■□□ 2.57
CIRBP-229	ENST00000590704	MED14	O60244	1454 aa		31.09	■■■□□ 2.57
CIRBP-229	ENST00000590704	CHGA	P10645	457 aa	Known RBP	31.08	■■■□□ 2.57
CIRBP-229	ENST00000590704	DHX57	Q6P158	1386 aa	Known RBP	31.06	■■■□□ 2.56
CIRBP-229	ENST00000590704	TXNDC2	Q86VQ3	553 aa		31.06	■■■□□ 2.56
CIRBP-229	ENST00000590704	SPATA31E1	Q6ZUB1	1445 aa		31.04	■■■□□ 2.56
CIRBP-229	ENST00000590704	POLR1A	O95602	1720 aa	Predicted RBP	31.04	■■■□□ 2.56
CIRBP-229	ENST00000590704	SCAF11	Q99590	1463 aa	Known RBP	31.04	■■■□□ 2.56
CIRBP-229	ENST00000590704	CCDC144A	A2RUR9	1427 aa		31.03	■■■□□ 2.56

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