RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 RRP7BPQ9NSQ0 103 aa31.55■■■□□ 2.64
SS18-224ENST00000584083 DUOX2Q9NRD8 1548 aa31.54■■■□□ 2.64
SS18-224ENST00000584083 KIF15Q9NS87 1388 aa31.54■■■□□ 2.64
SS18-224ENST00000584083 KDM5DQ9BY66 1539 aa31.54■■■□□ 2.64
SS18-224ENST00000584083 EIF2AK4Q9P2K8 1649 aaKnown RBP31.53■■■□□ 2.64
SS18-224ENST00000584083 PPARGC1BQ86YN6 1023 aaKnown RBP31.53■■■□□ 2.64
SS18-224ENST00000584083 PTPRKQ15262 1439 aa31.52■■■□□ 2.64
SS18-224ENST00000584083 CHIC2Q9UKJ5 165 aa31.52■■■□□ 2.64
SS18-224ENST00000584083 FAM135AQ9P2D6 1515 aa31.52■■■□□ 2.64
SS18-224ENST00000584083 RNF17Q9BXT8 1623 aaKnown RBP31.51■■■□□ 2.63
SS18-224ENST00000584083 ANKRD30AQ9BXX3 1397 aa31.47■■■□□ 2.63
SS18-224ENST00000584083 MYO3AQ8NEV4 1616 aa31.44■■■□□ 2.62
SS18-224ENST00000584083 STRCQ7RTU9 1775 aa31.43■■■□□ 2.62
SS18-224ENST00000584083 ERBINQ96RT1 1412 aa31.42■■■□□ 2.62
SS18-224ENST00000584083 PZPP20742 1482 aa31.41■■■□□ 2.62
SS18-224ENST00000584083 FBXO31Q5XUX0 539 aaPredicted RBP31.41■■■□□ 2.62
SS18-224ENST00000584083 ZC3H13Q5T200 1668 aaKnown RBP31.41■■■□□ 2.62
SS18-224ENST00000584083 MROH1Q8NDA8 1641 aa31.4■■■□□ 2.62
SS18-224ENST00000584083 NCOA1Q15788 1441 aa31.4■■■□□ 2.62
SS18-224ENST00000584083 ABCC3O15438 1527 aa31.39■■■□□ 2.62
SS18-224ENST00000584083 DMRT2Q9Y5R5 561 aa31.38■■■□□ 2.61
SS18-224ENST00000584083 CEP170BQ9Y4F5 1589 aaPredicted RBP31.37■■■□□ 2.61
SS18-224ENST00000584083 ZNF142P52746 1687 aaPredicted RBP31.37■■■□□ 2.61
SS18-224ENST00000584083 CEP152O94986 1710 aa31.37■■■□□ 2.61
SS18-224ENST00000584083 TNRQ92752 1358 aa31.36■■■□□ 2.61
SS18-224ENST00000584083 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.36■■■□□ 2.614e-7■□□□□ 9.3
SS18-224ENST00000584083 ADGRL2O95490 1459 aa31.35■■■□□ 2.61
SS18-224ENST00000584083 CAMSAP1Q5T5Y3 1602 aa31.35■■■□□ 2.61
SS18-224ENST00000584083 CFAP65Q6ZU64 1925 aaKnown RBP31.32■■■□□ 2.6
SS18-224ENST00000584083 PRDM15P57071 1507 aaPredicted RBP31.31■■■□□ 2.6
SS18-224ENST00000584083 A2ML1A8K2U0 1454 aa31.3■■■□□ 2.6
SS18-224ENST00000584083 DEPDC5O75140 1603 aa31.29■■■□□ 2.6
SS18-224ENST00000584083 KANK1Q14678 1352 aa31.29■■■□□ 2.6
SS18-224ENST00000584083 ILDR1Q86SU0 546 aaPredicted RBP31.27■■■□□ 2.6
SS18-224ENST00000584083 ITGAEP38570 1179 aa31.26■■■□□ 2.59
SS18-224ENST00000584083 PTPRTO14522 1441 aa31.24■■■□□ 2.59
SS18-224ENST00000584083 NCKAP5LQ9HCH0 1330 aa31.24■■■□□ 2.59
SS18-224ENST00000584083 ANKRD50Q9ULJ7 1429 aa31.23■■■□□ 2.59
SS18-224ENST00000584083 ERVK-7P63135 1459 aa31.21■■■□□ 2.59
SS18-224ENST00000584083 PLA2R1Q13018 1463 aa31.21■■■□□ 2.59
SS18-224ENST00000584083 NLRP1Q9C000 1473 aa31.21■■■□□ 2.59
SS18-224ENST00000584083 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.21■■■□□ 2.59
SS18-224ENST00000584083 SPATA31D1Q6ZQQ2 1576 aa31.21■■■□□ 2.59
SS18-224ENST00000584083 PKD2Q13563 968 aa31.18■■■□□ 2.58
SS18-224ENST00000584083 ROCK1Q13464 1354 aa31.17■■■□□ 2.58
SS18-224ENST00000584083 ARHGAP31Q2M1Z3 1444 aa31.17■■■□□ 2.58
SS18-224ENST00000584083 THEMISQ8N1K5 641 aaPredicted RBP31.15■■■□□ 2.58
SS18-224ENST00000584083 VWDEQ8N2E2 1590 aa31.14■■■□□ 2.58
SS18-224ENST00000584083 UGGT1Q9NYU2 1555 aa31.14■■■□□ 2.58
SS18-224ENST00000584083 CERKQ8TCT0 537 aa31.13■■■□□ 2.57
SS18-224ENST00000584083 LMTK2Q8IWU2 1503 aa31.13■■■□□ 2.57
SS18-224ENST00000584083 FBXO41Q8TF61 875 aa31.11■■■□□ 2.57
SS18-224ENST00000584083 RRBP1Q9P2E9 1410 aaKnown RBP31.11■■■□□ 2.57
SS18-224ENST00000584083 POLR1AO95602 1720 aaPredicted RBP31.09■■■□□ 2.57
SS18-224ENST00000584083 ANKLE2Q86XL3 938 aa31.06■■■□□ 2.56
SS18-224ENST00000584083 EFCAB6Q5THR3 1501 aa31.05■■■□□ 2.56
SS18-224ENST00000584083 UNC13BO14795 1591 aa31.04■■■□□ 2.56
SS18-224ENST00000584083 UBR1Q8IWV7 1749 aa31.01■■■□□ 2.56
SS18-224ENST00000584083 TET3O43151 1660 aa31■■■□□ 2.55
SS18-224ENST00000584083 NEURL4Q96JN8 1562 aa30.99■■■□□ 2.55
SS18-224ENST00000584083 LTBP4Q8N2S1 1624 aa30.97■■■□□ 2.55
SS18-224ENST00000584083 PIK3C2BO00750 1634 aa30.96■■■□□ 2.55
SS18-224ENST00000584083 STAG3Q9UJ98 1225 aa30.96■■■□□ 2.55
SS18-224ENST00000584083 GCC2Q8IWJ2 1684 aa30.96■■■□□ 2.55
SS18-224ENST00000584083 ZNF335Q9H4Z2 1342 aaPredicted RBP30.96■■■□□ 2.55
SS18-224ENST00000584083 RPRD2Q5VT52 1461 aaKnown RBP30.95■■■□□ 2.54
SS18-224ENST00000584083 SYNMO15061 1565 aa30.94■■■□□ 2.54
SS18-224ENST00000584083 NOS1P29475 1434 aa30.94■■■□□ 2.54
SS18-224ENST00000584083 NUP155O75694 1391 aa30.93■■■□□ 2.54
SS18-224ENST00000584083 IDI1Q13907 227 aa30.93■■■□□ 2.54
SS18-224ENST00000584083 IQGAP3Q86VI3 1631 aa30.92■■■□□ 2.54
SS18-224ENST00000584083 NPHP4O75161 1426 aaPredicted RBP30.91■■■□□ 2.54
SS18-224ENST00000584083 MED14O60244 1454 aa30.89■■■□□ 2.54
SS18-224ENST00000584083 SLC52A1Q9NWF4 448 aa30.88■■■□□ 2.53
SS18-224ENST00000584083 IQGAP1P46940 1657 aa30.87■■■□□ 2.53
SS18-224ENST00000584083 E9PCH4 1651 aa30.87■■■□□ 2.53
SS18-224ENST00000584083 TXNDC2Q86VQ3 553 aa30.86■■■□□ 2.53
SS18-224ENST00000584083 KDM5AP29375 1690 aaKnown RBP30.86■■■□□ 2.53
SS18-224ENST00000584083 SLIT1O75093 1534 aa30.85■■■□□ 2.53
SS18-224ENST00000584083 SCAF11Q99590 1463 aaKnown RBP30.85■■■□□ 2.53
SS18-224ENST00000584083 EID1Q9Y6B2 187 aa30.85■■■□□ 2.53
SS18-224ENST00000584083 ARHGAP23Q9P227 1491 aa30.84■■■□□ 2.53
SS18-224ENST00000584083 NAIPQ13075 1403 aa30.84■■■□□ 2.53
SS18-224ENST00000584083 LTKP29376 864 aa30.82■■■□□ 2.52
SS18-224ENST00000584083 TMEM2Q9UHN6 1383 aa30.81■■■□□ 2.52
SS18-224ENST00000584083 ADGRB3O60242 1522 aa30.81■■■□□ 2.52
SS18-224ENST00000584083 IQSEC2Q5JU85 1478 aa30.8■■■□□ 2.52
SS18-224ENST00000584083 HFM1A2PYH4 1435 aa30.76■■■□□ 2.51
SS18-224ENST00000584083 MYO5BQ9ULV0 1848 aa30.76■■■□□ 2.51
SS18-224ENST00000584083 CHGAP10645 457 aaKnown RBP30.73■■■□□ 2.51
SS18-224ENST00000584083 CPS1P31327 1500 aa30.73■■■□□ 2.51
SS18-224ENST00000584083 TRIM52Q96A61 297 aa30.72■■■□□ 2.51
SS18-224ENST00000584083 TMEM131LA2VDJ0 1609 aa30.69■■■□□ 2.5
SS18-224ENST00000584083 SPHKAPQ2M3C7 1700 aa30.67■■■□□ 2.5
SS18-224ENST00000584083 STRCP1A6NGW2 1772 aa30.64■■■□□ 2.5
SS18-224ENST00000584083 UBAP1LF5GYI3 381 aa30.64■■■□□ 2.5
SS18-224ENST00000584083 HDGFP51858 240 aaKnown RBP30.64■■■□□ 2.5
SS18-224ENST00000584083 BCANQ96GW7 911 aa30.64■■■□□ 2.5
SS18-224ENST00000584083 RIMS2Q9UQ26 1411 aa30.63■■■□□ 2.49
SS18-224ENST00000584083 PPP1R15AO75807 674 aaPredicted RBP30.62■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms