RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 TNIKQ9UKE5 1360 aa17.12■□□□□ 0.33
SS18-221ENST00000582448 GTPBP6O43824 516 aaPredicted RBP17.11■□□□□ 0.33
SS18-221ENST00000582448 CARMIL2Q6F5E8 1435 aa17.11■□□□□ 0.33
SS18-221ENST00000582448 CUL7Q14999 1698 aa17.07■□□□□ 0.32
SS18-221ENST00000582448 ASXL2Q76L83 1435 aa17.07■□□□□ 0.32
SS18-221ENST00000582448 ABCC2Q92887 1545 aa17.05■□□□□ 0.32
SS18-221ENST00000582448 PLB1Q6P1J6 1458 aa17.04■□□□□ 0.32
SS18-221ENST00000582448 RYDENQ9NUL5 291 aaKnown RBP17.02■□□□□ 0.32
SS18-221ENST00000582448 ST18O60284 1047 aa17.01■□□□□ 0.31
SS18-221ENST00000582448 BBXQ8WY36 941 aaPredicted RBP17.01■□□□□ 0.31
SS18-221ENST00000582448 UACAQ9BZF9 1416 aa17.01■□□□□ 0.31
SS18-221ENST00000582448 SNPHO15079 494 aa17■□□□□ 0.31
SS18-221ENST00000582448 HOXB3P14651 431 aaPredicted RBP16.99■□□□□ 0.31
SS18-221ENST00000582448 KIF3CO14782 793 aa16.98■□□□□ 0.31
SS18-221ENST00000582448 IQGAP2Q13576 1575 aa16.98■□□□□ 0.31
SS18-221ENST00000582448 C2orf72A6NCS6 295 aa16.97■□□□□ 0.31
SS18-221ENST00000582448 ADGRL1O94910 1474 aa16.97■□□□□ 0.31
SS18-221ENST00000582448 COL17A1Q9UMD9 1497 aaPredicted RBP16.96■□□□□ 0.31
SS18-221ENST00000582448 GLI2P10070 1586 aa16.95■□□□□ 0.3
SS18-221ENST00000582448 UHRF1BP1LA0JNW5 1464 aa16.95■□□□□ 0.3
SS18-221ENST00000582448 EPRSP07814 1512 aaKnown RBP16.94■□□□□ 0.3
SS18-221ENST00000582448 DISP1Q96F81 1524 aa16.94■□□□□ 0.3
SS18-221ENST00000582448 KCNH8Q96L42 1107 aa16.93■□□□□ 0.3
SS18-221ENST00000582448 PPRC1Q5VV67 1664 aaKnown RBP16.93■□□□□ 0.3
SS18-221ENST00000582448 POTEMA6NI47 508 aa16.92■□□□□ 0.3
SS18-221ENST00000582448 POTEGQ6S5H5 508 aa16.91■□□□□ 0.3
SS18-221ENST00000582448 TEX14Q8IWB6 1497 aa16.89■□□□□ 0.29
SS18-221ENST00000582448 RAPGEF2Q9Y4G8 1499 aa16.89■□□□□ 0.29
SS18-221ENST00000582448 KDM5BQ9UGL1 1544 aa16.89■□□□□ 0.29
SS18-221ENST00000582448 TMC2Q8TDI7 906 aa16.88■□□□□ 0.29
SS18-221ENST00000582448 ZCCHC11Q5TAX3 1644 aaKnown RBP16.85■□□□□ 0.29
SS18-221ENST00000582448 UGGT2Q9NYU1 1516 aa16.85■□□□□ 0.29
SS18-221ENST00000582448 DOK7Q18PE1 504 aa16.84■□□□□ 0.29
SS18-221ENST00000582448 MAP3K4Q9Y6R4 1608 aa16.84■□□□□ 0.29
SS18-221ENST00000582448 ARID3CA6NKF2 412 aa16.83■□□□□ 0.28
SS18-221ENST00000582448 WDR7Q9Y4E6 1490 aa16.82■□□□□ 0.28
SS18-221ENST00000582448 CD109Q6YHK3 1445 aa16.82■□□□□ 0.28
SS18-221ENST00000582448 MARVELD3Q96A59 401 aa16.82■□□□□ 0.28
SS18-221ENST00000582448 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.82■□□□□ 0.28
SS18-221ENST00000582448 KIAA0556O60303 1618 aa16.81■□□□□ 0.28
SS18-221ENST00000582448 GPHNQ9NQX3 736 aaPredicted RBP16.81■□□□□ 0.28
SS18-221ENST00000582448 HECW2Q9P2P5 1572 aa16.8■□□□□ 0.28
SS18-221ENST00000582448 P3H3Q8IVL6 736 aa16.79■□□□□ 0.28
SS18-221ENST00000582448 ZNF710Q8N1W2 664 aa16.79■□□□□ 0.28
SS18-221ENST00000582448 SPRYD3Q8NCJ5 442 aa16.79■□□□□ 0.28
SS18-221ENST00000582448 CRISPLD2Q9H0B8 497 aa16.79■□□□□ 0.28
SS18-221ENST00000582448 CADPS2Q86UW7 1296 aa16.78■□□□□ 0.28
SS18-221ENST00000582448 NCKAP5LQ9HCH0 1330 aa16.77■□□□□ 0.28
SS18-221ENST00000582448 PAXIP1Q6ZW49 1069 aaPredicted RBP16.77■□□□□ 0.28
SS18-221ENST00000582448 FAM9AQ8IZU1 332 aaPredicted RBP16.77■□□□□ 0.28
SS18-221ENST00000582448 DSG2Q14126 1118 aa16.76■□□□□ 0.27
SS18-221ENST00000582448 FOXK1P85037 733 aa16.75■□□□□ 0.27
SS18-221ENST00000582448 CFAP44Q96MT7 982 aa16.75■□□□□ 0.27
SS18-221ENST00000582448 HOXB1P14653 301 aaPredicted RBP16.74■□□□□ 0.27
SS18-221ENST00000582448 GPR153Q6NV75 609 aa16.73■□□□□ 0.27
SS18-221ENST00000582448 PLPP6Q8IY26 295 aa16.73■□□□□ 0.27
SS18-221ENST00000582448 GOLGA3Q08378 1498 aa16.73■□□□□ 0.27
SS18-221ENST00000582448 MAGI3Q5TCQ9 1506 aa16.72■□□□□ 0.27
SS18-221ENST00000582448 RIMBP2O15034 1052 aa16.72■□□□□ 0.27
SS18-221ENST00000582448 EMP3P54852 163 aa16.7■□□□□ 0.26
SS18-221ENST00000582448 KHSRPQ92945 711 aaKnown RBP eCLIP16.7■□□□□ 0.263e-7■■■■□ 19.3
SS18-221ENST00000582448 ZSWIM6Q9HCJ5 1215 aa16.7■□□□□ 0.26
SS18-221ENST00000582448 ARSIQ5FYB1 569 aa16.69■□□□□ 0.26
SS18-221ENST00000582448 ABCA8O94911 1581 aa16.68■□□□□ 0.26
SS18-221ENST00000582448 PDE4AP27815 886 aa16.68■□□□□ 0.26
SS18-221ENST00000582448 CFAP43Q8NDM7 1665 aa16.66■□□□□ 0.26
SS18-221ENST00000582448 POTEB3A0JP26 581 aa16.66■□□□□ 0.26
SS18-221ENST00000582448 RAPGEF3O95398 923 aa16.66■□□□□ 0.26
SS18-221ENST00000582448 SLC34A2O95436 690 aa16.66■□□□□ 0.26
SS18-221ENST00000582448 RANGAP1P46060 587 aaPredicted RBP16.66■□□□□ 0.26
SS18-221ENST00000582448 POTEBQ6S5H4 581 aa16.66■□□□□ 0.26
SS18-221ENST00000582448 ARID4BQ4LE39 1312 aaPredicted RBP16.66■□□□□ 0.26
SS18-221ENST00000582448 LARP6Q9BRS8 491 aaKnown RBP16.65■□□□□ 0.26
SS18-221ENST00000582448 CTTNBP2Q8WZ74 1663 aa16.65■□□□□ 0.26
SS18-221ENST00000582448 KIF21BO75037 1637 aa16.63■□□□□ 0.25
SS18-221ENST00000582448 PPP1R15BQ5SWA1 713 aa16.63■□□□□ 0.25
SS18-221ENST00000582448 ATP10BO94823 1461 aa16.62■□□□□ 0.25
SS18-221ENST00000582448 FAM205CA6NFA0 338 aa16.62■□□□□ 0.25
SS18-221ENST00000582448 FBXO41Q8TF61 875 aa16.62■□□□□ 0.25
SS18-221ENST00000582448 PCDHGA4Q9Y5G9 962 aa16.62■□□□□ 0.25
SS18-221ENST00000582448 MFSD10Q14728 455 aa16.61■□□□□ 0.25
SS18-221ENST00000582448 PRXQ9BXM0 1461 aa16.61■□□□□ 0.25
SS18-221ENST00000582448 HS3ST6Q96QI5 342 aa16.6■□□□□ 0.25
SS18-221ENST00000582448 CDAN1Q8IWY9 1227 aa16.59■□□□□ 0.25
SS18-221ENST00000582448 ARAP3Q8WWN8 1544 aa16.59■□□□□ 0.25
SS18-221ENST00000582448 PTCD2Q8WV60 388 aaKnown RBP16.57■□□□□ 0.24
SS18-221ENST00000582448 DDX27Q96GQ7 796 aaKnown RBP16.57■□□□□ 0.24
SS18-221ENST00000582448 PTPRMP28827 1452 aa16.56■□□□□ 0.24
SS18-221ENST00000582448 PHLDB1Q86UU1 1377 aa16.55■□□□□ 0.24
SS18-221ENST00000582448 NUDT7P0C024 238 aa16.55■□□□□ 0.24
SS18-221ENST00000582448 ERBB3P21860 1342 aa16.54■□□□□ 0.24
SS18-221ENST00000582448 PCDH10Q9P2E7 1040 aa16.52■□□□□ 0.24
SS18-221ENST00000582448 PLEKHD1A6NEE1 506 aa16.51■□□□□ 0.23
SS18-221ENST00000582448 UPF1Q92900 1129 aaKnown RBP eCLIP16.51■□□□□ 0.23
SS18-221ENST00000582448 OXER1Q8TDS5 423 aa16.5■□□□□ 0.23
SS18-221ENST00000582448 ABCA9Q8IUA7 1624 aa16.49■□□□□ 0.23
SS18-221ENST00000582448 VARS2Q5ST30 1063 aaKnown RBP16.49■□□□□ 0.23
SS18-221ENST00000582448 NEO1Q92859 1461 aa16.48■□□□□ 0.23
SS18-221ENST00000582448 HSPA2P54652 639 aa16.48■□□□□ 0.23
SS18-221ENST00000582448 ADAMTSL3P82987 1691 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms